Pre_GI: BLASTP Hits

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Query: NC_020134:1783000:1791244 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

Start: 1791244, End: 1793589, Length: 2346

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015518:1569936:1579373157937315808301458Acidianus hospitalis W1 chromosome, complete genomeCRISPR-associated helicase Cas38e-1583.2
NC_019942:1370872:1377646137764613798472202Aciduliprofundum sp. MAR08-339, complete genomeDEAD/DEAH box helicase8e-22106
NC_000854:770000:7787457787457804571713Aeropyrum pernix K1, complete genomeCRISPR-associated helicase Cas31e-1689
NC_008340:1075500:1085465108546510880802616Alkalilimnicola ehrlichei MLHE-1, complete genomeCRISPR-associated helicase Cas33e-1377.8
NC_013851:759500:7688657688657714982634Allochromatium vinosum DSM 180 chromosome, complete genomeCRISPR-associated helicase Cas31e-1792.4
NC_017186:6395435:6449931644993164522102280Amycolatopsis mediterranei S699 chromosome, complete genomeCRISPR-associated helicase Cas35e-1170.5
NC_014318:6395392:6449887644988764521662280Amycolatopsis mediterranei U32 chromosome, complete genomeCRISPR-associated helicase Cas35e-1170.5
NC_014960:1380500:1389942138994213931483207Anaerolinea thermophila UNI-1, complete genomehypothetical protein3e-1067.8
NC_000918:246792:2467922467922489812190Aquifex aeolicus VF5, complete genomehypothetical protein2e-77290
NC_000917:1666836:1685466168546616871061641Archaeoglobus fulgidus DSM 4304, complete genomehypothetical protein4e-1170.5
NC_000917:40111:6883068830711092280Archaeoglobus fulgidus DSM 4304, complete genomeATP-dependent RNA helicase, putative7e-1790.1
NC_021150:1677811:1699786169978617024912706Azotobacter vinelandii CA6, complete genomeCRISPR-associated helicase Cas3, core4e-22107
NC_012560:1677798:1699773169977317024782706Azotobacter vinelandii DJ, complete genomeCRISPR-associated helicase Cas3, core4e-22107
NC_015634:2492771:2505441250544125079872547Bacillus coagulans 2-6 chromosome, complete genomeCRISPR-associated endonuclease Cas6e-0860.1
NC_014098:2735500:2740062274006227426232562Bacillus tusciae DSM 2912 chromosome, complete genomeCRISPR-associated helicase Cas39e-0859.7
NC_017218:1655009:1666981166698116694192439Bifidobacterium breve ACS-071-V-Sch8b chromosome, complete genomeCRISPR-associated helicase Cas32e-0758.5
NC_014150:1423758:1423758142375814260522295Brachyspira murdochii DSM 12563 chromosome, complete genomeCRISPR-associated helicase Cas37e-116418
NC_017096:260333:2653822653822676282247Caldisericum exile AZM16c01, complete genomeputative CRISPR-associated protein2e-99363
NC_009954:1595743:1607846160784616095941749Caldivirga maquilingensis IC-167, complete genomeCRISPR-associated helicase Cas31e-0759.3
NC_009715:873280:8808488808488830222175Campylobacter curvus 525.92 chromosome, complete genomeDEAD/DEAH box helicase domain-containing protein2e-1378.2
NC_010424:1356000:1362881136288113652682388Candidatus Desulforudis audaxviator MP104C, complete genomeCRISPR-associated helicase Cas31e-33145
NC_014355:1461355:1466467146646714691962730Candidatus Nitrospira defluvii, complete genomeCRISPR-associated helicase Cas33e-1067.8
NC_010995:2798000:2807956280795628104092454Cellvibrio japonicus Ueda107, complete genomeCRISPR-associated helicase Cas3 domain protein4e-0757.4
NC_010803:483713:4952324952324974842253Chlorobium limicola DSM 245, complete genomeCRISPR-associated helicase Cas34e-29130
NC_009337:1448607:1453899145389914558961998Chlorobium phaeovibrioides DSM 265 chromosome, complete genomeCRISPR-associated helicase Cas3 family protein3e-0757.8
NC_002932:1851070:1868933186893318715182586Chlorobium tepidum TLS, complete genomehypothetical protein8e-2099.8
NC_015737:2146953:2151963215196321547312769Clostridium sp. SY8519, complete genomeputative helicase2e-1171.6
NC_020134:2067476:2074883207488320770962214Clostridium stercorarium subsp. stercorarium DSM 8532, completeCRISPR-associated helicase Cas36e-136485
NC_016782:2235000:2245769224576922483992631Corynebacterium diphtheriae 241 chromosome, complete genomeCRISPR-associated protein4e-23110
NC_016786:2235731:2246368224636822489982631Corynebacterium diphtheriae HC01 chromosome, complete genomeCRISPR-associated protein4e-23110
NC_002935:2292835:2302097230209723047272631Corynebacterium diphtheriae NCTC 13129, complete genomePutative helicase2e-23111
NC_007356:1165760:1208782120878212114752694Dehalococcoides sp. CBDB1, complete genomeputative CRISPR-associated helicase Cas38e-1376.3
NC_013890:1175931:1184632118463211873102679Dehalococcoides sp. GT chromosome, complete genomeCRISPR-associated helicase Cas31e-1275.9
NC_015388:89000:99529995291013341806Desulfobacca acetoxidans DSM 11109 chromosome, complete genomeCRISPR-associated helicase Cas33e-1894.4
NC_012108:616088:6267306267306289912262Desulfobacterium autotrophicum HRM2, complete genomeputative CRISPR-associated helicase Cas3 (ATP-dependent DNA helicase)1e-1172.8
NC_013216:921377:9279929279929302262235Desulfotomaculum acetoxidans DSM 771, complete genomeCRISPR-associated helicase Cas39e-106385
NC_021184:823000:8283508283508306982349Desulfotomaculum gibsoniae DSM 7213, complete genomeCRISPR-associated helicase Cas3/CRISPR-associated endonuclease Cas3-HD6e-0757
NC_015573:2975000:2983739298373929862492511Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeCRISPR-associated helicase Cas31e-1895.9
NC_014961:969500:9790069790069807781773Desulfurococcus mucosus DSM 2162 chromosome, complete genomeCRISPR-associated helicase Cas33e-0860.8
NC_012912:1053618:1059035105903510616502616Dickeya zeae Ech1591, complete genomeCRISPR-associated helicase Cas31e-20102
NC_013204:2305140:2318079231807923202772199Eggerthella lenta DSM 2243, complete genomemetal dependent phosphohydrolase5e-1067
NC_010468:1029471:1036180103618010388462667Escherichia coli ATCC 8739, complete genomeCRISPR-associated helicase Cas33e-1687.4
NC_012759:2757826:2768387276838727710532667Escherichia coli BW2952 chromosome, complete genomehypothetical protein9e-1789.4
NC_009800:2889928:2901786290178629044522667Escherichia coli HS, complete genomeCRISPR-associated helicase Cas37e-1893.2
NC_000913:2873443:2882575288257528852412667Escherichia coli K12, complete genomeconserved protein, member of DEAD box family9e-1789.4
NC_010473:2963951:2975117297511729777832667Escherichia coli str. K-12 substr. DH10B, complete genomeconserved protein, member of DEAD box family9e-1789.4
AC_000091:2872000:2883209288320928858752667Escherichia coli W3110 DNA, complete genomeconserved hypothetical protein, member of DEAD box family9e-1789.4
NC_014624:140000:1452031452031477882586Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein7e-1066.6
NC_013849:1595924:1614550161455016161781629Ferroglobus placidus DSM 10642 chromosome, complete genomeCRISPR-associated helicase Cas33e-1481.3
NC_009921:1668306:1682199168219916846342436Frankia sp. EAN1pec, complete genomeCRISPR-associated helicase Cas34e-21103
NC_014206:1467000:1474954147495414771312178Geobacillus sp. C56-T3 chromosome, complete genomeCRISPR-associated helicase Cas32e-101370
NC_015660:3467579:3467579346757934700622484Geobacillus thermoglucosidasius C56-YS93 chromosome, completeCRISPR-associated HD domain-containing protein3e-0654.7
NC_002939:1505701:1512324151232415149752652Geobacter sulfurreducens PCA, complete genomeCRISPR-associated helicase Cas39e-1996.3
NC_019978:922978:9399719399719423132343Halobacteroides halobius DSM 5150, complete genomeCRISPR-associated helicase Cas38e-1996.3
NC_009973:77518:9643396433988472415Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU01, completeCRISPR-associated helicase Cas31e-30135
NC_017161:1117741:1126688112668811289942307Hydrogenobacter thermophilus TK-6 chromosome, complete genomeCRISPR-associated helicase Cas31e-0965.5
NC_013799:1117750:1126830112683011291362307Hydrogenobacter thermophilus TK-6, complete genomeCRISPR-associated helicase1e-0965.5
NC_015557:583475:5965515965515988422292Hydrogenobaculum sp. 3684 chromosome, complete genomeCRISPR-associated helicase Cas31e-68261
NC_020411:583503:5965795965795988702292Hydrogenobaculum sp. HO, complete genomeCRISPR-associated helicase Cas31e-68261
NC_015587:583530:5966065966065988972292Hydrogenobaculum sp. SHO chromosome, complete genomeCRISPR-associated helicase Cas31e-68261
NC_013850:985331:9897249897249924172694Klebsiella variicola At-22 chromosome, complete genomeCRISPR-associated helicase Cas31e-1585.9
NC_008526:343445:3475193475193502872769Lactobacillus casei ATCC 334, complete genomeCRISPR-associated helicase6e-20100
NC_008054:745704:7546887546887574532766Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeCRISPR-associated helicase Cas34e-1377.4
NC_008529:735233:7468327468327495972766Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeCRISPR-associated helicase3e-1481.3
NC_014727:798191:8099868099868127512766Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,crispr-associated helicase cas37e-1376.6
NC_010610:795975:8050038050038077262724Lactobacillus fermentum IFO 3956, complete genomehypothetical protein4e-1170.9
NC_010610:1385066:1400770140077014032082439Lactobacillus fermentum IFO 3956, complete genomehypothetical protein1e-0862.4
NC_015975:1056731:1070620107062010729322313Lactobacillus ruminis ATCC 27782 chromosome, complete genomeCRISPR-associated helicase Cas32e-88327
NC_005823:1105524:1130506113050611327582253Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130ATP-dependent RNA helicase2e-1378.2
NC_004342:3164500:3167477316747731697352259Leptospira interrogans serovar Lai str. 56601 chromosome I,ATP-dependent RNA helicase2e-1378.6
NC_015387:942974:9498269498269526002775Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeCRISPR-associated helicase Cas35e-1893.6
NC_015435:1010973:1034037103403710355331497Metallosphaera cuprina Ar-4 chromosome, complete genomeCRISPR-associated helicase Cas3 family protein1e-1482.4
NC_008942:815280:8345898345898370932505Methanocorpusculum labreanum Z, complete genomehypothetical protein2e-1068.9
NC_015416:2838020:2843201284320128456032403Methanosaeta concilii GP-6 chromosome, complete genomeCRISPR-associated helicase Cas35e-1687
NC_015676:1663700:1675169167516916779222754Methanosalsum zhilinae DSM 4017 chromosome, complete genomeCRISPR-associated helicase Cas35e-1584
NC_003901:678340:6852926852926877242433Methanosarcina mazei Go1, complete genomehypothetical protein7e-0756.6
NC_007681:1082000:1085878108587810886312754Methanosphaera stadtmanae DSM 3091, complete genomepredicted helicase4e-0757.4
NC_007681:482445:4859174859174883042388Methanosphaera stadtmanae DSM 3091, complete genomepredicted helicase9e-0653.1
NC_000916:983500:1001172100117210036642493Methanothermobacter thermautotrophicus str. Delta H, completehypothetical protein1e-48195
NC_020126:9726992:9738646973864697408802235Myxococcus stipitatus DSM 14675, complete genomeCRISPR-associated helicase Cas32e-0965.1
NC_020126:10091703:1010406510104065101063772313Myxococcus stipitatus DSM 14675, complete genomeATP-dependent RNA helicase6e-1066.6
NC_008095:8837612:8867872886787288701122241Myxococcus xanthus DK 1622, complete genomeCRISPR-associated helicase Cas36e-0963.5
NC_014935:1047411:1058060105806010602372178Nitratifractor saLSUginis DSM 16511 chromosome, complete genomecrispr-associated helicase, cas3 family3e-0861.2
NC_006361:4574536:4590706459070645934502745Nocardia farcinica IFM 10152, complete genomehypothetical protein7e-1066.6
NC_009615:1354122:1372739137273913749642226Parabacteroides distasonis ATCC 8503 chromosome, complete genomehelicase1e-0759.7
NC_008609:2518993:2531914253191425345532640Pelobacter propionicus DSM 2379, complete genomeCRISPR-associated helicase Cas39e-1376.3
NC_012440:1249941:1259969125996912622182250Persephonella marina EX-H1, complete genomecrispr-associated helicase Cas31e-91338
NC_010003:2056000:2075621207562120778132193Petrotoga mobilis SJ95, complete genomeCRISPR-associated helicase Cas33e-0757.8
NC_015571:290355:3024493024493047522304Porphyromonas gingivalis TDC60, complete genomeCRISPR-associated helicase Cas33e-1894.4
NC_002950:2098454:2106124210612421084602337Porphyromonas gingivalis W83, complete genomeCRISPR-associated helicase Cas31e-1792
NC_019968:8397:1357413574157692196Prevotella dentalis DSM 3688 chromosome 2, complete sequenceCRISPR-associated helicase Cas3/CRISPR-associated endonuclease Cas3-HD5e-0757
NC_000961:135493:1538931538931559652073Pyrococcus horikoshii OT3, complete genomehypothetical protein2e-33145
NC_015680:1275252:1275252127525212773302079Pyrococcus yayanosii CH1 chromosome, complete genomeCRISPR-associated helicase Cas3 domain-containing protein5e-29130
NC_015680:841783:8522428522428538221581Pyrococcus yayanosii CH1 chromosome, complete genomeCRISPR-associated helicase Cas31e-0862.4
NC_015680:841783:8449328449328471092178Pyrococcus yayanosii CH1 chromosome, complete genomeCRISPR-associated helicase Cas32e-33145
NC_015677:3685452:3691484369148436937722289Ramlibacter tataouinensis TTB310 chromosome, complete genomehypothetical protein1e-0759.3
NC_007643:185135:2063192063192090812763Rhodospirillum rubrum ATCC 11170, complete genomeCRISPR-associated helicase Cas3, core3e-1687.4
NC_013501:1881692:1900060190006019024352376Rhodothermus marinus DSM 4252, complete genomeCRISPR-associated helicase Cas32e-22108
NC_015966:1316901:1323321132332113254982178Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomemetal dependent phosphohydrolase1e-28129
NC_009523:5438000:5448155544815554508692715Roseiflexus sp. RS-1 chromosome, complete genomeCRISPR-associated helicase Cas32e-0655.5
NC_013159:1422370:1428340142834014308382499Saccharomonospora viridis DSM 43017, complete genomeCRISPR-associated helicase Cas32e-23111
NC_019673:1988853:2042190204219020449372748Saccharothrix espanaensis DSM 44229 complete genomeCRISPR-associated helicase Cas38e-0756.2
NC_019673:2051363:2085060208506020872942235Saccharothrix espanaensis DSM 44229 complete genomeCRISPR-associated helicase Cas3 family protein protein3e-0654.7
NC_015436:1287873:1293817129381712964352619Spirochaeta coccoides DSM 17374 chromosome, complete genomeCRISPR-associated helicase Cas33e-1378.2
NC_014484:447889:4532194532194555282310Spirochaeta thermophila DSM 6192 chromosome, complete genomehypothetical protein9e-0859.7
NC_012470:1606000:1612460161246016149132454Streptococcus equi subsp. zooepidemicus, complete genomeCRISPR-associated helicase5e-0860.5
NC_016884:3219030:3251274325127432536402367Sulfobacillus acidophilus DSM 10332 chromosome, complete genomeCRISPR-associated HD domain-containing protein9e-1169.7
NC_015757:2343193:2373204237320423755702367Sulfobacillus acidophilus TPY chromosome, complete genomeCRISPR-associated helicase Cas39e-1169.7
NC_017275:342000:3508063508063523111506Sulfolobus islandicus HVE10/4 chromosome, complete genomeCRISPR-associated helicase Cas34e-1480.5
NC_013769:800000:8077438077438092661524Sulfolobus islandicus L.D.8.5 chromosome, complete genomeCRISPR-associated helicase Cas31e-1482.4
NC_012589:633500:6413616413616428661506Sulfolobus islandicus L.S.2.15, complete genomeCRISPR-associated helicase Cas39e-1582.8
NC_012588:800942:8150738150738167191647Sulfolobus islandicus M.14.25 chromosome, complete genomeCRISPR-associated helicase Cas35e-1273.9
NC_012588:857500:8650148650148665191506Sulfolobus islandicus M.14.25 chromosome, complete genomeCRISPR-associated helicase Cas32e-1585.1
NC_012632:943104:9537599537599552641506Sulfolobus islandicus M.16.27 chromosome, complete genomeCRISPR-associated helicase Cas36e-1583.6
NC_012632:884811:9003919003919020371647Sulfolobus islandicus M.16.27 chromosome, complete genomeCRISPR-associated helicase Cas35e-1273.9
NC_012726:850451:8684538684538699581506Sulfolobus islandicus M.16.4 chromosome, complete genomeCRISPR-associated helicase Cas34e-1584
NC_017276:735678:7456097456097471141506Sulfolobus islandicus REY15A chromosome, complete genomeCRISPR-associated helicase Cas31e-1379.3
NC_012622:681472:7119947119947134991506Sulfolobus islandicus Y.G.57.14 chromosome, complete genomeCRISPR-associated helicase Cas34e-1480.9
NC_012623:1874348:1881727188172718832321506Sulfolobus islandicus Y.N.15.51 chromosome, complete genomeCRISPR-associated helicase Cas33e-1480.9
NC_002754:1269463:1292310129231012938571548Sulfolobus solfataricus P2, complete genomeATP-dependent RNA helicase homolog1e-1585.9
NC_002754:1811500:1817612181761218191591548Sulfolobus solfataricus P2, complete genomeATP-dependent RNA helicase homolog2e-1481.6
NC_012438:776260:7906217906217929092289Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomeCRISPR-associated helicase Cas35e-0860.5
NC_006177:324363:3470963470963492552160Symbiobacterium thermophilum IAM 14863, complete genomehypothetical protein5e-0860.5
NC_007775:723925:7396277396277423082682Synechococcus sp. JA-3-3Ab, complete genomeCRISPR-associated helicase Cas39e-1582.8
NC_016610:2489415:2495937249593724980212085Tannerella forsythia ATCC 43037 chromosome, complete genomeCRISPR-associated helicase Cas31e-1689
NC_019897:3251639:3287049328704932894392391Thermobacillus composti KWC4 chromosome, complete genomeCRISPR-associated helicase Cas31e-0759.3
NC_015865:685882:6936206936206959262307Thermococcus sp. 4557 chromosome, complete genomeCRISPR-associated helicase Cas3-like protein4e-1790.5
NC_016051:460624:4687704687704713762607Thermococcus sp. AM4 chromosome, complete genomeCRISPR-associated helicase Cas38e-50199
NC_013894:1:1428214282159881707Thermocrinis albus DSM 14484 chromosome, complete genomeCRISPR-associated helicase Cas31e-65251
NC_011296:1039749:1058944105894410605751632Thermodesulfovibrio yellowstonii DSM 11347, complete genomeCRISPR-associated helicase Cas35e-20100
NC_017954:934616:9445079445079463391833Thermogladius cellulolyticus 1633 chromosome, complete genomehelicase3e-0654.7
NC_013510:1023348:1039357103935710424403084Thermomonospora curvata DSM 43183, complete genomemetal dependent phosphohydrolase1e-20102
NC_013510:3117837:3128254312825431311512898Thermomonospora curvata DSM 43183, complete genomeCRISPR-associated helicase Cas32e-0965.1
NC_014160:748743:7624207624207642341815Thermosphaera aggregans DSM 11486 chromosome, complete genomeCRISPR-associated helicase Cas31e-0655.8
NC_011978:699500:7092067092067103661161Thermotoga neapolitana DSM 4359, complete genomeCRISPR-associated helicase, Cas3 family1e-24115
NC_011978:699500:7103537103537115461194Thermotoga neapolitana DSM 4359, complete genomeCRISPR-associated helicase, Cas3 family4e-33143
NC_009486:1103915:1112028111202811143192292Thermotoga petrophila RKU-1 chromosome, complete genomeCRISPR-associated helicase Cas33e-59230