Pre_GI Gene

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Host: NC_010322 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_010322:1520973 Pseudomonas putida GB-1 chromosome, complete genome

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
152097315232132241bifunctional cyclohexadienyl dehydrogenase 3-phosphoshikimate 1-carboxyvinyltransferaseQuickGO ontologyBLASTP
15232101523896687cytidylate kinaseQuickGO ontologyBLASTP
15240211525697167730S ribosomal protein S1QuickGO ontologyBLASTP
15258661526318453hypothetical proteinBLASTP
15268361527132297integration host factor subunit betaQuickGO ontologyBLASTP
15271521527415264hypothetical proteinBLASTP
152751815289511434beta-lactamase domain-containing proteinQuickGO ontologyBLASTP
152934315303861044lipopolysaccharide biosynthesis proteinQuickGO ontologyBLASTP
153043415316841251polysaccharide biosynthesis proteinQuickGO ontologyBLASTP
153173215327331002hemolytic protein HlpA-like proteinQuickGO ontologyBLASTP
153273715337621026hypothetical proteinBLASTP
153383315350411209glycosyl transferase group 1 proteinQuickGO ontologyBLASTP
153503415360681035polysaccharide biosynthesis protein CapDQuickGO ontologyBLASTP
153607315371911119NAD-dependent epimerasedehydrataseQuickGO ontologyBLASTP
153721415383441131UDP-N-acetylglucosamine 2-epimeraseQuickGO ontologyBLASTP
153835915396091251glycosyl transferase group 1 proteinQuickGO ontologyBLASTP
15396091540574966NAD-dependent epimerasedehydrataseQuickGO ontologyBLASTP
154057115415811011glycosyl transferase family proteinQuickGO ontologyBLASTP
154161615436432028polysaccharide biosynthesis protein CapDQuickGO ontologyBLASTP
154379915448691071dTDP-glucose 46-dehydrataseQuickGO ontologyBLASTP
15448661545771906dTDP-4-dehydrorhamnose reductaseQuickGO ontologyBLASTP
15457681546649882glucose-1-phosphate thymidylyltransferaseQuickGO ontologyBLASTP
15472731548235963hypothetical proteinBLASTP
154888815501141227putative group 1 glycosyl transferaseQuickGO ontologyBLASTP
155011115513581248glycosyl transferase group 1 proteinQuickGO ontologyBLASTP
155134615531091764hypothetical proteinBLASTP
15531571553540384hypothetical protein
155355715553861830hypothetical proteinBLASTP
155592415622626339type 12 methyltransferaseQuickGO ontologyBLASTP