Pre_GI Gene

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Host: NC_007912 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007912:1173752 Saccharophagus degradans 2-40, complete genome

Host Lineage: Saccharophagus degradans; Saccharophagus; Alteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: This strain is a marine gamma-proteobacterium that was isolated from decaying Spartina alterniflora, a salt marsh cord grass, in the Chesapeake Bay, USA. Saccharophagus degradans 2-40 has been used to produce ethanol from plant material and may be useful for the production bioethanol. Bacterium able to degrade complex carbohydrates. Saccharophagus degradans is capable of degrading insoluble complex carbohydrates through the collective action of enzyme complexes found on its cell surfaces, utilizing the degradation products as a carbon source. This organism may be useful in bioremediation. The degradative enzymes this organism produces are typically exoenzymes that are collected and organized into large surface complexes termed cellulosomes.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
117375211754791728Pectate lyaseAmb allergenQuickGO ontologyBLASTP
11756271176094468Pectate lyaseAmb allergenQuickGO ontologyBLASTP
11761661176573408DNA-binding protein HU putativeQuickGO ontologyBLASTP
11770981177334237hypothetical proteinBLASTP
117740911791931785aspartyl-tRNA synthetaseQuickGO ontologyBLASTP
117934211805711230Alanine racemaseQuickGO ontologyBLASTP
11805641181562999Biotin--acetyl-CoA-carboxylase ligaseQuickGO ontologyBLASTP
11815591182341783transcriptional activator putative Baf familyQuickGO ontologyBLASTP
11824901183161672hypothetical proteinBLASTP
11840031184368366secretion protein SecEQuickGO ontologyBLASTP
1184012118408776tRNA-ThrQuickGO ontology
1184174118424976tRNA-TrpQuickGO ontologyBLASTP
11843791184912534TonB-dependent receptorQuickGO ontologyBLASTP
11850741185505432Parallel beta-helix repeatQuickGO ontologyBLASTP
11855071186202696transcriptional regulator GntR familyQuickGO ontologyBLASTP
1186486118701653150S ribosomal protein L10QuickGO ontologyBLASTP
11870771187457381ribosomal protein L7L12QuickGO ontologyBLASTP
118768011917654086DNA-directed RNA polymeraseQuickGO ontologyBLASTP
119185911960914233DNA-directed RNA polymeraseQuickGO ontologyBLASTP