Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:574437 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
57443757464921350S ribosomal protein L31PQuickGO ontologyBLASTP
574676575476801nucleaseQuickGO ontologyBLASTP
5754735769091437peptidase M48 Ste24pQuickGO ontologyBLASTP
5770145782821269malate dehydrogenaseQuickGO ontologyBLASTP
57834858075924121A family penicillin-binding proteinQuickGO ontologyBLASTP
5809415820051065type IV pilus assembly protein PilMQuickGO ontologyBLASTP
582005582577573fimbrial assembly family proteinQuickGO ontologyBLASTP
582574583194621pilus assembly protein PilOQuickGO ontologyBLASTP
583191583718528pilus assembly protein PilQQuickGO ontologyBLASTP
5837745858942121type IV pilus secretin PilQQuickGO ontologyBLASTP
585927586418492shikimate kinaseQuickGO ontologyBLASTP
58659458769711043-dehydroquinate synthaseQuickGO ontologyBLASTP
5877085893091602sporulation domain-containing proteinQuickGO ontologyBLASTP
5895475939954449glutamate synthase subunit alphaQuickGO ontologyBLASTP
5940305954481419glutamate synthase subunit betaQuickGO ontologyBLASTP
5955675966341068uroporphyrinogen decarboxylaseQuickGO ontologyBLASTP
596765597535771cobyrinic acid ac-diamide synthaseQuickGO ontologyBLASTP