>NC_009439:4404942:4404942	RNA polymerase sigma factor RpoD
MSVKAQQQSRLKELISRGREQGYLTYAEVNDHLPEDISDPEQVEDIIRMINDMGINVFESAPDADALLLAEADTDEAAAEEAAAALAAVETDIGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEEGIREVMSAIAHFPGTVEGILAEYNRVTTEGGRLAEVLSGYIDPDDGSVPDEAAAPVPVKEGAAAEESDDEEDEESGDDEEEEGDGGPDPEEAARRFSAVAEQQEKVQKALKKHGRGSKQATEELAALAELFMPIKLVPKQYDALVTQVRDALDRLRAQERAIMQLCVRDARMPRADFLRLFPGNEIDMDWAADLAKGKAKYAEALGNLQGDIQRCQQKLADLEAECSLSLAEIKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELGERMEMPEDKIRKVLKIAKEPISMETPIGDDEDSHLGDFIEDSTMQSPIDVATVESLKEATREVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPTRSEHLRSFLDE
>NC_009439:4404942:4406940	diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(s)
MPRLPAILLLCLAYWTTPALALTLSEEERTWLAAQAELRLGVDTSWPPFEFRDDQGRYQGLTADYVRLIESRLGLKLQPVEPSSWSEVLDQARAGQIHLLPGVMSTPERQDYLVFTRPYLDFPIVILARNGGPQPRKLRDLYGLKVAVVADYAPHELLRQQHPDLSLMPLPSVAAALQALATGQADALVGDLASSVWSLRQLKLDGLYISGETPYRYQLAMAAPRNHAILAGILDKLFAELSPAEVAALQTPWIGSVLDKRSAWREALPYGLPALLGLLAIIAIILRINRRLNSEMRNREALEQELRSREQHFRDMVESLSAITWEAESSGLTYTYVSPHAEKLLGYPLEDWLQPGFWQRHLHPDDQQRALRRCLEQCAAGEDHALEYRLLAADGHVVWVRDIVTLLQRGDQQVVRGLMIDISEAKQTEHALRLSEQKFASVFQQCPDILVIARRTDGVLLEVNAAFTEQTGVSVEQALGKTATELDIWGVPGIGPNLLLRLQDQNLRNLEMPFRRADGSLFTGLISAEAFQLDDVPALVVVVRDISQLKATQQQLQISEEKFARAFHASPDGLLISRMRDGLLIEANDGFTRITGYQLDEVANQSTLSLGIWADPQDRQRLVERIRQHGSVRDMIARVRTKSGQLRLCELSAQPLPVGGEDCLLTIARDITERQQMQEELQQAATVFESTAEGVMITDLEQRITAVNRAFTEITGYAEAEALGQRPSLLASGQHDQAFYNAMWHCLATNGHWQGEIWNRRKNGELYPEWLTISAVRNADNQITHFVGVFADISSLKHAQARLDHQAHHDPLTGLPNRLLFENRLRSALDGSRAEDRAGAVLFLDLDRFKQINDSLGHPVGDQLLRAIAARLKLQLRDIDTVARLGGDEFIILLPGLQQAEDADQVAQKLLDCFTAPFDIDHHEFFVSASIGISLYPKDGADVATLVKNADAAMYQSKAKGRNRSEFYTRSLTFQVNERMAMEQELRRALERDELCLYYQPKFCLRSQRLVGAEALVRWPHPVFGDIPPDRFIPVAEESGLILPLGDWVLQEACRQLQCWQENNQGFGTLSVNLAGAQLHQPSLVSRIGELLQQHGLAAGLLQLEITENFIMNQAGDALDILHRLKELGVQLAIDDFGTGYSSLSYLKRLPLDVLKIDQSFVRGLPDDPHDLAITRAIIALGQSMQLTVIAEGVETKAQELCLAAEGCLQIQGYVISRPLSAEAFTRKFLPPGQAVGAGENASV
>NC_009439:4404942:4410999	hypothetical protein
MLGNVLVGCAIRPEPEFMPKELPTAQVGATYDVRIDVINASTPAGRILDVPEGALPKGLSIIHTEREKYGFIRGVPEQAGTYEVLLYASTFGTQCAGQYAEITYRLEVTE
>NC_009439:4404942:4411533	XRE family transcriptional regulator
MTSLYDVSEMLKQARSDAKLSQEALASRAGVSRTTVARMETLAKGDMSVSALVRLLEAAGYDLKLVKAGHERTIEDILAEQRSGLDRP
>NC_009439:4404942:4411796	HipA domain-containing protein
MILDVHVSSRLVAKLYRERDEYVLKYLPGTALEDFVSLAMPVREEPWRWPRDLFPFFRQNLPEGYLLGVIREEFGPLLDGTDLSLLGVVGGTGIGRVSVTPEGVEPGVEMAPLEIEHLLKAENTSERFAALVRQYARVAVSGVVPKFIATDAVAPREPLGKPTVRTGFHIIKGSDETTPFLGFNEFYTMRVLERLNVVPVAACRMSDDGKVLVVDRFDVDEHGIPRYGVEDACELLGLPPHEKYAPTTERVWNATRAYIPADRLQAQREHLGWHLLTNYVVRNADCHAKNIALFYSSRADVGFTPVYDLVTTQAYPRFASNPPGLSVGGRQTWTPGRSLETFFKAVLGITPSKYAAMLEQLCESAVEVGKEVIEAAKNEPAWRDVAKHMVHAWNEGMETVRCPKAAPHFRGLDSAIEDAGFSGPRKPERSREVIGRSELLAKKR
>NC_009439:4404942:4413429	NERD domain-containing protein
MDYSPIVAQVWGMLTWFIPAALLIGLLKSPWAKGQIGELLVRLFAHWQLDKQTYRRLHNVTLNTPDGTTQIDHVFLSPYGVFVLETKNMGGWIFGSEKQPQWTQKLYKRTFKFQNPLRQNYKHLKALEATLGVNPEHLHSVITFVGGSTFKTEVPANVTQGIGFIRYIKSFQQPVFSEAEVDAMLQALQNGRRAPTLATHREHVQNLKRRSDPSAERQCPKCGSALLIRTVKSGAKAGQQFWGCSAFPKCRTMQSL
>NC_009439:4404942:4414352	hypothetical protein
MTEKVQVKAFPAKRFFVEMLTRDIELKDSLLDLLDNCIDGVMREKKDYLDDPLPYEGHTAHITFNKDEFKITDNCGGIPKGVALDRAFRLGRPDKETDSDIPTVGVYGIGMKRAIFKMGRQAVVSSFTEESSYVVSISPDWIDDDNNWTLPLTEIERKDEQTGVSISVSDLYPGVARLFSDATAFENDLIKSISAYYGNIILKGFNVFVNGQRVPPTGSSFILSQEAFNTGQGIAPYVYTGEVNGVSIEMAVGFYRNLPTDEEQEESLSGRPSTEQAGWTIICNDRVVLYADKTKVTGWGEAGVPQYHTQFVSIAGVVSFKSNDAARLPVTTTKRGIDGNSELYLSVKEFMREGMKLFTSYTNKWKVPSADRPELATPALASTAKSIAAMVPADKWSQDRKSTIKGNKFKPVLPTPEKNDEYRFMRFSRPLSDIRALGEHYFDDPDYAPGEIGGICFDEALKRIKE
>NC_009439:4404942:4415749	hypothetical protein
MSAGGSIPYHLRQNKAIERNLFIDLLARVGRYFNISDFQYIGFGGPFLEDFKHLHSSLRISNMISLEMDGNVFSRQKFNKPSSCIALRKESSSDFLNSFDFDATDNLIVWFDYATPQISEQLAELQQLVEKLSHGDIFKITVNATPVSLGHADAKAEMLSRRAETARIRLGEYAPAQITPNDVNTKNYPTLLLKALINAAKHGLAGDSSLVLEPLASFAYTDGQQMLTLCCVLLNTEERDQFFDRTRLRSWPFYNDCTQAPKSISVPVLSLKERVHVESMLPGATADEIFEDLNYYVGKDDQSARDEMSNFISFYRMYPWYSRVVI
>NC_009439:4404942:4416852	DNA-cytosine methyltransferase
MLTLLDLFSGCGGLTLGAKQAGFTTELAVDIDPILSSSFGLNFPSVPFLNADVTTLTSDRLKALLPSGVDGVIGGPPCQAFSGMGRGLADDPRRSLLGEFFRIVATVKPAFFMMENVPGLVFPANRPVLEEAIASLGGKWQIVGPVVLDASDFGAPTKRRRVFVFGFDKQRMRVPSLENLTQSDALRVNVHEAIGDLSASRAVRGNPNLWKYGPRKASAYAQKLRAQSGVFTGHQLTEHRAETVERFQSVPQGGVDPVGKYKRLAWDGLCPTLRAGTGSDRGSYQAVRPLHPVENRVITPRECARLQGFPDDFIFHPTVWHSCRMIGNSVSPIIAAALLSNIRAYLEHDSVATGREEQPLEMATT
>NC_009439:4404942:4418316	hypothetical protein
MPNRASRIDVSQLQLEQLWQRYQRVRAATERLCEPLEREDYVIQSMPDVSPPKWHLAHVTWFFEAFVLQPFLRGYRPLDERYDHLFNSYYKTHGTPFERARRGLLSRPTVSEVYAYRSHVDLAMEQLLNRMGSELDDEVLQRVELGLEHEQQHQELLLMDIKHILAQNPLRPVYRRDLKPGGTEASKLRWINFPAGLRHVGHAGEDFAFDCERPRHRVFVEAFRLASRPVSNGEYLEFIRDGGYRSTALWLADGWDHIQRAGWQAPLYWQREGDDWLELTLGGPRELDLDAPVCHLSYFEAEAFATWAQARLPREEEWEVAAQDEPLWGNFVENDHLQPVAAGTGDGLQQLYGDVWEWTASAYRPYPGFRPLGGSLGEYNGKFMSGQMVLRGGSCATPEDHVRPTYRNFFYPTMRWQFSGLRLAKEL
>NC_009439:4404942:4419602	methyltransferase type 12
MALAIRTHEQSISPEQEALREEALRGFAARPKAMSPKFFYDHSGSQLFELICQQPEYYLTRTEETILRLAAQDIAALAGRNASLVELGSGASRKVRLLLETLRPARYLGIDISREFLQICTRRLAADYRWLDVHALCADFSQPLTLPAEALGQRPLAFFPGSSIGNFDPDQARAFLRNLHQALPAGSGLLIGVDLIKDRKVLERAYNDAAGVTALFNLNLLERIRNELDSDIDPRRFQHRAFYNEAQSRIEMHLVSRQAQQVRIEDRVFDFAAGETLHTENSYKYTPSSFRALAGECGFACAAMWRDPAQLFSVHFLRRE
>NC_009439:4404942:4420804	hypothetical protein
VRLAELHGAPLGLFQYDLKECPMDLIRILIAILLPPLGVFLQVGFGGAFWLNILLTLLGYIPGIVHAVYIIAKR
>NC_009439:4404942:4421145	two component LuxR family transcriptional regulator
MEAPTMPERFQQERIIVADDHPVFRDGLSRIAQRVFAQAQVCEAGDMDEVLSLANAGAAPCLFILDLLFPGQSPQAIGALRQHFPCSSIVIVSMVDNRELIDEVMAAGADGFIGKATPPDDIAEALVAVRAGDFVMTLGPPGLPTFAEDRHLLEQLTPRQQEVLRLVVRGLSNKEIARQLDISPFTVRIHVSSLLRTLDVGTRAAAAAKGAKAGLS
>NC_009439:4404942:4421797	integral membrane sensor hybrid histidine kinase
MFAPASPTYDTERAQAVVRLIIAPIAIGYTLLLYQLALIETRLAGQIFTLAVIFCVVSLLLWHDIRRRPGNRPARRLFTMLNDYVCITLVIAAGGAAMLPVYAILVWVTVGYGLRYGSGYLLLATCMAMMSLAVTLATSPYWQTQPYLVITLALTTLSVPAYMHALLKRSRLAAEAEQAAILAKSQFLAQASHDLRQPIHSISLFTACLRDSSLGAEQRQLVENIDKSLHSVARLFRSILDMYSLDSGKVVPQMEPLALHAVLRQLLEQNAEAARWAGVEIRLRCPSVYVLADQGLLTTMLQNLLSNALKYAPGRPVLIGCRRHGETLSVELYDRGRGIAEEHLDGIFEEFYRVRQARDSDIEGMGLGLAIVRRLGALMHMQVRIRSVEGRGTLAAIDGLQPVAAPARAVAAQRSGMQAPRMLDGMRVCLIEDDRNVLLATATLLQKWGCEVATYSALPEASADFDLLITDFDLGSEVSGADCIRHVRAVSGQRVPAIVMTGHDVRRVQEELADTDIPVLPKPVQPAELRSLLVTFKLRAQAG
>NC_009439:4404942:4423611	hypothetical protein
MNIKGRLGALFIAPMLATLAGCLPQNAQNQGLHNTQMANDPCAPSATSSLVATGRSLLDIANSVLETQQSFNGSSTNYAQRVQAMENAQKLNQGHNVLNNVENLAGTANAPCVPAAAPASASR
>NC_009439:4404942:4424017	diguanylate cyclase
MVDGKHNDDRDVGTGHCEGLRESGKRTLMRTILLATGLTLGGFAVLQALAGNYPFAILEVLCTALLLFGAWRIERARHLYLWIYLYLIPTFCFILYIIVMPDASSAAFVWLYMIPLLAYLLLGKRRAFLLTAPFMLAGLLLYFSGNHLTLDTHGLIDLGNATLCGVLILVFVHIYDGLRMQAHEELERLAQTDSLTGVASRGSFQHALQRSIQEAERSSGHLVLVLLDVDHFKEVNDRWGHEAGDMALQHICQMLQQRLRVTDFLGRLGGEEFGLLLRHTDSTGAGPLVETLRRQLTERPLEYHGQPIALSATFGLAAWPEDGRSAAELYRSADRRLYRGKQRGRNQLVSSDLPAELLLDKFDVRF
>NC_009439:4404942:4425205	TRAP dicarboxylate transporter, DctM subunit
MSPDLWLILSFAVLLALGVPVAFALGLSGAIGIIAGLSPDMLATLGTNTYNGVAKYPLIAIPLFILTGLVFEKAGVALRLVRFAQALIGPRHGGLAVVAVLVCLIMGGMSGSGPADAAAVAMVMLPSMTKVGYPKPFSATLIAASASTAILIPPSIALILYSIVVPGVDLRALFAAGLFPGILAGLVLLLPAWLLSRRYGWESPERGERPPLGASFRQALPALFAPVLILGGLRSGLFTPTEAAVVGVTYGVLIGLFVTRELNWRSLWRLCGEAGVISGVVMLIIALAGIFAWAGTMLGTFRHLAEWLISLSDNGWVLLALVMLAVLLAGMLLDAISIYLILMPILIPVMQHFGWNPVWFGILLAMNIAIGQFTPPVAINLMVTAEVAKIRLEQTVGWALLFVLVMSSALLLVAIFPEIALWLPRVLGYAV
>NC_009439:4404942:4426490	tripartite ATP-independent periplasmic transporter DctQ
MSKQVDAPLERVLATLALVIISLISLANVVVRYFTDASFAFTEEISVFLLVILTFAGASVAMRSNRHIRIGLLERLFPRLRTPLILLQWLAGVLVLALVCWFGGQFAWEEFQWDSESPGLGLPNWWYVIWLPILALLVFVRLTQMTLDRLRGRISDEP
>NC_009439:4404942:4427124	TRAP dicarboxylate transporter, DctP subunit
MKLKRLFSALAVGAALTALCATAQAREYSVSTVLSDAFPWGQAAQKWADLVNERSAGRITLRVYPNAQLVAGDQTKEFSAMRSGLIDMAVGSTINWSPQVPELNLFSLPFLMKSDADLDAITQGEAGKLAFAAIEQRGIVPLAWGENGFRQLSNSARPVRSPADMAGLKIRVVGSPLFQDTFTALGANPTQMSWADAKPALTTGAVDGQENPLSVFDVARVDQVGQKYLTLWDYMADPLVFAVNQRVWKGLPEEDRELLRQAAIDAGKWEIELSRGAQAQRLADVRERGVDVIELSDAERAAFVEATASVQEKWAPRIGDALMDAARKAVAQP
>NC_009439:4404942:4428423	sigma-54 dependent trancsriptional regulator
MAISRDDLDQHGLIIGVSPERFRAVAMPLLFDHLDAQCEGTIAVNRQARIVWINDKYAQKVGISDPRSALGKEVEEVLPASRLREVVESGQPSMLDLMAFGDEHFVVTRIPLRDEDGTLVGALGFVLFDRARHLKPLMAKYANLQTQLLATQHELAKARRARYTIAGFIGASAAASEVKRQARRAAQLDATVLIRGETGTGKELLAQGIHNLSPRANGPFVAVNVAAIPETLVEAELFGTAPGAFTGAERKARIGKFEVANGGTLFLDEIGDLPLPLQAKLLRVLQEQEVEPLGSNQVKPLNVRVIAATHIDLEAKVAAGQFRDDLYYRLNVLALRVPPLRERASDIPALIEHLLDDLANRSGLAPMELSDDALALLCAQPWKGNVRELRNLLERAQLAVDGRLDGATVRSLLTDPVAPSAPLPLAAPMSGTAQTLAEQLAQAERQALLAALQATDGNRQQAAERLGISRAGFYAKLAQHGLGRRD