Pre_GI Gene

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Host: NC_010572 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010572:1293786 Streptomyces griseus subsp. griseus NBRC 13350, complete genome

Host Lineage: Streptomyces griseus; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Soil bacterium producing an antituberculosis agent. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin. Streptomycetes produce both substrate and aerial mycelium. The latter shows characteristic modes of branching, and in the course of the streptomycete complex life cycle, these hyphae are partly transformed into chains of spores, which are often called conidia or arthrospores. An important feature in Streptomyces is the presence of type-I peptidoglycan in the cell walls that contains characteristic interpeptide glycine bridges. Another remarkable trait of streptomycetes is that they contain very large (~8 million base pairs which is about twice the size of most bacterial genomes) linear chromosomes with distinct telomeres. These rearrangements consist of the deletion of several hundred kilobases, often associated with the amplification of an adjacent sequence, and lead to metabolic diversity within the Streptomyces group. Sequencing of several strains of Streptomyces is aimed partly on understanding the mechanisms involved in these diversification processes.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
129220312937891587putative D-ribose ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
129378612948021017putative LacI-family transcriptional regulatorQuickGO ontologyBLASTP
12951401295721582putative TetR-family transcriptional regulatorQuickGO ontology
129602512971791155putative peptidyl-arginine deiminase family proteinQuickGO ontologyBLASTP
12972141297921708hypothetical proteinBLASTP
12979181298136219hypothetical proteinBLASTP
12981851298943759putative DeoR-family transcriptional regulatorQuickGO ontologyBLASTP
12992401300067828putative bromoperoxidaseQuickGO ontologyBLASTP
130050913018131305hypothetical proteinBLASTP
130188613029681083hypothetical proteinBLASTP
130303613044421407hypothetical proteinBLASTP
130443913056141176hypothetical proteinBLASTP
13056221306470849hypothetical proteinBLASTP
13064701307219750hypothetical proteinBLASTP
13072131308085873hypothetical proteinBLASTP
130808213093891308hypothetical proteinBLASTP
130938613104531068putative myo-inositol phosphate synthaseQuickGO ontologyBLASTP
131055213142713720hypothetical proteinBLASTP
131459313155971005putative sugar phosphate isomerasesepimerasesQuickGO ontologyBLASTP
131561113168461236putative oxidoreductaseQuickGO ontologyBLASTP