LOCUS NC_011250:1 9211 bp DNA linear BCT 26-AUG-2011 DEFINITION Borrelia duttonii Ly plasmid pl40, complete sequence. ACCESSION NC_011250 SOURCE Borrelia duttonii Ly plasmid pl40, complete sequence. COMMENT locus start: 1; locus end: 9211 FEATURES Location/Qualifiers source 1..9211 /organism="Borrelia duttonii Ly plasmid pl40, complete sequence." gene complement(249..1100) /gene="" /locus_tag="" /db_xref="250..1101" CDS complement(249..1100) /gene="" /locus_tag="" /product="" /translation="VRKNLFILLVLGLASCNLDSKLLDNKGRPDNFLKDVVNNVQDVV NDVQGDEPIKKDFVDKVSVKKVVGGDSVIKDEKGELVSALINDINSVMGLLNQDKAEV EDANQYGMKDEVFKFVLNDVNGKTLDHDDNKEVRRLFYSSLLYNKARIEDFAEILKKV ESDNTNKGTWIQDIMNAVVVDLQFGFERIINKLEENREQLDKLSLVDLREIKSKLEEM QLQKLNWRKAIDSLISSYKAKADGIDSDSKKLIEHIEQKYKDLIKVKTPGMKAVSNRI IAILGTI" gene complement(1739..1975) /gene="" /locus_tag="" /db_xref="1740..1976" CDS complement(1739..1975) /gene="" /locus_tag="" /product="" /translation="VLRAIAKGGKFANGNSNTDISTAIRGATTSAVTKALDTLTIAIR SAIDEGLKTIKEAMKINTNATPVASGNSGSGSQN" gene 1815..2408 /gene="" /locus_tag="" /db_xref="1816..2409" CDS 1815..2408 /gene="" /locus_tag="" /product="" /translation="MVLSPSSIALLIAIVNVSNALVTALVVAPLIAVEISVLLFPLAN LPPLAIALNTIPPAIVASFALLASAPKGKEELRKEEESRKGRMERIKGIVMVMVMMVV MGCNSGVVEAEQGKNKFLKSLVNVSEEFLNVFTSFGEMVGSVLGLRVESKKSDVGKYF KAIQETIEGVKTGLNKIVAEMKEEKNPNAEGVESAVK" gene complement(2404..2709) /gene="" /locus_tag="" /db_xref="2405..2710" CDS complement(2404..2709) /gene="" /locus_tag="" /product="" /translation="VYVIKASFICFLLSSPALAPLELLPSLAFLSSPATGDELLGNVA TVGAGATGAKGEIGNLIRGIKNIVDIVLKNEGNAVIPLASLAVFAPSIILSSLLSTN" gene complement(2768..3898) /gene="vlp-a_1" /locus_tag="vlp-a_1" /db_xref="2769..3899" CDS complement(2768..3898) /gene="vlp-a_1" /locus_tag="vlp-a_1" /product="vlp protein, alpha subfamily" /translation="MKKLIMNINKEARRMNIEKKGEGKVRVILLMMMMVMMGCNSGGV KGEGTGGGVKSLSEVLLEVGRSAENVFYSFLELVSDSLGFAVKATTKKNEVGNYFDRL GKKLEIASGELEKVAEKASADVDKEGMLNKGIRAAVDSAKMTLSILKGHLESLKGIGD VNVVGEAASNAQGVASSADELKSVFKALKGIVDIADKEDIEKLVAGDLAVKVGNNGTD NKDGVKILATDNKAGVNDAGKAAAVLTTVSGKEILASIVKSTEGDADTGVGDQATANT SAVAFAKGGNAANLAKEAAKAAAVSGGIVLRSLVKNGKLSSGAQDGQAGGKEEVQAVG ISAVNKLLVAVEDIIKKTVKNVLEKVKKEVDKARDPKAVGQQ" gene complement(4046..4958) /gene="" /locus_tag="" /db_xref="4047..4959" CDS complement(4046..4958) /gene="" /locus_tag="" /product="" /translation="REKNNYFLSYVVNFKKGF*KVFLFLVIWLPRH*E*RRIQRRKV* GNILVRLRIL*KQ*K*N*GRFWLRMGNMRK*KRR*RNLLGR*IRSKKEPRKQLNELQV MML*EALLKMVVKILHQQILRVSRHWLKGLKR**GWC*ERMREMQKLVRQEKMIKRIL GNYLKRKQVVQM*RQLRQVHQ*EQ*VELMFCKL*RSLVKLLIITKILKK*NMLQVLLL LKLLMTRKKLKIQQKKMQ**QQG*H*DQWQRMVNLRLRVTRNQQMQ*MVQ*QVQ*IRC *VH*Q*Q*GIEC*ERLNKEKVLLPKLMN" gene complement(5292..5669) /gene="" /locus_tag="" /db_xref="5293..5670" CDS complement(5292..5669) /gene="" /locus_tag="" /product="" /translation="MVVHNGPLVSGSYQIITSVNTKLKALELEAEKFDGMKAKILAAK TLGEGFLTKLKTAHSDIAKNDAQDTDVKKALVKDNGDKTKRAEELGKLNTAINDFVNS AKELAENTIKKLTASTKKISTQS" gene complement(5756..6847) /gene="vlp-a_2" /locus_tag="vlp-a_2" /db_xref="5757..6848" CDS complement(5756..6847) /gene="vlp-a_2" /locus_tag="vlp-a_2" /product="vlp protein, alpha subfamily" /translation="MNKEKKGEGKVRVVILMIMMVMMGCNSGGVKGEGAGGGDGRGLS GAMMEVGRSAERAFYAFIELMSDVLGFTAKVDTKKSDVGNYFDSLGKKLGDASKELEE VAKKSETDTNKDDLSKNSIRKAVNSAKEILEILIEHLGSLKGIGDDNIVGEAASGGAA AVGTSVDETELKKALKALQEIVKVAQGVGVTELKAGTAALNVTGVDNKDGAKILATSG ADNPAATDAGKAAAILSSVSGKEILASVIASKENDAALGASADANTSAISFARGGSAN HLAGANTPKAAAVAGGIALRSLVKTGKLGKGAADNATGGGKEVQGIGVTAANKLLGAV EDIIKKTVKNVLEKAKEKIDEARNPKAAN" gene complement(7062..7849) /gene="" /locus_tag="" /db_xref="7063..7850" CDS complement(7062..7849) /gene="" /locus_tag="" /product="" /translation="EDSKREIRENCRRIWEI*ESER*GRGIYWGEISKIEEGAKEAAK GANEGIFICNAVQNQTAVAANKESIISLVKGIKAIFGIVLRDGEGSADASKTADGDKK DIGKLFADEDANRAQEADAAKASASIGAVSGADMLQSIVKSKENPSVYDTEGIEKAGD AAEIAVAKAVDGKKEIKEGAAKKDAVIAGGIALRGMGKEGKFAAKDGDDGKHANAVNG AVASNKVLSILVMAIRNRVDEGLKEINKVLGEIKQGEGSVVKIN" gene complement(8098..9210) /gene="vlp-c_1" /locus_tag="vlp-c_1" /db_xref="8099..9211" CDS complement(8098..9210) /gene="vlp-c_1" /locus_tag="vlp-c_1" /product="vlp protein, gamma subfamily" /translation="VRERGNRMDKMWDRMRIKGIILMMMIVMVCNSGGVGEAEQGKNK FLQSLVNVSEEFLNVFTSFGEMVGSVLGLKADSKKSDVAAYFKTVQDTVQGAKDGLNK IVAEMKKESNPHAAATETAVNKLVSETLDKIITGAKTASEAIGGDANDFIGNVAAGGA NGAGAGAKGDGVENLVKGIKSIVDIVLKNKGSAEAGDGKKADALGARGNNAGDAGKLF GNTDNNGAIAADAKKAAADAAKAVGAVTGADILQAISKNNGDSAKLANHNASAQVTGV ASDIKDAVIAGGIALRAMAKGGKFANEKDNANNDVVTAVRGAAVSAVSKALDTLTIAI REAMDLGLKEIKKVMKINNDTPVATSEKSGSGVKNQ" ORIGIN 1 aatattaaaa gatatattat ttattatatc agcccatgaa attattaata aacgcgggct 61 tagaacttta aggctaaccg ttattataaa agtaaaattt aaataagcca aagactcttt 121 tttacaatac atataaaata aattttttct accaaacttc acctaaaata cattttacaa 181 caaaaatata ggaagataga ctattattaa tttatcttcc tttgtatttt aataattata 241 agtaaattac ttaattgtac ctagaatagc tataattcta ttagatactg ccttcattcc 301 aggagtttta actttaataa gatctttata tttttgctca atatgctcta tcaatttctt 361 gctatcagaa tcaattccat ctgccttagc tttataagat gaaataagac tatctatggc 421 tttcctccaa tttaatttct gtaattgcat ttcttcaagc ttggacttaa tttctcttaa 481 atcaacaaga cttaatttat caagttgctc cctattctct tctaatttat taattattct 541 ctcaaaacca aactgaagat ctactactac agcattcatt atatcttgaa tccatgtacc 601 cttgtttgta ttatccgatt ctactttttt aagaatttct gcaaaatctt ctattcttgc 661 tttattgtat aacaaagagg aataaaataa tcgtcttact tccttattat catcatgatc 721 taatgtctta ccattaacat catttaacac aaatttaaac acttcatctt tcataccata 781 ttgatttgca tcctcaactt cagccttatc ttgatttaat aatcccataa cactattaat 841 atcatttata agggcagata ctaattcccc tttctcatct tttattacag aatctcctcc 901 tactactttt ttaacagaaa ctttatccac aaaatctttt tttattggtt catcaccttg 961 aacgtcattt acaacatctt gaacattatt tacaacatct tttaaaaaat tgtcaggtct 1021 tcctttatta tccaataatt tagaatctag attacaagac gctaacccca aaactaataa 1081 tataaataaa ttttttctca caaatattct ccttctttaa gaattaataa tcactattac 1141 taaatagtaa tgattattaa ttaataatat atatatcact ttatctaaaa tacaattttt 1201 ttaattaaaa ttactatttt ttatcaaaaa aatgatgaaa acatatttaa caatatgtac 1261 aaataatata attgaaataa atcctaaaga aattattaat ttttgtacaa attacctctt 1321 aatatcaaat agtataatat tctattatct acattaaaaa acaaaatttt actattgcta 1381 gacttttcta catttttaat atatacctat tatttaagac cttagtttcg ttagaagttt 1441 taatgtgttt ttataccatg ctaaatttat attacaatct tatgattcat tatattttta 1501 tacaaaattt tacaactata caactctatc ctatacaatt ttatacaata aaccgaatat 1561 ttttaattag aacatataca tcctatgaat ggataataac taacaaatta tagcaaataa 1621 aatatatctt tttagatatc ataaaacaaa agatactaag ggcttaattc tcagtatctt 1681 tactttataa cttaatttat atcattttat ttatcattta attatgtaat ttcgacttat 1741 tgattttgac taccagaacc actatttcca gatgcaacag gagtagcatt agtattaatt 1801 ttcattgctt ctttaatggt tttaagtcct tcatcaatag cacttcttat tgctattgtt 1861 aatgtatcta atgctttagt tacggcactt gttgttgctc ctctaattgc agtagaaata 1921 tcagtattac tatttccgtt agcaaactta ccacctttag ctatcgctct taacactata 1981 cctcctgcta tagttgcgtc ctttgcatta ttagcatcag cgccaaaagg taaggaagaa 2041 ttgaggaagg aagaggagag taggaaggga aggatggaaa gaataaaggg aatagtgatg 2101 gtgatggtga tgatggtagt gatgggatgt aatagtgggg tggtggaagc agagcaagga 2161 aagaataaat ttttgaagtc attagttaat gtgagtgaag aatttttgaa tgtttttaca 2221 tcatttgggg aaatggtggg gagtgtattg gggttgcgtg ttgagagtaa gaagtcggat 2281 gtagggaagt attttaaggc aattcaggag actatagaag gagttaaaac aggacttaat 2341 aagattgttg ctgaaatgaa ggaagaaaaa aatccaaatg ctgagggagt agagagtgca 2401 gttaaacatt agttgagagt aaactagata agataataga aggagcaaag actgctagtg 2461 aggctagtgg tattacagca ttaccctcat ttttcagcac tatatctact atatttttta 2521 ttccccttat caaattacca atttcacctt tagcacccgt agcacctgca ccaacagtag 2581 caacattacc aagtagttca tcacctgtag ctggggatga taaaaaggct aaagatggta 2641 atagttcaag gggagctaat gctggtgaag aaagcaaaaa acaaataaat gaggctttaa 2701 taacatacac aatactgcaa ataaaaaaag agagctttat cgctcccttt gctaactata 2761 ttcaagtctt actgctgccc cactgctttt ggatctcttg ccttatctac ttctttcttt 2821 actttctcaa gtacattctt aactgtcttt tttattatat cttctactgc tactaatagt 2881 ttatttactg cacttatccc tactgcttgt acttcttcct tccctcctgc ttgtccatct 2941 tgtgctcctg atgacaattt accattctta actaatgatc gtaacactat tcctcctgat 3001 actgctgctg ctttagctgc ttcttttgct aaattagcgg cattacctcc ttttgcaaac 3061 gccaccgcac ttgtatttgc agttgcctga tctcctactc ctgtatccgc atcaccctct 3121 gttgatttaa ctattgatgc taaaatttcc ttgccactta ccgttgttaa tactgctgct 3181 gctttacctg catcatttac ccccgctttg ttatctgtag ccaatatctt aactccatct 3241 ttattgtctg ttccattatt acctactttt actgctaaat ctcccgctac taacttctca 3301 atatcttctt tatcagctat atctactatt cctttcaacg ccttaaagac actcttcaat 3361 tcatctgcac ttgatgctac tccttgggca ttagacgccg cttcacctac aacattgaca 3421 tcacctatcc cttttaatga ttctaaatgc ccttttaata tacttaaagt catcttagct 3481 gaatcaactg ccgctcttat tcccttattt aacatacctt ctttatcaac atctgccgat 3541 gctttttctg ctactttctc taattctcct gatgcaatct caagtttctt accaagccta 3601 tcaaaataat ttcccacttc attcttctta gtagttgctt taacagcaaa tcccaaggaa 3661 tctgaaacca attccaaaaa tgaataaaaa acattctccg cacttcttcc tacttccagc 3721 agtacctcac ttaaactttt aactcctcct cctgttcctt ccccttttac tcccccacta 3781 ttacatccca tcatcaccat catcatcatc aataatatta ctcttacttt cccctctcct 3841 tttttctcta tattcattct tctagcctcc ttatttatat tcattattag ctttttcata 3901 gcttttcttt aaggattaga aaaaaatgat ttatataaca catacaatac cgcaaataaa 3961 aaaagagagc tattttgctc tcattaacta agtttttatt aaaaaattta attatattct 4021 aaactgtact agctatctta ttcttttatt cattaatttt ggcaacagaa ccttctcctt 4081 gtttaatctc tcctaacact ctattcctta ttgctattgt caatgtactt aacatcttat 4141 tcactgcact tgctactgca ccatttactg catttgctga tttctcgtca cccttagccg 4201 caaatttacc atcctttgcc attgatctca atgctatccc tgctgctatt actgcatctt 4261 tttttgctgg atctttaatt tctttcttgt cattaacagc tttagcagca gcaatacctg 4321 cagcatattt tacttcttta atatttttgt tattatcagc agtttcacta gacttcgcta 4381 tagcttgcaa aacatcagct ccacttactg ctcctattga tgcacttgcc ttagctgcct 4441 ctacatctgt accacttgct ttcttttcaa ataatttccc aatatccttt ttatcatttt 4501 ctcctgtctt actagcttct gcatttccct cattctctcc taacaccacc cctactatct 4561 ctttaatccc tttaaccaat gccttgacac tctcagaatc tgctggtgca ggatcttgac 4621 caccatcttt agtagcgcct cctataacat cattacctgc agctcattta gctgcttcct 4681 tggctccttc ttcgatctta tctatcttcc caataaattc ctctaccttc tctttcactt 4741 tctcatattt cccattctca gccaaaatct cccctaattt tacttttact gttttcatag 4801 tattctcaat cttactaaaa tatttcccta taccttcctt ctttgtatcc tcctttattc 4861 ttaatgtctc ggtaaccata tcaccaaaaa caaaaaaact ttttaaaaac cttttttaaa 4921 attaaccaca tagcttaaaa aataattatt tttttctcta tcatctatga tcacaacaaa 4981 acactaaatg caaagtcacc attatttatc atttttctta atttatttat tttatctatt 5041 aatttgctca tatatcttaa aatcctagtt tataataaca acacaatcac tagtctaaat 5101 cttgcaatta atctacattc aatctaatca ataagcaaaa tttatacata aaaacaaata 5161 accctaaata acaacaaaaa ctaagaacac tatgctccta gtttgttttt tcttaattta 5221 attttttcag tcattaagtt actttacctt ttaattaaat attaatctta taataattac 5281 ttaaattatc taacttgact gagtagaaat ctttttagta gatgctgtaa gcttcttgat 5341 tgtattttct gcaagttctt tggctgaatt tacaaaatca ttaatcgctg tatttagttt 5401 accaagttct tccgctctct tagtcttatc accattatct ttaactagag ctttttttac 5461 atcggtatct tgagcatcat ttttagcaat atcagaatga gctgtcttca atttagttaa 5521 aaatccttcc cctaaagtct tagcagctaa aatcttagcc ttcattccat caaacttttc 5581 agcctctaac tccaatgctt tcaattttgt atttacagaa gttattattt gatatgaccc 5641 agaaaccaac ggtccattat gaactaccat atagaaatag aagaaaatct aaatgtatct 5701 ctagatctcc tcctattctt aattttaagt taagtaactt aatatctatc ttattgttaa 5761 ttagctgctt ttggatttct tgcttcatct attttttctt ttgctttttc aagaacattc 5821 tttactgtct ttttaattat atcctctact gctcctaata acttatttgc cgcagttact 5881 cctattcctt gtacttcttt tcctcctcct gtagcattat ccgctgctcc ttttcctaat 5941 ttacctgtct taaccaatga tcgtagcgct ataccacctg ctaccgctgc tgctttcgga 6001 gtatttgcac ctgctaaatg atttgctgat cctcctcttg caaaagaaat tgcacttgta 6061 tttgcatctg cagacgctcc taatgctgca tcattctctt ttgacgcgat tactgatgct 6121 aaaatttctt taccacttac acttgatagt atcgctgctg ctttacctgc atctgttgct 6181 gcaggattat cagcaccact tgtagccaat atcttagctc catccttatt atctactccg 6241 gtcacattta atgccgcagt ccctgctttt aactctgtaa cacctactcc ctgtgcaact 6301 ttcactatct cttgcaatgc cttaagagct ttttttaatt cagtttcatc tactgatgtt 6361 cctactgcag cggcaccacc acttgctgcc tcacctacta tattgtcatc tccgatccct 6421 tttaaagacc ctaaatgttc tatcaatatc tctaaaattt ccttagctga attaactgcc 6481 tttctaattg aattctttga taaatcatct ttattagtat ctgtctctga tttttttgcc 6541 acctcttcta actcttttga agcatctcca agcttcttac ctagactatc aaaataattt 6601 cctacatcac tcttctttgt atccactttt gcagtaaatc ccaatacatc tgacattaac 6661 tctataaatg cataaaatgc cctttctgca cttctcccta cttccatcat tgctccactt 6721 aatcctctcc cgtctcctcc tcctgctcct tctcctttca ctcctccact attacatccc 6781 atcatcacca tcattatcat taatatcact actcttactt tcccctctcc ttttttctct 6841 ttattcattc ttctagcctc cttatttttt atttttttct agctacttta tagcttttat 6901 ttaaaatcaa aaaacaaata aatggggctt tatataacat acacaatacc acaaataaaa 6961 aaagagagct tgatttctct cattaactaa atttttattt aaaaaattta actatattct 7021 caattttatc ctaatgatct tattcttatc ttattctttt attcattaat tttgacaaca 7081 gacccttctc cttgtttaat ctctcctaac accttattta tctcttttaa tccttcatcc 7141 actctattcc tgatcgccat caccaatata ctcaacacct tattacttgc tactgctcca 7201 ttcactgcat ttgcatgttt accatcatca ccatccttag ccgcaaattt accttccttt 7261 cccatccctc tcaatgctat ccctcctgct attactgcat ctttctttgc tgccccttcc 7321 ttaatttctt tcttgccatc aacagcttta gcaactgcta tctctgctgc atctccagct 7381 ttctcaattc cctcagtatc ataaacagaa ggattctctt tagatttaac tatagattgc 7441 aacatatcag caccacttac tgctcctatt gatgcacttg ccttagctgc atctgcttct 7501 tgagctctat tagcatcttc atctgcaaac aacttcccaa tatccttctt atcaccatct 7561 gccgtcttac tagcatctgc actaccttca ccatccctta acactattcc aaaaattgcc 7621 ttgattcctt tgactaatga aataatagat tctttattag cagcaactgc agtctgattt 7681 tgaacagcat tacaaataaa aatgccttca ttagcaccct ttgctgcttc cttggctcct 7741 tcttcaatct tacttatctc cccccaataa attcctctac cttacctttc actttctcat 7801 atttcccata ttctcctaca attttcccta atttctcttt tactatcctc cttaataatc 7861 gatattaaaa cttatcttta ataatgtatt gtcttttttt gtatgtacaa tttcataaaa 7921 taaataaact gaatatcttt cattatattt aaaaaacaca aataataaaa ttaataatat 7981 aaagcaatat atctttactc aacacaccat aaaataaaag atacaaagag cttaactctt 8041 agtatcttat ctttacaact ttatttttct tattttttat ttacttatat aattttgatt 8101 attgattttt aacaccagaa ccactcttct cagatgttgc tacaggagta tcattattaa 8161 ttttcatcac tttttttatt tctttaagac ccaagtccat tgcttctctt attgctattg 8221 ttaatgtatc taatgcctta cttactgcac ttactgctgc tcccctaacc gcagtaacaa 8281 catcattatt agcattatcc ttctcattag caaattttcc tccctttgcc atcgctcgca 8341 atgctatccc ccccgctata acagcatctt taatatcaga agcaacacca gtaacttgag 8401 cagaagcatt atgattagct aacttagctg aatcaccatt atttttagaa atagcttgca 8461 atatgtcagc tccagtaacg gccccaactg cttttgctgc atctgctgct gccttcttcg 8521 catctgcggc aatagcacca ttattatcag tattaccaaa taattttcct gcatcaccag 8581 cattattacc tcttgcccca agagcatcgg cttttttacc atctccagcc tcagcacttc 8641 ctttgttctt aagtactata tccacaattg atttaatgcc ctttactaaa ttttcaacac 8701 catcgccctt agctccagca ccagcaccat tagcaccacc agcagcaaca ttacctatga 8761 agtcattagc atcaccacca attgcctcac ttgctgtctt tgccccagta attattttat 8821 caagtgtttc actaactaat ttatttactg cagtctcagt agctgcagca tgaggattac 8881 tctctttttt catttcagca acaattttat taagcccatc cttggctcct tgcacagtat 8941 cttgaactgt cttaaagtaa gcagcaacat cggacttctt agaatcggcc ttcaatccca 9001 atacactccc caccatttcc ccaaatgatg tgaaaacatt caaaaattct tcactcacat 9061 taactaaaga ttgcaaaaat ttatttttac cttgctctgc ttctcctact cccccactat 9121 tacataccat cactatcatc atcatcaata ttattccctt tattctcatt ctatcccaca 9181 tcttatccat tctattccct ctctctctca c //