Pre_GI Gene

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Host: NC_004129 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:4368356 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
436689643683591464hypothetical proteinBLASTP
436835643696571302hypothetical proteinBLASTP
43696444370105462hypothetical proteinBLASTP
43701374370745609hypothetical proteinBLASTP
43711864371416231hypothetical proteinBLASTP
43714744371788315holin lambda familyQuickGO ontologyBLASTP
43726684372946279hypothetical protein
43730554373750696hypothetical proteinBLASTP
43737474374337591ninG proteinQuickGO ontologyBLASTP
43743374374924588phage D3 proteinQuickGO ontologyBLASTP
43749174375717801hypothetical proteinBLASTP
43757044376678975hypothetical proteinBLASTP
437709643781151020hypothetical proteinBLASTP
43783444378748405hypothetical protein
43787514379302552hypothetical proteinBLASTP
43795764380364789transcriptional regulator CroCI familyQuickGO ontologyBLASTP
43805194380965447hypothetical proteinBLASTP
43841084384341234hypothetical proteinBLASTP
43848494385280432hypothetical proteinBLASTP
43852684385468201hypothetical proteinBLASTP
43854654385665201hypothetical protein
43856624385835174hypothetical protein
43859754386721747hypothetical proteinBLASTP
43867484387281534hypothetical proteinBLASTP