Pre_GI Gene

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Host: NC_010673 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010673:479552 Borrelia hermsii DAH, complete genome

Host Lineage: Borrelia hermsii; Borrelia; Spirochaetaceae; Spirochaetales; Spirochaetes; Bacteria

General Information: This strain was isolated from a case of relapsing fever in western Washington, USA. Borrelia hermsii is the causative agent of tick-borne relapsing fever in the western United States and Canada. Borrelia then multiplies rapidly, causing a generalized infection throughout the tick. While feeding, the tick passes the organism into a mammalian host through its infectious saliva. Relapsing fever is characterized by a period of chills, fever, headache, and malaise, an asymptomatic period, followed by another episode of symptoms. This cycle of relapsing is due to changes in the surface proteins of Borrelia, which allow it to avoid detection and removal by the host immune system. This antigenic variation is the result of homologous recombination of silent proteins into an expressed locus, causing partial or complete replacement of one serotype with another. These plasmids carry genes involved in antigenic variation and pathogenicity.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
479552480535984hypothetical cytosolic proteinQuickGO ontology
4806294824371809excinuclease ABC subunit CQuickGO ontologyBLASTP
4825574840741518hypothetical proteinBLASTP
4840104853741365tetratricopeptide repeat family proteinQuickGO ontologyBLASTP
485694486404711hypothetical proteinBLASTP
48653348660674tRNA-ArgQuickGO ontology
48662248670887tRNA-SerQuickGO ontologyBLASTP
4869824886341653DNA polymerase III subunit gammatauQuickGO ontologyBLASTP
488638488937300hypothetical proteinBLASTP
488941489525585recombination protein RecRQuickGO ontologyBLASTP
489744490253510nucleoside diphosphate kinaseQuickGO ontologyBLASTP
490263491081819modification methylase LlaDCHIAQuickGO ontologyBLASTP
491316491852537hypothetical proteinBLASTP
491849492559711hypothetical proteinBLASTP
492495493328834ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
493325494014690hypothetical cytosolic proteinQuickGO ontologyBLASTP
493914494762849NIF3-related proteinQuickGO ontologyBLASTP
494772495284513lipoprotein signal peptidaseQuickGO ontologyBLASTP
495281495508228hypothetical proteinBLASTP
495520496341822hypothetical proteinBLASTP
4963754976881314UDP-N-acetylglucosamine 1-carboxyvinyltransferaseQuickGO ontologyBLASTP
4979074992531347Na driven multidrug efflux pumpQuickGO ontologyBLASTP
499497499886390hypothetical proteinBLASTP
5002765014601185protein translation elongation factor Tu EF-TUQuickGO ontologyBLASTP
501507501818312SSU ribosomal protein S10PQuickGO ontologyBLASTP
501854502483630LSU ribosomal protein L3PQuickGO ontologyBLASTP
502446503114669LSU ribosomal protein L1EQuickGO ontologyBLASTP
503136503432297LSU ribosomal protein L23PQuickGO ontologyBLASTP
503438504283846LSU ribosomal protein L2PQuickGO ontologyBLASTP
504293504571279SSU ribosomal protein S19PQuickGO ontologyBLASTP
504577504939363LSU ribosomal protein L22PQuickGO ontologyBLASTP
504943505773831SSU ribosomal protein S3PQuickGO ontologyBLASTP
505793506209417LSU ribosomal protein L16PQuickGO ontologyBLASTP
506213506413201LSU ribosomal protein L29PQuickGO ontologyBLASTP
506419506673255SSU ribosomal protein S17PQuickGO ontologyBLASTP
506698507072375LSU ribosomal protein L14PQuickGO ontologyBLASTP
507083507388306LSU ribosomal protein L24PQuickGO ontologyBLASTP