Pre_GI: BLASTN Hits

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Query: NC_020134:2772500 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

Start: 2772500, End: 2792546, Length: 20047

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_013205:2610956*2610956266117350218Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,4e-0867.9BLASTN svgBLASTP svg
NC_009922:2721343*2721343276393542593Alkaliphilus oremlandii OhILAs, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009725:28596302859630290030340674Bacillus amyloliquefaciens FZB42, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_011772:48758934875893491196236070Bacillus cereus G9842, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_006270:40140004014000403670422705Bacillus licheniformis ATCC 14580, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_010184:4763932*4763932478614422213Bacillus weihenstephanensis KBAB4, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_014652:10916101091610111461223003Caldicellulosiruptor hydrothermalis 108 chromosome, complete2e-0971.9BLASTN svgBLASTP svg
NC_010674:29302592930259294957619318Clostridium botulinum B str. Eklund 17B, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_010723:27351962735196275388618691Clostridium botulinum E3 str. Alaska E43, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_014376:3732547*3732547377846945923Clostridium saccharolyticum WM1 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_020291:684500*68450070271718218Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome2e-0661.9BLASTN svgBLASTP svg
NC_009012:2661795*2661795268590824114Clostridium thermocellum ATCC 27405, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_014828:2657623*2657623268107823456Ethanoligenens harbinense YUAN-3 chromosome, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_008576:41300004130000415190421905Magnetococcus sp. MC-1, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_015690:752237522310369828476Paenibacillus mucilaginosus KNP414 chromosome, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_019960:1658657*1658657174985291196Prevotella dentalis DSM 3688 chromosome 1, complete sequence2e-0765.9BLASTN svgBLASTP svg
NC_015519:924000*92400094202318024Tepidanaerobacter sp. Re1 chromosome, complete genome7e-19103BLASTN svgBLASTP svg
NC_014410:51711*517119003438324Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,2e-1075.8BLASTN svgBLASTP svg
NC_019970:35985359857648740503Thermoanaerobacterium thermosaccharolyticum M0795, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_014377:15461241546124157234626223Thermosediminibacter oceani DSM 16646 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_000853:771746*77174679860126856Thermotoga maritima MSB8, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_013642:545464*54546457230426841Thermotoga naphthophila RKU-10, complete genome3e-1281.8BLASTN svgBLASTP svg