Some Help

Query: NC_020134:2193900 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

Start: 2193900, End: 2214452, Length: 20553

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009012:1595498*1595498161817522678Clostridium thermocellum ATCC 27405, complete genome8e-62246BLASTN svgBLASTP svg
NC_003869:94800094800097076722768Thermoanaerobacter tengcongensis MB4, complete genome8e-25123BLASTN svgBLASTP svg
NC_014721:1629063*1629063165209923037Caldicellulosiruptor kristjanssonii 177R1B chromosome, complete4e-1797.6BLASTN svgBLASTP svg
NC_006347:2899653*2899653292225722605Bacteroides fragilis YCH46, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_003228:2973266*2973266299679923534Bacteroides fragilis NCTC 9343, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_014393:4541000*4541000456644025441Clostridium cellulovorans 743B chromosome, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_021182:2192718*2192718221646323746Clostridium pasteurianum BC1, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_013216:3408608*3408608343378525178Desulfotomaculum acetoxidans DSM 771, complete genome6e-1073.8BLASTN svgBLASTP svg
NC_015311:2689118*2689118271409924982Prevotella denticola F0289 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_015581:10433941043394108183738444Thioalkalimicrobium cyclicum ALM1 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015682:736746*73674676603529290Thermodesulfobacterium sp. OPB45 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_007644:626992*62699269973472743Moorella thermoacetica ATCC 39073, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013525:18717951871795190023728443Thermobaculum terrenum ATCC BAA-798 chromosome 1, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_009881:23650023650025585219353Rickettsia akari str. Hartford, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_014328:4471995*4471995450215530161Clostridium ljungdahlii ATCC 49587 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_012781:4065*40652459920535Eubacterium rectale ATCC 33656, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_000963:20554620554622772522180Rickettsia prowazekii str. Madrid E, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_014364:2246524*2246524228373637213Spirochaeta smaragdinae DSM 11293 chromosome, complete genome1e-0560BLASTN svgBLASTP svg
NC_014253:312354*31235434601333660Methanohalobium evestigatum Z-7303 chromosome, complete genome1e-0560BLASTN svgBLASTP svg