Pre_GI: BLASTP Hits

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Query: NC_020207:2240115:2253560 Enterococcus faecium NRRL B-2354, complete genome

Start: 2253560, End: 2255287, Length: 1728

Host Lineage: Enterococcus faecium; Enterococcus; Enterococcaceae; Lactobacillales; Firmicutes; Bacteria

General Information: This genera consists of organisms typically found in the intestines of mammals, although through fecal contamination they can appear in sewage, soil, and water. They cause a number of infections that are becoming increasingly a problem due to the number of antibiotic resistance mechanisms these organisms have picked up. Both Enterococcus faecalis and Enterococcus faecium cause similar diseases in humans, and are mainly distinguished by their metabolic capabilities. This opportunistic pathogen causes a range of infections similar to those observed with Enterococcus faecalis, including urinary tract infections, bacteremia (bacteria in the blood), and infective endocarditis (inflammation of the membrane surrounding the heart). Hospital-acquired infections from this organism are on the rise due to the emergence of antiobiotic resistance strains and has led to the rise of vancomycin-resistant Staphylococcus aureus strains due to the horizontal transfer of Enterococcus antibiotic resistance genes. Little is known about the virulence mechanisms in this organism, but the genome does encode an esp gene for the surface adhesin. Vancomycin resistant isolates are more typically Enterococcus faecium than Enterococcus faecalis.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004193:3578710:359200635920063592899894Oceanobacillus iheyensis HTE831, complete genomeglycine betaine ABC transporter glycine betaine-binding protein2e-98359
NC_004193:3578710:359297735929773593837861Oceanobacillus iheyensis HTE831, complete genomeglycine betaine ABC transporter permease2e-82306
NC_006582:1138987:116018511601851161021837Bacillus clausii KSM-K16, complete genomeglycine betaine ABC transporter permease2e-66253
NC_004557:2475030:247973424797342480561828Clostridium tetani E88, complete genomeputative glycine-betaine binding permease protein1e-63244
NC_015676:1361468:1378764137876413806501887Methanosalsum zhilinae DSM 4017 chromosome, complete genomeglycine betaine ABC transporter substrate-binding protein6e-62239
NC_003552:2634828:265639026563902657220831Methanosarcina acetivorans C2A, complete genomeglycine betaine/L-proline ABC transporter, permease2e-61237
NC_006347:3805500:380706738070673807891825Bacteroides fragilis YCH46, complete genomeglycine betaine/L-proline transport system permease9e-59228
NC_004557:2475030:247884124788412479737897Clostridium tetani E88, complete genomeglycine betaine-binding protein6e-56219
NC_009615:4693164:469577346957734696588816Parabacteroides distasonis ATCC 8503 chromosome, complete genomeglycine betaine/L-proline transport system permease2e-55217
NC_009381:1783886:1821090182109018222441155Yersinia pestis Pestoides F chromosome, complete genomeglycine betaine transporter membrane protein2e-55217
NC_014002:466994:4810854810854839222838Methanohalophilus mahii DSM 5219 chromosome, complete genomeSubstrate-binding region of ABC-type glycine betaine transport system8e-54212
NC_010505:2657683:265768326576832658519837Methylobacterium radiotolerans JCM 2831, complete genomeSubstrate-binding region of ABC-type glycine betaine transport system2e-53211
NC_015733:2581324:2584695258469525866471953Pseudomonas putida S16 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component3e-53209
NC_010002:2933909:2935066293506629362651200Delftia acidovorans SPH-1, complete genomebinding-protein-dependent transport systems inner membrane component2e-52207
NC_012721:710887:710887710887711750864Burkholderia glumae BGR1 chromosome 2, complete genomeABC-type proline/glycine betaine transport system, periplasmic components2e-51204
NC_008343:88184:942259422595076852Granulibacter bethesdensis CGDNIH1, complete genomeglycine betaine/L-proline transport system permease protein proW2e-50201
NC_015733:2581324:262021326202132621145933Pseudomonas putida S16 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component1e-50201
NC_010505:2657683:265864226586422659493852Methylobacterium radiotolerans JCM 2831, complete genomebinding-protein-dependent transport systems inner membrane component7e-50199
NC_007952:1587500:158958115895811590483903Burkholderia xenovorans LB400 chromosome 2, complete sequenceABC proline/glycine betaine transporter, inner membrane subunit3e-49196
NC_008687:965152:989964989964990845882Paracoccus denitrificans PD1222 chromosome 2, complete sequencebinding-protein-dependent transport systems inner membrane component6e-49196
NC_009615:4693164:469486046948604695747888Parabacteroides distasonis ATCC 8503 chromosome, complete genomeglycine betaine-binding protein8e-49195
NC_008463:1912348:194455119445511945408858Pseudomonas aeruginosa UCBPP-PA14, complete genomeputative glycine betaine-binding protein precursor2e-48194
NC_014210:5370868:538190553819055382837933Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,Substrate-binding region of ABC-type glycine betaine transport system2e-48193
NC_010334:4925936:492593649259364926835900Shewanella halifaxensis HAW-EB4, complete genomebinding-protein-dependent transport systems inner membrane component6e-48192
NC_016002:2591189:260637826063782607247870Pseudogulbenkiania sp. NH8B, complete genomeABC transporter permease5e-48192
NC_014923:79370:856258562586512888Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completebinding-protein-dependent transport systems inner membrane component2e-47191
NC_019978:2036779:205052220505222051355834Halobacteroides halobius DSM 5150, complete genomeABC-type proline/glycine betaine transport system, permease component3e-47190
NC_015556:1188500:120853012085301209429900Pseudomonas fulva 12-X chromosome, complete genomebinding-protein-dependent transport systems inner membrane component1e-46188
NC_014210:5370868:5382898538289853841271230Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,binding-protein-dependent transport systems inner membrane component1e-46187
NC_014222:1:147021470215538837Methanococcus voltae A3 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component7e-45182
NC_008148:1567703:157662715766271577568942Rubrobacter xylanophilus DSM 9941, complete genomeTwin-arginine translocation pathway signal9e-45181
NC_005071:588541:609012609012609926915Prochlorococcus marinus str. MIT 9313, complete genomeABC transporter,membrane component, glycine betaine/proline family1e-44181
NC_014222:1:136801368014600921Methanococcus voltae A3 chromosome, complete genomeSubstrate-binding region of ABC-type glycine betaine transport system2e-44180
NC_006347:3805500:380619338061933807047855Bacteroides fragilis YCH46, complete genomeglycine betaine-binding protein precursor1e-42174
NC_007492:3180480:3205029320502932071252097Pseudomonas fluorescens PfO-1, complete genomeGlycine betaine/L-proline ABC transporter, ATPase/permease fusion protein, putative2e-42174
NC_006582:1138987:116108111610811162013933Bacillus clausii KSM-K16, complete genomeglycine betaine ABC transporter substrate-binding protein3e-42173
NC_005791:837505:857796857796858683888Methanococcus maripaludis S2, complete genomeputative glycine betaine/L-proline ABC transporter, solute-binding protein3e-41170
NC_008148:1567703:157570915757091576575867Rubrobacter xylanophilus DSM 9941, complete genomebinding-protein-dependent transport systems inner membrane component6e-41169
NC_015847:909938:929949929949930836888Methanococcus maripaludis XI chromosome, complete genomeglycine betaine ABC transporter substrate-binding protein1e-40168
NC_015847:909938:930852930852931685834Methanococcus maripaludis XI chromosome, complete genomebinding-protein dependent transport system inner membrane protein2e-40167
NC_005791:837505:858699858699859532834Methanococcus maripaludis S2, complete genomeABC-type proline/glycine betaine transport system, permease component related protein2e-40167
NC_016002:2591189:260746026074602608344885Pseudogulbenkiania sp. NH8B, complete genomeglycine betaine/L-proline ABC transporter periplasmic substrate-binding protein7e-39162
NC_005071:588541:609923609923610831909Prochlorococcus marinus str. MIT 9313, complete genomeABC transporter substrate binding protein, glycine betaine/proline family1e-36154
NC_019978:2036779:205144020514402052387948Halobacteroides halobius DSM 5150, complete genomeABC-type proline/glycine betaine transport system, periplasmic component2e-35150
NC_002678:6061448:6061448606144860634271980Mesorhizobium loti MAFF303099, complete genomeABC transporter permease protein3e-34147
NC_012590:637651:665140665140666039900Corynebacterium aurimucosum ATCC 700975, complete genomeglycine betaine-binding periplasmic protein8e-34145
NC_015379:4426827:444064944406494441497849Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Glycine betaine ABC transporter, permease component1e-32141
NC_003305:1035342:105860510586051059453849Agrobacterium tumefaciens str. C58 chromosome linear, completeABC transporter, membrane spanning protein2e-32141
NC_016625:171341:185846185846186688843Burkholderia sp. YI23 chromosome 2, complete sequenceABC transporter permease1e-31138
NC_003305:1035342:105775710577571058608852Agrobacterium tumefaciens str. C58 chromosome linear, completeABC transporter, membrane spanning protein2e-31137
NC_008343:88184:9318993189942051017Granulibacter bethesdensis CGDNIH1, complete genomeglycine betaine/L-proline transport system binding protein proX6e-30132
NC_016625:171341:183789183789184640852Burkholderia sp. YI23 chromosome 2, complete sequenceputative substrate-binding component of ABC transporter9e-30132
NC_015379:4426827:444269444426944443542849Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Glycine betaine ABC transporter, periplasmic component1e-29132
NC_015556:130437:155804155804156733930Pseudomonas fulva 12-X chromosome, complete genomecholine ABC transporter, periplasmic binding protein6e-29129
NC_015379:4426827:443980444398044440652849Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Glycine betaine ABC transporter, permease component9e-28125
NC_016625:171341:186685186685187530846Burkholderia sp. YI23 chromosome 2, complete sequencehypothetical protein1e-27125
NC_014532:988351:995188995188996132945Halomonas elongata DSM 2581, complete genomeABC-type transport system periplasmic substrate-binding protein1e-24115
NC_018643:857911:8579118579118600642154Alpha proteobacterium HIMB5 chromosome, complete genomeBinding-protein-dependent transport system inner membrane component4e-24113
NC_012660:5121219:512902951290295129964936Pseudomonas fluorescens SBW25 chromosome, complete genomeputative glycine betaine/L-proline-binding protein ABC transporter component3e-23110
NC_015672:788417:815759815759816721963Flexistipes sinusarabici DSM 4947 chromosome, complete genomeglycine betaine ABC transporter periplasmic subunit2e-20101
NC_007952:1587500:159159315915931592528936Burkholderia xenovorans LB400 chromosome 2, complete sequenceABC proline/glycine betaine transporter, periplasmic ligand binding protein1e-1998.6
NC_016605:50695:6941669416709451530Pediococcus claussenii ATCC BAA-344 chromosome, complete genomesubstrate binding domain of ABC-type glycine betaine transport system family protein2e-1998.2
NC_016023:1143130:1143130114313011446591530Bacillus coagulans 36D1 chromosome, complete genomeglycine betaine ABC transporter periplasmic protein1e-1895.1
NC_010552:2131021:213204921320492133002954Burkholderia ambifaria MC40-6 chromosome 2, complete sequencecholine ABC transporter, periplasmic binding protein7e-1892.8
NC_011999:1567818:158318915831891583833645Macrococcus caseolyticus JCSC5402, complete genomeglycine betaine/carnitine/choline ABC transporter, permease protein2e-1790.9
NC_010623:188143:212955212955213905951Burkholderia phymatum STM815 chromosome 2, complete sequencecholine ABC transporter, periplasmic binding protein3e-1790.5
NC_008525:270310:2858552858552873841530Pediococcus pentosaceus ATCC 25745, complete genomeABC-type proline/glycine betaine transport system, permease and substrate binding protein4e-1687
NC_009484:775828:775828775828776757930Acidiphilium cryptum JF-5 chromosome, complete genomeglycine betaine ABC transporter substrate-binding protein2e-1584.7
NC_013520:1905554:1927618192761819291501533Veillonella parvula DSM 2008, complete genomeSubstrate-binding region of ABC-type glycine betaine transport system2e-1584.3
NC_015425:2528549:2560000256000025615861587Clostridium botulinum BKT015925 chromosome, complete genomeputative glycine betaine/carnitine/choline ABC transporter3e-1584
NC_013411:1168049:118585111858511186480630Geobacillus sp. Y412MC61, complete genomebinding-protein-dependent transport systems inner membrane component9e-1582.4
NC_014915:308056:325858325858326487630Geobacillus sp. Y412MC52 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component9e-1582.4
NC_009328:293000:312108312108312737630Geobacillus thermodenitrificans NG80-2 chromosome, complete genomeglycine betaine/L-proline ABC transporter permease1e-1482
NC_009495:1759759:1776428177642817780141587Clostridium botulinum A str. ATCC 3502 chromosome, complete genomeglycine betaine/L-proline ABC transporter permease/substrate-binding protein1e-1481.6
NC_016593:353505:379641379641380270630Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completebinding-protein-dependent transport system inner membrane component3e-1480.5
NC_006510:310212:341910341910342539630Geobacillus kaustophilus HTA426, complete genomehypothetical protein3e-1480.5
NC_014206:345499:376734376734377363630Geobacillus sp. C56-T3 chromosome, complete genomebinding-protein-dependent transporters inner membrane component4e-1480.1
NC_014377:210888:220474220474221115642Thermosediminibacter oceani DSM 16646 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component7e-1479.3
NC_014479:3245126:326511132651113265764654Bacillus subtilis subsp. spizizenii str. W23 chromosome, completecholine ABC transporter permease1e-1378.6
NC_013406:5066769:510821851082185108883666Paenibacillus sp. Y412MC10 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component2e-1378.2
NC_009727:1899876:1899876189987619014561581Coxiella burnetii Dugway 7E9-12, complete genomeABC transporter, quaternary amine uptake transporter (QAT) family, permease/periplasmic amine-binding protein2e-1377.8
NC_016047:3406488:342286934228693423522654Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completecholine transport system permease opuBB2e-1377.8
NC_018515:4196409:422021942202194220863645Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeproline/glycine betaine ABC transporter permease9e-1375.5
NC_014315:2711852:2731698273169827332031506Nitrosococcus watsoni C-113 chromosome, complete genomeglycine betaine ABC transporter substrate-binding protein3e-1273.9
NC_013406:5066769:510984751098475110548702Paenibacillus sp. Y412MC10 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component4e-1273.6
NC_021175:881845:8818458818458833651521Streptococcus oligofermentans AS 1.3089, complete genomecholine ABC transporter permease4e-1273.6
NC_010718:128423:141500141500142150651Natranaerobius thermophilus JW/NM-WN-LF, complete genomebinding-protein-dependent transport systems inner membrane component5e-1273.2
NC_014614:6115:392333923339889657Clostridium sticklandii, complete genomeGlycine betaine transport system permease protein / Glycine betaine-binding protein (fragment)7e-1272.8
NC_015589:3241364:324228832422883242905618Desulfotomaculum ruminis DSM 2154 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component7e-1272.8
NC_010718:128423:143328143328144173846Natranaerobius thermophilus JW/NM-WN-LF, complete genomebinding-protein-dependent transport systems inner membrane component2e-1171.2
NC_007576:1854136:1854136185413618556621527Lactobacillus sakei subsp. sakei 23K, complete genomePutative glycine/betaine/carnitine/choline ABC transporter, substrate binding and membrane-spanning subunits3e-1067.4
NC_004461:205068:213697213697214332636Staphylococcus epidermidis ATCC 12228, complete genomeopuCB protein5e-1066.6
NC_012883:1695703:169570316957031696320618Thermococcus sibiricus MM 739, complete genomeOsmoprotection protein (proW-1)8e-1065.9
NC_009512:1025365:102536510253651026078714Pseudomonas putida F1, complete genomebinding-protein-dependent transport systems inner membrane component9e-1065.9
NC_007963:2644930:264611626461162646847732Chromohalobacter salexigens DSM 3043, complete genomebinding-protein-dependent transport systems inner membrane component1e-0965.5
NC_009485:7827782:7836417783641778381741758Bradyrhizobium sp. BTAi1 chromosome, complete genomeABC transporter permease3e-0964.3
NC_008148:583030:608239608239608946708Rubrobacter xylanophilus DSM 9941, complete genomebinding-protein-dependent transport systems inner membrane component3e-0963.9
NC_009778:1070000:107206410720641072795732Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein4e-0963.5
NC_012526:4462:2070020700218811182Deinococcus deserti VCD115, complete genomeputative proline/glycine betaine4e-0963.5
NC_020260:1111130:111415211141521114883732Cronobacter sakazakii Sp291, complete genomeosmoprotectant uptake system permease YehW5e-0963.2
NC_014209:1580423:159879915987991599437639Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,binding-protein-dependent transport systems inner membrane component5e-0963.2
NC_020260:1111130:1112092111209211132251134Cronobacter sakazakii Sp291, complete genomeosmoprotectant uptake system permease YehY1e-0862
NC_016047:3406488:342124934212493421920672Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completecholine transport system permease opuBD1e-0861.6
NC_009778:1070000:1070004107000410711371134Enterobacter sakazakii ATCC BAA-894, complete genomehypothetical protein2e-0861.2
NC_012883:1695703:169630716963071696936630Thermococcus sibiricus MM 739, complete genomeOsmoprotection protein (proW-2)4e-0860.5
NC_004461:205068:215313215313215960648Staphylococcus epidermidis ATCC 12228, complete genomeopuCD protein4e-0860.1
NC_015278:538500:5586705586705602111542Aerococcus urinae ACS-120-V-Col10a chromosome, complete genometoxin-antitoxin system toxin component, PIN family7e-0859.7
NC_014479:3245126:326349132634913264162672Bacillus subtilis subsp. spizizenii str. W23 chromosome, completecholine ABC transporter permease8e-0859.3
NC_009792:2688747:271069327106932711316624Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein8e-0859.3
NC_016047:3406488:342553434255343426202669Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeglycine betaine/carnitine/choline transport system permease OpuCD9e-0859.3
NC_014479:3245126:326906732690673269741675Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeglycine betaine/carnitine/choline/choline sulfate ABC transporter permease1e-0758.9
NC_014121:2247913:226354522635452264255711Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative osmoprotectant transport system permease protein1e-0758.5
NC_011999:1567818:158473315847331585425693Macrococcus caseolyticus JCSC5402, complete genomeglycine betaine/carnitine/choline ABC transporter, permease protein1e-0758.5
NC_015589:3241364:324292832429283243569642Desulfotomaculum ruminis DSM 2154 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component3e-0757
NC_014643:1251847:126919912691991269891693Rothia dentocariosa ATCC 17931 chromosome, complete genomeglycine ABC transporter permease5e-0756.6
NC_016626:400080:401837401837402541705Burkholderia sp. YI23 plasmid byi_1p, complete sequencebinding-protein-dependent transport system inner membrane protein6e-0756.6
NC_016816:3917446:3923316392331639250521737Pantoea ananatis LMG 5342, complete genomenitrate/sulfonate/bicarbonate ABC transporter inner membrane permease protein6e-0756.2
NC_013956:663295:6753926753926771281737Pantoea ananatis LMG 20103 chromosome, complete genomeProW7e-0756.2
NC_016830:2642881:2665349266534926670971749Pseudomonas fluorescens F113 chromosome, complete genomeanion ABC transporter permease1e-0655.5
NC_015379:4249238:4249238424923842508781641Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative ABC transporter, permease component1e-0655.5
NC_009925:647752:652404652404653033630Acaryochloris marina MBIC11017, complete genomebinding-protein-dependent inner membrane transport system, putative2e-0654.7
NC_011832:1399446:139883913988391399453615Candidatus Methanosphaerula palustris E1-9c, complete genomebinding-protein-dependent transport systems inner membrane component2e-0654.7
NC_018607:921923:955291955291956016726Brachyspira pilosicoli B2904 chromosome, complete genomeABC transporter permease2e-0654.7
NC_018515:4196409:422204142220414222697657Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeproline/glycine betaine ABC transporter permease2e-0654.7
NC_014330:505412:509012509012509737726Brachyspira pilosicoli 95/1000 chromosome, complete genomebinding-protein-dependent transport systems inner membrane component4e-0653.9
NC_019908:121178:155028155028155753726Brachyspira pilosicoli P43/6/78 chromosome, complete genomebinding-protein-dependent transport system inner membrane protein4e-0653.5
NC_018604:1943561:194284619428461943571726Brachyspira pilosicoli WesB complete genomebinding-protein-dependent transport systems inner membrane component4e-0653.5
NC_011837:1056888:105993710599371060764828Clostridium kluyveri NBRC 12016, complete genomehypothetical protein5e-0653.5
NC_011837:1056888:1062828106282810638981071Clostridium kluyveri NBRC 12016, complete genomehypothetical protein5e-0653.1