Pre_GI Gene

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Host: NC_009439 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009439:4267356 Pseudomonas mendocina ymp, complete genome

Host Lineage: Pseudomonas mendocina; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Soil and subsurface bacterium. Strain ymp was isolated as part of the Yucca Mountain Project from sediment in a surface holding pond of a drilling operation at the Nevada Test Site, NV, USA (the proposed site of the high-level nuclear repository). Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. Pseudomonas mendocina is a pentachlorophenol (PCP)-degrading bacterium was isolated from PCP-contaminated soil. It is able to act as a bioremediation agent without the accumulation of inhibitory toxic compounds.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
426735642686241269peptidase M14 carboxypeptidase AQuickGO ontologyBLASTP
42687794269243465bacterioferritinQuickGO ontologyBLASTP
426936142715112151catalaseperoxidase HPIQuickGO ontologyBLASTP
427169442730731380NaH antiporter NhaCQuickGO ontologyBLASTP
4273274427366038750S ribosomal protein L17QuickGO ontologyBLASTP
427370542747061002DNA-directed RNA polymerase subunit alphaQuickGO ontologyBLASTP
4274729427534962130S ribosomal protein S4QuickGO ontologyBLASTP
4275367427575639030S ribosomal protein S11QuickGO ontologyBLASTP
4275787427614335730S ribosomal protein S13QuickGO ontologyBLASTP
4276277427639311750S ribosomal protein L36QuickGO ontologyBLASTP
427642242777501329preprotein translocase subunit SecYQuickGO ontologyBLASTP
4277751427818243250S ribosomal protein L15QuickGO ontologyBLASTP
4278185427836418050S ribosomal protein L30QuickGO ontologyBLASTP
4278367427886750130S ribosomal protein S5QuickGO ontologyBLASTP
4278871427922135150S ribosomal protein L18QuickGO ontologyBLASTP
4279233427976653450S ribosomal protein L6QuickGO ontologyBLASTP
4279779428017139330S ribosomal protein S8QuickGO ontologyBLASTP
4280364428066930630S ribosomal protein S14QuickGO ontologyBLASTP
4280685428122454050S ribosomal protein L5QuickGO ontologyBLASTP
4281244428155831550S ribosomal protein L24QuickGO ontologyBLASTP
4281570428193836950S ribosomal protein L14QuickGO ontologyBLASTP
4281962428222826730S ribosomal protein S17QuickGO ontologyBLASTP
4282231428242219250S ribosomal protein L29QuickGO ontologyBLASTP
4282422428283541450S ribosomal protein L16QuickGO ontologyBLASTP
4282848428353468730S ribosomal protein S3QuickGO ontologyBLASTP
4283548428388033350S ribosomal protein L22QuickGO ontologyBLASTP
4283892428416727630S ribosomal protein S19QuickGO ontologyBLASTP
4284184428500882550S ribosomal protein L2QuickGO ontologyBLASTP
4285023428532230050S ribosomal protein L23QuickGO ontologyBLASTP
4285319428592160350S ribosomal protein L4QuickGO ontologyBLASTP
4285936428656563050S ribosomal protein L3QuickGO ontologyBLASTP
4286649428696031230S ribosomal protein S10QuickGO ontologyBLASTP
428711642883091194elongation factor TuQuickGO ontologyBLASTP
428834042904872148elongation factor GQuickGO ontologyBLASTP