Pre_GI Gene

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Host: NC_009438 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009438:2939478 Shewanella putrefaciens CN-32 chromosome, complete genome

Host Lineage: Shewanella putrefaciens; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Shewanella putrefaciens is a Gram-negative bacterium. It has been isolated from marine environments, as well as from anaerobic sandstone in the Morrison formation in New Mexico, USA. S. putrefaciens is also a facultative anaerobe with the ability to reduce iron and manganese metabolically; that is, it can use iron and manganese as the terminal electron acceptor in the electron transport chain (in contrast to obligate aerobes which must use oxygen for this purpose). It is also one of the organisms associated with the odor of rotting fish, as it is a marine organism which produces trimethylamines (hence the species name putrefaciens, from putrid). This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This species, along with Shewanella algae, are the only Shewanella spp. to be found in clinical speciments. Normally found in marine environments in warmer temperatures, infections seem to occur more frequently in countries with a warm climate and in other countries during warm summer months.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
29394782939780303excinuclease ABC subunit CQuickGO ontologyBLASTP
294065429420031350GAF sensor signal transduction histidine kinaseQuickGO ontologyBLASTP
29423772942823447copper resistance lipoprotein NlpEQuickGO ontologyBLASTP
294378729457271941polysaccharide biosynthesis protein CapDQuickGO ontologyBLASTP
29458582946412555sugar transferaseQuickGO ontologyBLASTP
29464272947350924NAD-dependent epimerasedehydrataseQuickGO ontologyBLASTP
29473432948284942glycosyl transferase family proteinQuickGO ontologyBLASTP
29483112949243933glycosyl transferase family proteinQuickGO ontologyBLASTP
294924529503931149hypothetical proteinBLASTP
29503862951231846glycosyl transferase family proteinQuickGO ontologyBLASTP
29513042952131828hypothetical proteinBLASTP
295219629534251230polysaccharide biosynthesis proteinQuickGO ontologyBLASTP
295340929545001092group 1 glycosyl transferaseQuickGO ontologyBLASTP
29546002955148549dTDP-4-dehydrorhamnose 35-epimeraseQuickGO ontologyBLASTP
29552202956095876dTDP-4-dehydrorhamnose reductaseQuickGO ontologyBLASTP
29560922956961870glucose-1-phosphate thymidylyltransferaseQuickGO ontologyBLASTP
295703229581111080dTDP-glucose-46-dehydrataseQuickGO ontologyBLASTP
29583272959316990lipopolysaccharide biosynthesis proteinQuickGO ontologyBLASTP
29595082959861354hypothetical proteinBLASTP
296005729628162760polysaccharide export proteinQuickGO ontologyBLASTP