Pre_GI Gene

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Host: NC_010322 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010322:3831444 Pseudomonas putida GB-1 chromosome, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
38314443832046603hypothetical proteinBLASTP
38320463832630585hypothetical proteinBLASTP
383264738353732727lambda family phage tail tape measure proteinQuickGO ontologyBLASTP
38354303835744315hypothetical proteinBLASTP
38361113836569459hypothetical protein
38365623837137576hypothetical proteinBLASTP
38371343837988855prophage antirepressorQuickGO ontologyBLASTP
38380633838221159Arc domain-containing proteinQuickGO ontology
38383363838743408Arc domain-containing proteinQuickGO ontologyBLASTP
38389253839500576hypothetical proteinBLASTP
38396423840247606hypothetical protein
38404433840736294hypothetical protein
38409383841234297hypothetical proteinBLASTP
38412523841635384hypothetical proteinBLASTP
38416453842304660tail protein 3QuickGO ontologyBLASTP
38423713842961591hypothetical protein
38430223843444423hypothetical proteinBLASTP
38434413844115675hypothetical proteinBLASTP
38441173844509393hypothetical proteinBLASTP
38445123844904393hypothetical proteinBLASTP
38449453845529585hypothetical protein
38455783846522945hypothetical proteinBLASTP
38465333847252720hypothetical protein
384768138487241044SPP1 family phage head morphogenesis proteinQuickGO ontologyBLASTP
384871438501381425hypothetical proteinBLASTP