Pre_GI Gene

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Host: NC_004578 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004578:3921199 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
392119939228751677NADH dehydrogenase subunit NQuickGO ontologyBLASTP
39228723923360489potassium efflux system protein PhaE putativeQuickGO ontologyBLASTP
39233573923635279potassium efflux system protein PhaFQuickGO ontologyBLASTP
39236323924012381potassium efflux system protein PhaGQuickGO ontologyBLASTP
39240343924441408hypothetical proteinBLASTP
39249463925185240hypothetical proteinBLASTP
392520639267741569hypothetical proteinBLASTP
392698439285851602methyl-accepting chemotaxis proteinQuickGO ontologyBLASTP
39293003929530231hypothetical proteinBLASTP
392957439316012028Rhs element Vgr proteinQuickGO ontologyBLASTP
39315983932446849hypothetical proteinBLASTP
39324723933272801lipoprotein putativeQuickGO ontologyBLASTP
393326939355452277lipase family proteinQuickGO ontologyBLASTP
39357703935886117hypothetical protein
39360173936421405dnaK suppressor protein putativeQuickGO ontologyBLASTP
393672539377501026sugar ABC transporter permease proteinQuickGO ontologyBLASTP
393779539393721578sugar ABC transporter ATP-binding proteinQuickGO ontologyBLASTP
39394423940371930sugar ABC transporter periplasmic sugar-binding proteinQuickGO ontologyBLASTP
39418523942220369hypothetical protein
394227039432891020oxidoreductase GfoIdhMocA familyQuickGO ontologyBLASTP
39433553944215861iolH proteinQuickGO ontologyBLASTP