Pre_GI: BLASTP Hits

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Query: NC_020134:1328302:1339413 Clostridium stercorarium subsp. stercorarium DSM 8532, complete

Start: 1339413, End: 1339952, Length: 540

Host Lineage: Clostridium stercorarium; Clostridium; unclassified Ruminococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Lignocellulosic biomass has great potential as an abundant and renewable source of fermentable sugars through enzymic saccharification. Clostridium stercorarium is a catabolically versatile bacterium producing a wide range of hydrolases for degradation of biomass. Together with Clostridium thermocellum, Clostridium aldrichii and other cellulose degraders, it forms group I of the clostridia. It is moderately thermophilic, with an optimum growth temperature of 65 degrees C, and has repeatedly been isolated from self-heated compost. The two-component cellulase system of C. stercorarium has been investigated thoroughly. Due to its ability to utilize the various polysaccharides present in biomass it is especially suited for the fermentation of hemicellulose to organic solvents. Some isolates have been used in Japan in a single-step ethanol-fermenting pilot-process with lignocellulosic biomass as substrate.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016630:1385719:139310813931081393626519Filifactor alocis ATCC 35896 chromosome, complete genomeCro/CI family transcriptional regulator1e-37155
NC_009718:1411793:143010814301081430635528Fervidobacterium nodosum Rt17-B1, complete genomecupin 2 domain-containing protein3e-35147
NC_013939:1535071:155165715516571552193537Deferribacter desulfuricans SSM1, complete genomeXRE family transcriptional regulator1e-29129
NC_004461:779000:788650788650789189540Staphylococcus epidermidis ATCC 12228, complete genomehypothetical protein3e-29127
NC_014328:1286407:130205613020561302601546Clostridium ljungdahlii ATCC 49587 chromosome, complete genometranscriptional regulator2e-22105
NC_013716:357928:389831389831390388558Citrobacter rodentium ICC168, complete genometranscriptional regulator of the polyamine metabolism genes5e-1890.5
NC_014306:3210311:323155932315593232116558Erwinia billingiae Eb661, complete genomeTranscriptional regulator1e-1789
NC_014618:1809369:183324018332401833797558Enterobacter cloacae SCF1 chromosome, complete genomecupin3e-1787.8
NC_020064:1962172:199164219916421992199558Serratia marcescens FGI94, complete genomeputative transcriptional regulator5e-1787
NC_015723:2116090:211951321195132120103591Cupriavidus necator N-1 chromosome 2, complete sequenceN-carbamoyl-L-amino acid hydrolase AmaB1e-1685.9
NC_007948:3502843:352327835232783523883606Polaromonas sp. JS666, complete genometranscriptional regulator, XRE family with cupin sensor domain2e-1685.5
NC_006510:2910000:291967829196782920220543Geobacillus kaustophilus HTA426, complete genomehypothetical protein3e-1684.7
NC_014654:2311818:232518923251892325725537Halanaerobium sp. 'sapolanicus' chromosome, complete genomeCupin 2 conserved barrel domain protein2e-1581.6
NC_007907:4859735:487593148759314876476546Desulfitobacterium hafniense Y51, complete genomehypothetical protein5e-1580.5
NC_004129:2609189:261369426136942614242549Pseudomonas fluorescens Pf-5, complete genomeDNA-binding protein5e-1580.5
NC_018000:1852691:185968618596861860411726Sinorhizobium fredii USDA 257 chromosome, complete genomeXre family transcriptional regulator1e-1479.3
NC_017273:352150:357368357368357946579Thermus thermophilus SG0.5JP17-16 plasmid pTHTHE1601, completecupin3e-1477.8
NC_014640:5047201:504847650484765049030555Achromobacter xylosoxidans A8 chromosome, complete genomehypothetical protein5e-1477.4
NC_007907:4859735:487526948752694875916648Desulfitobacterium hafniense Y51, complete genomehypothetical protein8e-1476.6
NC_011144:2770842:278904627890462789666621Phenylobacterium zucineum HLK1, complete genometranscriptional regulator, Cro/CI family1e-1376.3
NC_014118:2417838:242979424297942430366573Burkholderia sp. CCGE1002 chromosome chromosome 2, completetranscriptional regulator, XRE family2e-1375.5
NC_014831:1843835:186641118664111867175765Thermaerobacter marianensis DSM 12885 chromosome, complete genomeCupin 2 conserved barrel domain protein5e-1373.9
NC_010511:4313769:431880843188084319359552Methylobacterium sp. 4-46 chromosome, complete genomeXRE family transcriptional regulator6e-1373.6
NC_014328:2518081:253808325380832538637555Clostridium ljungdahlii ATCC 49587 chromosome, complete genomehypothetical protein8e-1373.2
NC_012108:946314:962372962372962944573Desulfobacterium autotrophicum HRM2, complete genometranscriptional regulator (Cro/CI family protein)2e-1272
UCMB5137:1:101211012110666546Bacillus atrophaeus UCMB-5137unknown2e-1272
NC_012032:2925000:293613129361312936766636Chloroflexus sp. Y-400-fl, complete genometranscriptional regulator, XRE family2e-1272
NC_010175:2925084:294094629409462941581636Chloroflexus aurantiacus J-10-fl, complete genomeCupin 2 conserved barrel domain protein2e-1272
NC_010511:4313769:431666343166634317268606Methylobacterium sp. 4-46 chromosome, complete genomeXRE family transcriptional regulator3e-1271.6
NC_014532:2108897:211584221158422116432591Halomonas elongata DSM 2581, complete genomeprobable transcriptional regulator6e-1270.5
NC_014532:3596097:361884336188433619433591Halomonas elongata DSM 2581, complete genomeprobable transcriptional regulator6e-1270.5
NC_015500:900807:900807900807901394588Treponema brennaborense DSM 12168 chromosome, complete genomehelix-turn-helix domain protein2e-1168.6
NC_006350:1084930:108965110896511090214564Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative DNA-binding protein3e-1168.2
NC_007650:2901751:295029503558609Burkholderia thailandensis E264 chromosome II, complete sequenceDNA-binding protein3e-1167.8
NC_009075:3113393:294829483556609Burkholderia pseudomallei 668 chromosome II, complete sequenceDNA-binding protein3e-1167.8
NC_009078:3087759:294829483556609Burkholderia pseudomallei 1106a chromosome II, complete sequenceDNA-binding/cupin domain protein3e-1167.8
NC_007435:1825741:184202518420251842633609Burkholderia pseudomallei 1710b chromosome II, complete sequenceputative DNA-binding protein3e-1167.8
NC_015276:2769000:277194627719462772557612Marinomonas mediterranea MMB-1 chromosome, complete genomehelix-turn-helix domain protein5e-1167
NC_009079:2339756:408640864694609Burkholderia mallei NCTC 10247 chromosome I, complete sequenceDNA-binding protein1e-1065.9
NC_006351:3159630:294629463554609Burkholderia pseudomallei K96243 chromosome 2, complete sequenceDNA-binding protein1e-1065.9
NC_008835:1483237:149940114994011500009609Burkholderia mallei NCTC 10229 chromosome I, complete sequenceDNA-binding protein1e-1065.9
NC_008784:1151305:116827711682771168885609Burkholderia mallei SAVP1 chromosome I, complete sequenceDNA-binding protein1e-1065.9
NC_006349:2311817:408640864694609Burkholderia mallei ATCC 23344 chromosome 2, complete sequenceDNA-binding protein1e-1065.9
NC_014010:1850500:188064418806441881270627Candidatus Puniceispirillum marinum IMCC1322 chromosome, completeDNA-binding protein2e-1065.5
NC_009659:997779:100550010055001006123624Janthinobacterium sp. Marseille chromosome, complete genomeCro/CI family transcriptional regulator2e-1065.5
NC_009654:2940278:294247229424722943083612Marinomonas sp. MWYL1, complete genomeXRE family transcriptional regulator2e-1065.1
NC_015727:764744:769843769843770589747Cupriavidus necator N-1 plasmid BB1p, complete sequenceCro/CI family transcriptional regulator protein3e-1064.7
NC_016048:3856665:387693238769323877567636Oscillibacter valericigenes Sjm18-20, complete genomeputative Xre family DNA-binding protein1e-0962.8
NC_009617:1487110:149075414907541491308555Clostridium beijerinckii NCIMB 8052 chromosome, complete genomehelix-turn-helix domain-containing protein1e-0962.8
NC_008148:2498000:252032625203262520988663Rubrobacter xylanophilus DSM 9941, complete genometranscriptional regulator, XRE family with cupin sensor3e-0961.2
NC_017223:3345902:334953933495393350378840Bordetella pertussis CS chromosome, complete genomeMerR family transcriptional regulator7e-0960.1
NC_002929:3305682:330931933093193310158840Bordetella pertussis Tohama I, complete genomeprobable MerR-family transcriptional regulator7e-0960.1
NC_014624:1369642:137228713722871372838552Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein2e-0858.9
NC_014618:1103239:112495011249501125180231Enterobacter cloacae SCF1 chromosome, complete genomehelix-turn-helix domain-containing protein2e-0858.9
NC_007907:4956500:498991149899114990465555Desulfitobacterium hafniense Y51, complete genomehypothetical protein5e-0857.4
NC_009455:53000:812988129881921624Dehalococcoides sp. BAV1 chromosome, complete genomephage repressor like transcriptional regulator6e-0857
NC_014158:1479313:148582814858281486439612Tsukamurella paurometabola DSM 20162 chromosome, complete genometranscriptional regulator, XRE family8e-0856.6
NC_012667:1045782:106175010617501062373624Vibrio cholerae MJ-1236 chromosome 2, complete genomehypothetical protein1e-0755.8
NC_011768:3385719:341239234123923412739348Desulfatibacillum alkenivorans AK-01, complete genometranscriptional regulator, XRE family2e-0755.5
NC_011768:1718869:177180317718031772150348Desulfatibacillum alkenivorans AK-01, complete genometranscriptional regulator, XRE family2e-0755.1
NC_007644:1638083:166268516626851663587903Moorella thermoacetica ATCC 39073, complete genometranscriptional regulator, XRE family3e-0754.7
NC_016048:2907702:293945829394582940024567Oscillibacter valericigenes Sjm18-20, complete genomeputative Xre family DNA-binding protein6e-0753.5
NC_012522:7837071:785901578590157859641627Rhodococcus opacus B4, complete genomehypothetical protein6e-0753.5
NC_010424:697187:744858744858745595738Candidatus Desulforudis audaxviator MP104C, complete genomeputative prophage repressor1e-0652.8
NC_015562:1386535:141114614111461411523378Methanotorris igneus Kol 5 chromosome, complete genomeCupin 2 barrel domain-containing protein1e-0652.8
NC_012792:627500:637235637235637438204Variovorax paradoxus S110 chromosome 2, complete genometranscriptional regulator, XRE family1e-0652.8
NC_015567:2328782:233007923300792330642564Serratia sp. AS9 chromosome, complete genomehelix-turn-helix domain-containing protein1e-0652.8
NC_015566:2328771:233006823300682330631564Serratia sp. AS12 chromosome, complete genomehelix-turn-helix domain-containing protein1e-0652.8
NC_014966:795311:815631815631816254624Vibrio vulnificus MO6-24/O chromosome II, complete sequencetranscriptional regulator1e-0652.4
NC_006350:595893:606593606593607069477Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative DNA-binding protein2e-0652.4
NC_012912:1053618:106326310632631063553291Dickeya zeae Ech1591, complete genometranscriptional regulator, XRE family5e-0650.8
NC_009617:4805413:480886648088664809417552Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeXRE family transcriptional regulator4e-0650.8
NC_015558:1425271:144821814482181448961744Streptococcus parauberis KCTC 11537 chromosome, complete genomeputative repressor protein4e-0650.8
NC_015573:1979202:199861019986101999377768Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomehelix-turn-helix domain-containing protein5e-0650.4
NC_013521:345308:370775370775371347573Sanguibacter keddieii DSM 10542, complete genomepredicted transcriptional regulator6e-0650.4
NC_011883:519308:525082525082525729648Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,transcriptional regulator, XRE family9e-0649.7