Pre_GI Gene

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Host: NC_008044 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_008044:1401814 Silicibacter sp. TM1040, complete genome

Host Lineage: Ruegeria; Ruegeria; Rhodobacteraceae; Rhodobacterales; Proteobacteria; Bacteria

General Information: This strain was isolated from a culture of the dinoflagellate Pfiesteria piscicida CCMP1830 which has been implicated in many large scale algal blooms resulting in increased mortality in fish. The bacteria are attached to the surface of the dinoflagellate and in some ways allow the dinoflagellate to grow as those lacking the bacteria die off. The bacterium also chemotaxes towards the dinoflagellate product DMSP (dimethylsulfoniopropionate) and metabolizes it. DMSP is a major source of sulfur in marine ecosystems and plays a role in the sulfur biogeochemical cycle. The implication is a tight association between these important dinoflagellates and this marine bacterium.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
14018141402140327hypothetical proteinBLASTP
14023911402690300hypothetical protein
14026871403685999hypothetical proteinBLASTP
14038881404421534hypothetical protein
14044141404701288hypothetical protein
14048821405148267hypothetical protein
14051841405507324hypothetical protein
14058031406438636putative phage repressorQuickGO ontologyBLASTP
14067991407716918hypothetical protein
14077231408715993AnkyrinQuickGO ontologyBLASTP
14091541409492339hypothetical protein
140989014120402151hypothetical proteinBLASTP
14127501413019270hypothetical protein
14131071413550444hypothetical protein
14136931414379687hypothetical proteinBLASTP
141483014158311002phage integraseQuickGO ontologyBLASTP
1415927141601185tRNA-LeuQuickGO ontology
1416226141629974tRNA-GlyQuickGO ontology
14163831416856474thioesterase superfamilyQuickGO ontologyBLASTP
141688714175586726-phosphogluconolactonaseQuickGO ontologyBLASTP
14176591417928270Usg-likeQuickGO ontologyBLASTP
141811914208572739DNA gyrase A subunitQuickGO ontologyBLASTP
14209881421338351hypothetical protein