Pre_GI Gene

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Host: NC_009438 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009438:212476 Shewanella putrefaciens CN-32 chromosome, complete genome

Host Lineage: Shewanella putrefaciens; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Shewanella putrefaciens is a Gram-negative bacterium. It has been isolated from marine environments, as well as from anaerobic sandstone in the Morrison formation in New Mexico, USA. S. putrefaciens is also a facultative anaerobe with the ability to reduce iron and manganese metabolically; that is, it can use iron and manganese as the terminal electron acceptor in the electron transport chain (in contrast to obligate aerobes which must use oxygen for this purpose). It is also one of the organisms associated with the odor of rotting fish, as it is a marine organism which produces trimethylamines (hence the species name putrefaciens, from putrid). This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This species, along with Shewanella algae, are the only Shewanella spp. to be found in clinical speciments. Normally found in marine environments in warmer temperatures, infections seem to occur more frequently in countries with a warm climate and in other countries during warm summer months.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
212476212787312plasmid stabilization system proteinQuickGO ontologyBLASTP
2128112158913081transposase Tn3 family proteinQuickGO ontologyBLASTP
215929216621693cointegrate resolution protein TQuickGO ontologyBLASTP
216839217246408MerR family transcriptional regulatorQuickGO ontologyBLASTP
217342218238897cation efflux system permeaseQuickGO ontologyBLASTP
218242218754513lipoprotein signal peptidaseQuickGO ontologyBLASTP
2187762200651290transposase IS204IS1001IS1096IS1165 family proteinQuickGO ontologyBLASTP
2203382214501113iron-containing alcohol dehydrogenaseQuickGO ontologyBLASTP
2214662228601395aldehyde dehydrogenaseQuickGO ontologyBLASTP
222857223366510hypothetical proteinBLASTP
223399223677279ethanolamine utilization protein EutNcarboxysome structural protein CcmlQuickGO ontologyBLASTP
223682224161480propanediol utilizationQuickGO ontologyBLASTP
224175224810636propanediol utilization proteinQuickGO ontologyBLASTP
224815225681867microcompartments proteinQuickGO ontologyBLASTP
225709225999291microcompartments proteinQuickGO ontologyBLASTP
226071226898828MIP family channel proteinQuickGO ontologyBLASTP
226933227853921glycyl-radical activating family proteinQuickGO ontologyBLASTP
2279922305352544pyruvate formate-lyaseQuickGO ontologyBLASTP
230560231375816microcompartments proteinQuickGO ontologyBLASTP
231372231674303microcompartments proteinQuickGO ontologyBLASTP