Pre_GI: BLASTP Hits

Some Help

Query: NC_020134:2948000:2971696 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

Start: 2971696, End: 2972334, Length: 639

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016627:4871875:489516048951604895780621Clostridium clariflavum DSM 19732 chromosome, complete genomeputative RNA-binding protein3e-59228
NC_011898:4044500:406594340659434066575633Clostridium cellulolyticum H10, complete genomesingle-stranded nucleic acid binding R3H domain protein1e-52206
NC_004557:32094:544915449155138648Clostridium tetani E88, complete genomeconserved protein, JAG-family3e-52204
NC_014392:2513529:252522525252252525851627Caldicellulosiruptor obsidiansis OB47 chromosome, complete genomesingle-stranded nucleic acid binding R3H domain-containing protein2e-45182
NC_014220:2398334:240331324033132403942630Syntrophothermus lipocalidus DSM 12680 chromosome, complete genomesingle-stranded nucleic acid binding R3H domain protein2e-45181
NC_008593:2527064:190319032532630Clostridium novyi NT, complete genomeR3H domain protein2e-44178
NC_015519:2739347:275768227576822758296615Tepidanaerobacter sp. Re1 chromosome, complete genomesingle-stranded nucleic acid binding R3H domain-containing protein2e-43175
NC_016935:8716704:873628387362838736903621Paenibacillus mucilaginosus 3016 chromosome, complete genomesingle-stranded nucleic acid binding R3H domain-containing protein3e-38158
NC_006177:3549467:356356735635673564184618Symbiobacterium thermophilum IAM 14863, complete genomeSpoIIIJ-associated RNA-binding protein2e-37155
NC_015690:8645500:866105486610548661674621Paenibacillus mucilaginosus KNP414 chromosome, complete genomesingle-stranded nucleic acid binding R3H domain-containing protein2e-37155
NC_013406:7092510:711237371123737113161789Paenibacillus sp. Y412MC10 chromosome, complete genomesingle-stranded nucleic acid-binding R3H domain-containing protein8e-32136
NC_017243:314000:334078334078334782705Brachyspira intermedia PWS/A chromosome, complete genomejag protein1e-31136
NC_014833:3667748:368109336810933681908816Ruminococcus albus 7 chromosome, complete genomesingle-stranded nucleic acid-binding R3H domain-containing protein1e-29129
NC_013522:736339:738824738824739519696Thermanaerovibrio acidaminovorans DSM 6589, complete genomesingle-stranded nucleic acid binding R3H domain protein2e-29128
NC_009616:1604276:162034616203461621017672Thermosipho melanesiensis BI429 chromosome, complete genomesingle-stranded nucleic acid binding R3H domain-containing protein2e-22105
NC_015564:4727630:473582747358274736336510Amycolicicoccus subflavus DQS3-9A1 chromosome, complete genomehypothetical protein6e-21100
NC_016938:1830500:184343018434301844194765Melissococcus plutonius DAT561 chromosome 1, complete genomeRNA-binding protein Jag5e-21100
NC_015389:2101841:211332221133222113900579Coriobacterium glomerans PW2 chromosome, complete genomesingle-stranded nucleic acid binding R3H domain-containing protein2e-2098.6
NC_015436:1:690469047611708Spirochaeta coccoides DSM 17374 chromosome, complete genomesingle-stranded nucleic acid binding R3H domain-containing protein4e-2097.8
NC_016114:3655005:368074236807423681251510Streptomyces flavogriseus ATCC 33331 chromosome, complete genomesingle-stranded nucleic acid binding R3H domain-containing protein1e-1996.7
NC_015953:3684065:369557636955763696085510Streptomyces sp. SirexAA-E chromosome, complete genomesingle-stranded nucleic acid binding R3H domain-containing protein3e-1995.1
NC_013204:3613824:362942936294293629950522Eggerthella lenta DSM 2243, complete genomesingle-stranded nucleic acid binding R3H domain protein3e-1994.7
NC_007333:3626510:363905136390513639590540Thermobifida fusca YX, complete genomesingle-stranded nucleic acid binding R3H8e-1993.6
NC_014210:5752651:576485457648545765342489Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,single-stranded nucleic acid binding R3H domain protein1e-1893.2
NC_003888:4251867:427534342753434275855513Streptomyces coelicolor A3(2), complete genomehypothetical protein2e-1892
NC_008578:2431074:244059024405902441189600Acidothermus cellulolyticus 11B, complete genomesingle-stranded nucleic acid binding R3H domain protein4e-1891.7
NC_014151:4106624:412013541201354120647513Cellulomonas flavigena DSM 20109 chromosome, complete genomesingle-stranded nucleic acid binding R3H domain protein9e-1890.1
NC_015387:1002955:101999210199921020588597Marinithermus hydrothermalis DSM 14884 chromosome, complete genomesingle-stranded nucleic acid binding R3H domain-containing protein1e-1789.7
NC_017093:8757291:877055787705578771126570Actinoplanes missouriensis 431, complete genomehypothetical protein3e-1788.6
NC_018750:3964784:397616339761633976675513Streptomyces venezuelae ATCC 10712, complete genomeRNA-binding protein Jag8e-1787
NC_014550:3839389:385665538566553857182528Arthrobacter arilaitensis Re117, complete genomeR3H domain-containing protein1e-1686.7
NC_014363:2035141:205038020503802050970591Olsenella uli DSM 7084 chromosome, complete genomesingle-stranded nucleic acid binding R3H domain protein2e-1685.9
NC_015760:2009425:2024004202400420250471044Streptococcus salivarius CCHSS3, complete genomehypothetical protein4e-1684.7
NC_006449:1606948:1619801161980116208501050Streptococcus thermophilus CNRZ1066, complete genomeconserved hypothetical protein, Jag protein4e-1684.7
NC_006448:1604627:1617490161749016185391050Streptococcus thermophilus LMG 18311, complete genomeconserved hypothetical protein, Jag protein4e-1684.7
NC_013929:5135285:514436951443695144881513Streptomyces scabiei 87.22 chromosome, complete genomenucleic-acid-binding protein Jag9e-1683.6
NC_013521:4240468:425046442504644250988525Sanguibacter keddieii DSM 10542, complete genomepredicted RNA-binding protein1e-1583.2
NC_015125:1597600:160667916066791607182504Microbacterium testaceum StLB037, complete genomepredicted RNA-binding protein8e-1580.5
NC_013192:2434664:246326224632622464083822Leptotrichia buccalis DSM 1135, complete genomesingle-stranded nucleic acid binding R3H domain protein1e-1480.1
NC_016511:2482500:249570424957042496315612Propionibacterium acnes TypeIA2 P.acn31 chromosome, completeR3H domain-containing protein1e-1479.7
NC_014656:1634397:164405016440501644583534Bifidobacterium longum subsp. longum BBMN68 chromosome, completejag1e-1479.7
NC_006085:2544421:255734725573472557958612Propionibacterium acnes KPA171202, complete genomeJAG-like protein1e-1479.7
NC_014039:2479500:249241224924122493023612Propionibacterium acnes SK137 chromosome, complete genomeR3H domain protein1e-1479.7
NC_016512:2506898:251982425198242520435612Propionibacterium acnes TypeIA2 P.acn17 chromosome, completeR3H domain-containing protein2e-1479.3
NC_016516:2473500:248656124865612487172612Propionibacterium acnes TypeIA2 P.acn33 chromosome, completeR3H domain-containing protein2e-1479.3
NC_017221:2268276:227565722756572276190534Bifidobacterium longum subsp. longum KACC 91563 chromosome,hypothetical protein2e-1479
NC_004307:1620500:162805216280521628585534Bifidobacterium longum NCC2705, complete genomenarrowly conserved hypothetical protein with possible ssDNA binding domain2e-1479
NC_015052:2383865:239749323974932398026534Bifidobacterium longum subsp. infantis 157F, complete genomehypothetical protein2e-1479
NC_015067:2371428:238234523823452382878534Bifidobacterium longum subsp. longum JCM 1217, complete genomehypothetical protein2e-1479
NC_013595:10329633:103387611033876110339264504Streptosporangium roseum DSM 43021, complete genomespoIIIJ-associated protein2e-1479
NC_014169:2466442:247522824752282475761534Bifidobacterium longum subsp. longum JDM301 chromosome, completesingle-stranded nucleic acid-binding R3H domain-containing protein2e-1479
NC_017218:2313245:232474623247462325282537Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomeR3H domain-containing protein3e-1478.6
NC_011593:2819230:283013828301382830671534Bifidobacterium longum subsp. infantis ATCC 15697 chromosome,single-stranded nucleic acid binding R3H domain-containing protein3e-1478.6
NC_017219:2815225:282613928261392826672534Bifidobacterium longum subsp. infantis ATCC 15697, complete genomehypothetical protein3e-1478.6
NC_013165:3146000:316135731613573161923567Slackia heliotrinireducens DSM 20476, complete genomepredicted RNA-binding protein3e-1478.6
NC_010816:1660066:166971816697181670251534Bifidobacterium longum DJO10A, complete genomeHypothetical RNA-binding protein4e-1478.2
NC_011896:3252925:326485032648503265431582Mycobacterium leprae Br4923, complete genomehypothetical protein6e-1477.4
NC_002677:3253057:326498232649823265563582Mycobacterium leprae TN, complete genomehypothetical protein6e-1477.4
NC_014221:398636:417296417296417877582Truepera radiovictrix DSM 17093 chromosome, complete genomesingle-stranded nucleic acid binding R3H domain protein5e-1374.3
NC_018720:2138180:216415321641532164794642Bifidobacterium asteroides PRL2011 chromosome, complete genomer3H domain-containing protein1e-1273.6
NC_014638:2199799:221184722118472212377531Bifidobacterium bifidum PRL2010 chromosome, complete genomehypothetical protein1e-1273.2
NC_014616:2172025:218407221840722184602531Bifidobacterium bifidum S17 chromosome, complete genomer3H domain-containing protein2e-1272
NC_008541:4679022:469595046959504696516567Arthrobacter sp. FB24 chromosome 1, complete sequencesingle-stranded nucleic acid binding R3H domain protein2e-1169.3
NC_011886:4376261:439271143927114393277567Arthrobacter chlorophenolicus A6, complete genomesingle-stranded nucleic acid binding R3H domain protein5e-1167.8
NC_015145:4232283:424780242478024248368567Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomeRNA-binding protein7e-1167.4
NC_018531:4718904:473356947335694734120552Arthrobacter sp. Rue61a chromosome, complete genomejag-like protein1e-1066.2
NC_014830:4012999:402108740210874021773687Intrasporangium calvum DSM 43043 chromosome, complete genomesingle-stranded nucleic acid binding R3H domain-containing protein1e-1066.2
NC_008711:4579997:459466045946604595211552Arthrobacter aurescens TC1, complete genomeputative jag-like protein2e-1066.2
NC_013161:4209554:422552742255274226015489Cyanothece sp. PCC 8802, complete genomesingle-stranded nucleic acid binding R3H domain protein3e-0858.5