Pre_GI Gene

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Host: NC_008228 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008228:4915500 Pseudoalteromonas atlantica T6c, complete genome

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
49158754916318444hypothetical proteinBLASTP
49165434916842300hypothetical protein
491702749181181092hypothetical protein
49182144918546333diguanylate cyclaseQuickGO ontologyBLASTP
49186264919042417hypothetical proteinBLASTP
491959849212051608DNA-cytosine methyltransferaseQuickGO ontologyBLASTP
492138649231761791hypothetical protein
492319849246221425hypothetical protein
492477549265951821NERD domain-containing family proteinQuickGO ontologyBLASTP
492659549284901896hypothetical proteinBLASTP
492853849317533216helicase-likeQuickGO ontologyBLASTP
493176049340452286Superfamily I DNA and RNA helicases-likeQuickGO ontologyBLASTP