Pre_GI Gene

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Host: NC_008228 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008228:372520 Pseudoalteromonas atlantica T6c, complete genome

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
3725203743311812protein of unknown function DUF1446QuickGO ontologyBLASTP
374405375277873short-chain dehydrogenasereductase SDRQuickGO ontologyBLASTP
3753103769051596AMP-dependent synthetase and ligaseQuickGO ontologyBLASTP
3773763788871512hypothetical protein
380844381410567hypothetical proteinBLASTP
381516381950435hypothetical protein
381964382518555deoxycytidine triphosphate deaminaseQuickGO ontologyBLASTP
3825053839591455hypothetical protein
383970384455486hypothetical protein
38467038474677tRNA-ArgQuickGO ontology
384766385071306hypothetical protein
3852103865951386protein of unknown function DUF839QuickGO ontologyBLASTP
3867703879901221N-acylglucosamine 2-epimeraseQuickGO ontologyBLASTP
3880033892981296hypothetical proteinBLASTP
3895023919492448TonB-dependent receptorQuickGO ontologyBLASTP