>NC_006905:1342474:1342474	Gifsy-1 prophage VhsJ
MGKGGGKGHTPREAPDNLKSTQLLSVIDAISEGPIEGPVNGLQSVLVNQTPVVDRDGNTNIHGVKVVYRVGEQEQTPLEGFESSGAETVLGVQVRHDNPVTRTITAANIDRLRFTFGVQSLVEANSKGDRNPTSVRLQIHLERYGQWVVEKEITITGKTTTQYLASVIVDNLPPRPFGIRMVRVTADSTTDQLQNNTVWSSYTEIIDVRQRYPNTAVIGLQVESEQFGSQQVTRNYHFFGRIIQVPSNYDPVARTYSGIWDGTFKPAYSNSPAWCLWDVLTHPRYGMGQRIGAADVDRWALYAIGQYCDQMVPDGFGGTEPRMTFNAYLAQQRKAWDVLTDFCSAMRCMPVWNGQRLTFVQDRPSDTVWTYTRNNVVMPDEGTPFRYSFSARKDRHNAVEVNWTDPDNGWQTSTELVEDTVAISHYGRNLVKMDAFGCTSRGQAHRAGLWLIKTELLETQTVDFSVGAEGLRHVPGDVIEVCDEDYAGISLGGRILSVDRDRRILTLDRAITLPSSGTTLISLVDGEGLPVSVDVQSVTDGVQVQVSRIPDGVAEYSVWGLKLPSLRQRLFRCVAIRENDDGTYAITAVQHVPEKESIVDNGASFDPQPGTIHGTVPPAIQHLTTEILAEEGQYQVLARWDTPRVVKGVSFSLRLNVAAEDGSDRLVSSAGTPDTQYRFRGLTSGHYTLSVRAVNSQGQQGDPASTQFSISAPAAPSFIELTPGYFQITATPRQAVYDPTVQYEFWFSDARITDIHQVENATRYLGTALYWIAASVNIRPGRDYYFYIRAVNQVGKSAFVEATGQASNDAAGYLDFFKGQITESHLGKELLEKVELTEDNASKLQQFSKEWQDANDKWNAMWGVKIEQTKDGKYYVAGLGLSMEDTPDGKISQFLVAADRIAYINPANGNETPGFVMQGDQIIMNEVFLKYLSAPTITSGGNPPAFSLTPDGKLTAKNADISGHINAVSGSFTGEINATSGKFSGVIEAREFVGDICGSKVMQGVSIRATNDERSTSTRYTDSATYQIGKTITVMANCERNGGSGAITVTININGQVKTGEVMPYTAGIPAMYQTVVFSVYTTSPVVDISVSLRVRGQYTTSASVWPLVMVSRSGSNFTN
>NC_006905:1342474:1345875	hypothetical protein
MTMSRVISLAAGLSLSVLFSTAAVADNGRGSGNSNIENQTRIYTGTDRGQKQHREAKGKTITRSVQCSLPAYLRDPDNQC
>NC_006905:1342474:1346171	side tail fiber protein
MPVLISGVLKDGTGTPVQNCTIQLKACRTSTTVVVNTVASENPDDAGRYSMDVEQGQYTVTLLVDGYPPSHAGVITVYDDSKPGTLNDFLGAMTEDDVRPEALRSFEAMVEEVARQASEASRNATAAGQASEQAQTSAGQASESATAAVNAAGAAEASATQAASSAASAESSAGTATTKAGEASASAASADTARTAAAASAAAAKTSEANADASRTAAGDSAAAAAASATAAQTSAERAGASETAAKTSETQAASSAGDAGASATAAAASEKAAAASAAAAKTSETNAATSASTAAASATAASSSASEASTHAAASDTSASLAAQSSTAAGAAATRAEDAAKRAEDIADVISLEDASLTKKGIVKLSSATDSDSEALAATPKAVKTVMGEVQTKAPLDSPAFTGTPTTPTPPDDAKGLQTANAEFVRKLIAALVGSVPESLDTLQELADALGNDPNFATTVLNKLAGKQPLDDTLTALSGKSVDGLIEYVGLRETISRATGAMQKDQNGGDIPDKKQFARTIGAVTSTTITFGESGWFKIATVFMPQTTSTAVIKLYGGSGYNVGSFEQGAISELVLRSGNGNPTGITATLWRRSPVAANEVAWVNTSGDTYDIYINIGQYAYWLIAQYDYTGNANVTLYSTPEYSSVQPGNSTSGQTYTIYSSLMKPTAGDVGALPITGGRLNGSLGIGTDNALGGNSIVFGDNDTGIKQNGDGILDTFANSQHTVRVAPGEMQVLGSIRAGNAKRMTMTSSNNSVLNAQFNLWGDGNRPTVIELDDDQGWHLYSQRNTDGSIQFVVNGQVIPDNYGNFDARYLTSGNVYTKGESDNRYVQNIQRGAPVWPGKVDEYGPAEAPAGCFLTQARHDPTTAYGVTFAYRPLQMWVGNGWRTING
>NC_006905:1342474:1346587	unknown protein encoded by prophage CP-933X
VDASDADDEAAVALAAAVLADVAAFVSDVFAAAADAAAAFSDAAAAVADAPASPALEAACVSDVFAAVSDAPARSADVCAAVALAAAAAAESPAAVREASAFASDVFAAAADAAAAVLAVSADAALADASPAFVVAVPALLSADAADEAACVADASAAPAAFTAAVALSDA
>NC_006905:1342474:1348575	hypothetical protein
LYASHYPPTFAAVDTQMSHHMLLLGHVWLVLKSNQQALLQVHIHLLCPAILERHAGYSGHNDYLIRLLYIRFLMLNNGRRNYRNYPE
>NC_006905:1342474:1348864	hypothetical prophage protein
MELKNVHRYIPDNPDYDSNFLYFRSEDGQDFYESLSKFTKKYKLCIDSENIIRSVSEDVSRLYPAGFSVVEVNKLPAGFNIYGDWKYSNGTILAVPVDYQAKAETTRQKLLDAANSAIADWRTELALGEISDDDKASLTKWMAYIRELKSLVLTGISDEATFNKIQWPVLSQ
>NC_006905:1342474:1350481	hypothetical protein
MGFPSPASDYVEPRLTVDILCGINANSWIVYTSDGYAVVDVSLIQRQGDTVLIRSDGALRFAKIMGQALIIDDGEAIEGEALDGVVVIGKVTYFISRINFSG
>NC_006905:1342474:1350920	SopB protein
LSERVRNMVGNHVTLPVCGRDVTFTLETVDAEMVERATMVWSGNERDQALLTQAALDDLIPSFLTSGQQNPAFGRKISGIIEVADGGRRRQTAIYTHSEYRVLVGDLDDEQMAWLSTIGNSYRQTSAYERGKRYARRLKNEFGDNVSKLAEAENISRKIIMRCIKTAELPRKIIALFSNPNELSARAGESLAKVYAGNEDAVLSFAQHLAKRQKDGESFETDEILKQLHDVAEKPTKPATRERLFGKGIKAKYKGDSVSFQLNNVSPVVIQKIETLLKEYQEEQQKLVSEAVDDAFVEIDTVTNFIRAAATGIDYDIPANELQTMIPFSRTVLKEHTNEADRIKRIADEITRRYII
>NC_006905:1342474:1351955	hypothetical protein
MVPDHVSHTLAQQERTLKFEGKHDVRVQVINGEPWFCLKDVCEILSVSVASPTRFQMSMEGVTKNVIPTGGGKQQLTFVNESNLYRVIFRSNKPEAR
>NC_006905:1342474:1352985	Periplasmic murein peptide-binding protein precurs
MLKMGITIIKPDYNENFITLRKVFMQNIISVICCILMISYFSLGYAADIPNGVVLAEKQELVRQIKDEPASLDPAKAVGLPEIQVIRDLYEGLVNQNKKGEIIPGVATQWRSNDNRTWTFTLRDNAKWSDGTPVTAQDFVYSWRRLVDPITLSPFSWFAVLAGITNAKSIINGKIAPDQLGVEAIDAHTLRIHLDKPLPWFARLTACFAFYPVQKKNVESGKEWTQPGKLIGNGAYVLTERVVNEKLVVEPNKHYWDNDKTVLQKVTFLPINQESEATNRYLAGDIDITETFPKIMYQQLMKNIPGQVYTPLTLGTGYYAFNTQKGPTADSRVRLALSMTINRRLITEKVLGTGEKPAWHFTPDITAGFTSTPSPFEKMSQEKLNAQAKSLLRAAGYGPQKHLNLRLLYNTSENNQKIAIAVASMWKKNLGVDVKLQNQEWKTYIDSRNNGNFDVIRASWVGDYNEASTFLSLLTSTHSGNISRFNNPAYDKIIMQAMTEHTLQTRNADYNAAERILREQAPIAPIYQETNGRLIKPWVKGYPITNPEDVAYSRTMYIIKHQ
>NC_006905:1342474:1354892	hypothetical protein
MPSWDFLKEGDVIDVIAPSSPIDNPQERYKKIEQYFKENTPFKINIPDHLIEPTALLDEANTIWKRAKFVYDAFCSESKAIWAISGGGWGASILGELMSYPKPDKIKPIIGYSDITALHIYANEYLNFPSIHSVVLGINGDIFPGYNKNGLGATLDILSGKKTDVIYELSPLNKFAASMTEVTGKIVGGNSLLVSALNGASGLSLKTKGKFLFLESIADDPGQFSRKLMGLAYSPVIKNCLGVIFGDVIKDGGKTNSPLVQSQFDYIIHRFSEKFIGDKIALKANNIFGHGAINMPLPLNTFAVIKRNGASIIATISANRV
>NC_006905:1342474:1355902	hypothetical protein
MSYKLLHQLFSKEIHGELPLYDLFSVGFLFSYYHEVNQHLFNKLHVDQL
>NC_006905:1342474:1356605	hypothetical protein
MEISLKTSVLIQKLMEIDKTVPFDADVVTGEEWWPIPISRVYHNPPHTFVEFETGEQSQDDPDELTIYSELEIRVHQMIQIRDFVQSNKNLQPEEIISELNVQIERLRAMAEANLKQ
>NC_006905:1342474:1357089	isocitrate dehydrogenase in e14 prophage, specific for NADP+
LLKMLLRHMQWFEAADLIVKGMEGAIAAKTVTYDFERLMDGAKLLKCSEFGDAIIANM
>NC_006905:1342474:1357713	putative cytoplasmic protein
MLKPICHSGSIKVPEYLETNKEKNAGRTPLSSDIQQVRNVVEDVPPFPESRTARGSVSAAYRLSFDEVFCGLSNEERKKVYGRLFGKQVLAHIHSRCQRDADIIREKALRRISRECGTEIDCTLLLNKMVDILQNARLTINFNAAKIDFVSLLKNKEYLNSYALGCRPGDLPAYNVGRDSVETKAFELEKFADSPYAPYGQTGGFSVAYTPNSKTFSPTSRPVYAALDFLNGENGGASAYGKSFFELNDNVKTNCTFSPFDIYGHRFGLDTSKLSTFWHMENLIASCQNDFFGYNCFKSLVKMAKGEKFLAHSNYGTGYEGNYIEAHIHGDVCLFRDIKHVYLSLQENSYSESQLYDYENK
>NC_006905:1342474:1358991	hypothetical protein
MDQQKRLLAAFHLKCWTSPVLQMKRPSQSSSGLYYHRSDLLAIDIPAHINDSISLFPVHCSPDQLTVQYMTVLFHFATPNFFLVALFYCAEFVPQNNNFKYLFEYFFL
>NC_006905:1342474:1359286	hypothetical protein
MKNFFKIITDFIADISLDLFAIFLCMLFVYKTGPSIGVISFFIALIIHIILHFVFYSFREKIIKKNIQISI
>NC_006905:1342474:1359823	putative envelope lipoprotein
MNKIHVTYKNLLLPITFIAATLISACDNDKDAMAEAEKNQEKYMQKIQQKEHQQSMFFYDKAEMQKAIANINAKGGANLAIIEVRFFKGGYSFIRQSVNTPAKVEMFKFNNGYWGGPSPVNLTIFGTITEEQKQEALKEALFKFDSINFSIIPERIQETIKRANASGIISVTEDSDIVVRAEIAHNGEFVYDITITAKNTARAVMTLNKDGSIAGYEIKEPFDPKKEAEKAQQLVEQSRKDIESQRKKAAEKMNEIQQTFKK
>NC_006905:1342474:1361101	Macrophage survival gene; reduced mouse virulence
MFVELVYDKRNVEGLPGAREIILNELTKRVHQLFPDAQVKVKPMQANALNSDCTKTEKERLHRMLEEMFEEADMWLVAE
>NC_006905:1342474:1361530	putative envelope protein
MTLLSGKTTLVLCLSSILCGCTTNGLPTPYSINLSFPVITQNQINSGGYYINDAEQIRTTDGLCLDTGPDQQNRLTLRECKHVQSQLFSFHRDRITQGEKCLDAAGQGTKEGTPIILYSCTGNDNQRWLTDDNKIKGKQSRKCLGTNSIIVRKGDPVVLADCDFSRALEFTIR
>NC_006905:1342474:1362466	cold shock protein-like protein
LSRKMTGIVKTFDCKSGKGLITPSDGRKDVQVHISSCRQHETEALIPGIRVEFCRINGLRGPTDANVYLS
>NC_006905:1342474:1362810	PhoP regulated
MSMTFHNLGDELHKSLYITGGAMKHHAFMLWSLLIFSFHVLASSGHCSGLQQASWDIFIYDFGSKTPQPPTNTDKKQARQISSPSCPTTKPMMSAPVNDARKGNTLSRT
>NC_006905:1342474:1363885	PhoP regulated: reduced macrophage survival
MKNIILSTLVITTSVLVVNVAQADTNAFSVGYAQSKVQDFKNIRGVNVKYRYEDDSPVSFISSLSYLYGDRQASGSVEPEGIHYHDKFEVKYGSLMVGPAYRLSDNFSLYALAGVGTVKATFKEHSTQDGDSFSNKISSRKTGFAWGAGVQMNPLENIVVDVGYEGSNISSTKINGFNVGVGYRF
>NC_006905:1342474:1365664	putative periplasmic protein
MMKRKLIPFTLFLAALSASSTSIAASQEISKSIYTCNDNQVMEVIYVNTEAGNAYAIISQVNEMIPMRLMKMASGANYEAIDKNYTYKLYTKGKTAELVEGDDKPVLSNCSLAN
>NC_006905:1342474:1366077	conserved protein in the LexA regulon
MNAVVCLFTDEKCARKAYYNLSITDICDE
>NC_006905:1342474:1366221	putative periplasmic protein
MIVTTAQYYGIKTEENGTVHCLVSYGICQ
>NC_006905:1342474:1366386	putative lipoprotein
VKKWLIGGILIASFLTGCLMWHNIDKWFNKDIEFFYVGDDS
>NC_006905:1342474:1366643	hypothetical protein
MVAKNKIHGRRIRQSLQQLHHRCLFQQLAVSPPGAKYVSVTAETKNWLIHLVTSEGL
>NC_006905:1342474:1367132	putative molecular chaperone (small heat shock protein)
MMALRTLSALPVFADSLFPDRFNRIDRLFSQLTGDTPVAATPAYDLQKRDANNYLLTVSVPGWKEEELEIETVGGNLNITGKHTEETVEDQTHWIYRGIRKADFQLSFSLPEHAKVNNAKLEQGLLLVEIYQEIPESEKPKKIAIESKPKAIEHKL
>NC_006905:1342474:1367711	putative inner membrane protein
VKTINRYTNLYSGIAPITGRMSRVDKNWTDLADNSNLPPSNGDEVSGTG
>NC_006905:1342474:1367941	putative cytoplasmic protein
MKLVLVNRQVILPESGTESFQCHASTLVRLPCGTLVAAWFAGLREGSEDTAIWLSRYEHNIWTTPQRVAAREGEAHWNPVLFYPSDKLWLFYKVGSDVHVWKTWFITSSDRGFTWSTPAPLVNDDILPRGPVKNKLLLASNGAWIAPGSIESPERWRVFVDRSSDEGKHWNISFVPLEPDNAISETNVALWDGVKKGMLWECCLENLLRWDGVIQPTLWESSPGHIHMLLRSTRGAIFRSDSIDYGATWSVARATSLPNNNSGIDLVSMQDGTLILALNPVNGNWGKRYPLSLIASQDNGESWLPLLDLESDHGEYSYPAIISAGGVVHITYTWNRKNIVYCRLQTV
>NC_006905:1342474:1369069	putative inner membrane protein
MAHFSRLQITLHWLTLLLTGIAYAAIELRGWAPKGSSVYLFMKDTHYDMGVLVWALMFLRLYLKHKYPDPVITPPPPHWQHVAAKLMHIALYLTFLALPLLGVAMMASGGKSWSFFGFTVPVFLTPDSTLKSDIKRIHEMLANIGYFLIAMHAAAALFHHYIQKDDTFSRMLPGK
>NC_006905:1342474:1369745	putative outer membrane lipoprotein
MTNKKHIFSIIFIGSLLTGCATGPSPTGIGLYTDVKGPITATSLPATKTGKACAQTVLGIVNTGDASIDSAKKAGDISLVPSVDYETTGSYPFYGKTCVVVRGQ
>NC_006905:1342474:1370741	putative ABC transporter periplasmic binding protein
MLRREKQKQRIIWDKLMIKGKLALVTCALTLVFTSSLFAASDTADGRTLKLAIGPEPTEGFDPMLGWSHGSYLLLHAPLLKQNADMSWGNLLTEKVDTSPDGKIWTLTLKPGLKFSDGSPLTAEDVVFTYNKAAKSGGKIDMGNFSHARALDARRIEMTLSHPQSTFVNVLGSLGIVPASRYDEKTFAREPIGAGPYRLVSFQPGQQLIVEANPWYAGKKNDFNRLVFVFLDEDNAYAAARSGQLGLVRIAPSMAVAPQQDNLKLWVRDSVENRGIVFPMVPAGKKDANGYPVGNDVTADVAIRRAINYAINRKQLAEQVMEGHAIPAYSAVQGLPWQNPSVIFSDGDIAKARAILEEAGWKINRAGVREKAGKEARLTLWYASGDSTRRDLAEAVRAMLQPLGIVVSLQSGSWETVERHMHANPTLFGWGSLDPMELFHHYSGKAAGVEYYNPGYYSNPAVEAHLKQAIDAPDWQKAIPFWQQVEWDGKQGAGVQGDAAWAWLLNIQHTYLANPCIDLGKGAPEIHGSWSVLNNLDDWTWTWTCR
>NC_006905:1342474:1372378	putative ABC transporter
VMKLFFSHFLRLIILLVLVAAGTFILLSFSPVDPIRAYIGNDLLHVPPEQYARIAARWGLDQPLWERFGHWFWRLLQGDMGYSMLFNMPVANVIRERFATSFALLAGAWLLSGVLGVTLGFLAGRFLYRWPDKMICRISYLLSSLPTFWIAMLLLALFAVRWPVLPVCCAWDPGNNAGTALLSERLRHLVLPVCALSLLGMGQIALHTREKIASVMKSEFIRFARAQGDKGWSLLRHQVLRHAITPALCLQFASLGELMGGALLAEKVFAYPGLGQATIDAGLRGDVPLLMGIVLFCTLLVFAGNTISAWLVVVLNRSLERPDAL
>NC_006905:1342474:1373345	putative ABC transporter
MLYNSAPTLFRLILSVTCLLFIAGYGYATLSQPPEVNLLARHLSPDIQHWFGTDNLGRDVWLRCFQGAFTSLQIGVGAALCSGVIALVMAAVARIHPRLDLLMRLITDAMLAMPHLLLLILICFTLGGGKSGVIAAVALTHWPRLALILRADAERVAQSDYLTLTYRLGHGHLYCWRYHYFPALLPQWLTGTLLMFPHAVLHSAALSFLGFGLAPHEPSLGLLLADALRFISHGNWWLVLFPGLMLFTLVMLFDQFARAIQRLWLRSDVC
>NC_006905:1342474:1374151	putative ATPase component of ABC-type transport system, contain duplicated ATPase domain
MLSLQQVTLESARYRWYGARRWSPLLQNVSFDIAPGEMVALVGGSGEGKSLLLQCLLDLLPENLRFRGEITLDGNRLDRHTIRQLRGNTFSYVPQGVQALNPMLNIRKHLNRACHLTGRAWDETQMVQLLQQSDLAPTVLERFPRQLSGGMAKRILACHASLSQARYILADEITAWLDTALANQLLEHLRGLCERGCGVLWVTHDLLLAARYADRIVALHQGYITDNIRCEQLQPEEMSEPLKRQWQALPELNPLFMPTGEGIEC
>NC_006905:1342474:1374942	putative ATPase component of ABC-type transport system, contain duplicated ATPase domain
MLSCRDLVIRQGGKVLWQNLTFTISAGERVGIHAPSGTGKTTLGRVLAGWQKPTAGDVLLDGSPLPLHQYCPVQLVPQHPELTFNPWRSAGDAVRDAWQPDPETMRRLHVQPEWLTRRSMQLSGGELARISILRALDPRTRFLIADEMTAQLDPSIQKAIWGYVLEVCRSRSLGMLVISHQSALLDQVCTRHLQVE
>NC_006905:1342474:1375614	putative inner membrane protein
MEYLARLNIVAMLMSTTFWINLAVVFFVTLITYWLINWLLNVVYKALQRPDKKDDAHGRLRPIVFEMLKKTSKMLIFFAAFLFSLRFVALPDRLFSTLSHAWFLVVAIQMAIWLDQGVQSWMRHLLYAPGSNKNPVTLVILGMILRVLVWSMMLLSILANVGVDITALVASLGVGGIAIALAVQTVLSDVFASLSIGFDKPFEIGDFVVFNDVAGTIEHIGLKTTRIRSLSGEQIVCANAQLLQQTIHNYKRMQTRRIVFTFGVATATPPEKLRLIGDMVKKIITDVGETQFDRAHLLAFGQDRLTYEVVHIVNTADYNKYMDIQQEINIRIIEKLIENDIELALPSLVVRAPVQVEETRDYSNTADAKNADKRVMQ
>NC_006905:1342474:1376941	putative cytoplasmic protein
MQQEHRECIEQCYECAAACDICASSCLREDNVEMMKHCIQLDMQCAAICRLAAQFMALESEYSQKLCRLCADICKACAEECARHDHDHCQNCARACSQCADACLKMAA
>NC_006905:1342474:1377461	putative periplasmic protein
LVIHLKKLTMLLGMLLVNSPAFAHGHHAHGAPMTEVEQKAAAGVFDDANVRDRALTDWDGMWQSVYPYLVSGELDPVFRQKAKKDPEKTFEDIKAYYRKGYATNVETIGIENGVIEFHRDNNVAFCKYNYAGYKILTYASGKKGVRYLFECKDANSKAPKYVQFSDHIIAPRKSAHFHIFMGNTSQQALLQEMENWPTYYPYQLKANEVVDEMLHH