Pre_GI: BLASTP Hits

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Query: NC_018080:5070687:5073731 Pseudomonas aeruginosa DK2 chromosome, complete genome

Start: 5073731, End: 5074297, Length: 567

Host Lineage: Pseudomonas aeruginosa; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This organism is an opportunistic human pathogen. While it rarely infects healthy individuals, immunocompromised patients, like burn victims, AIDS-, cancer- or cystic fibrosis-patients are at increased risk for infection with this environmentally versatile bacteria. It is an important soil bacterium with a complex metabolism capable of degrading polycyclic aromatic hydrocarbons, and producing interesting, biologically active secondary metabolites including quinolones, rhamnolipids, lectins, hydrogen cyanide, and phenazines. Production of these products is likely controlled by complex regulatory networks making Pseudomonas aeruginosa adaptable both to free-living and pathogenic lifestyles. The bacterium is naturally resistant to many antibiotics and disinfectants, which makes it a difficult pathogen to treat.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_020829:1068438:108490810849081085471564Pseudomonas denitrificans ATCC 13867, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase1e-74278
NC_009439:860571:878735878735879286552Pseudomonas mendocina ymp, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase1e-68258
NC_015410:969526:986337986337986888552Pseudomonas mendocina NK-01 chromosome, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase2e-66251
NC_007912:1111093:113516711351671135766600Saccharophagus degradans 2-40, complete genomeProlyl-tRNA synthetase2e-56218
NC_010694:891967:896775896775897350576Erwinia tasmaniensis, complete genomeN-acetylmuramyl L-alanine amydase8e-56216
NC_018868:3943088:396230739623073962897591Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase2e-55214
NC_012214:897206:902048902048902617570Erwinia pyrifoliae Ep1/96, complete genomeN-acetylmuramyl L-alanine amydase2e-55214
NC_013971:817284:821377821377821946570Erwinia amylovora ATCC 49946 chromosome, complete genomeN-acetylmuramyl l-alanine amydase1e-54212
NC_013961:2932348:294943629494362950005570Erwinia amylovora, complete genomeProtein ampD1e-54212
NC_011663:4579777:458443845844384585001564Shewanella baltica OS223 chromosome, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase6e-54209
NC_009665:4675289:468353546835354684098564Shewanella baltica OS185 chromosome, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase3e-53207
NC_007347:3204637:322724332272433227854612Ralstonia eutropha JMP134 chromosome 1, complete sequenceN-acetylmuramoyl-L-alanine amidase, family 27e-53206
NC_021066:3201500:320667332066733207236564Raoultella ornithinolytica B6, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase1e-52205
NC_008321:458811:472477472477473016540Shewanella sp. MR-4, complete genomeN-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD5e-51200
NC_010645:406794:450383450383450994612Bordetella avium 197N, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase1e-49196
NC_013959:2666321:267620226762022676738537Sideroxydans lithotrophicus ES-1 chromosome, complete genomeN-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD2e-47188
NC_008344:554229:557692557692558237546Nitrosomonas eutropha C91, complete genomeN-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD3e-47187
NC_002927:506183:533836533836534417582Bordetella bronchiseptica RB50, complete genomeN-acetylmuramoyl-L-alanine amidase1e-46186
NC_002928:507749:532483532483533064582Bordetella parapertussis 12822, complete genomeN-acetylmuramoyl-L-alanine amidase1e-46186
NC_011901:625712:664744664744665313570Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, completeN-acetyl-anhydromuranmyl-L-alanine amidase7e-47186
NC_017223:51180:743587435874939582Bordetella pertussis CS chromosome, complete genomeN-acetyl-anhydromuranmyl-L-alanine amidase2e-46185
NC_002929:52500:743587435874939582Bordetella pertussis Tohama I, complete genomeN-acetylmuramoyl-L-alanine amidase2e-46185
NC_016616:134449:135991135991136563573Dechlorosoma suillum PS chromosome, complete genomenegative regulator of beta-lactamase expression7e-45179
NC_015850:2451957:245308224530822453636555Acidithiobacillus caldus SM-1 chromosome, complete genomeN-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD9e-45179
NC_011662:1160887:118389311838931184420528Thauera sp. MZ1T, complete genomeN-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD2e-41168
NC_013508:3188978:321210932121093212879771Edwardsiella tarda EIB202, complete genomeprobable N-acetylmuramoyl-L-alanine amidase4e-1581.3
NC_010067:892729:912875912875913576702Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein8e-1580.1
NC_012779:3316877:332413933241393324909771Edwardsiella ictaluri 93-146, complete genomeN-acetylmuramoyl-L-alanine amidase AmiD9e-1579.7
NC_014932:1232346:126256212625621263332771Bartonella clarridgeiae 73, complete genomeN-acetylmuramoyl-L-alanine amidase amiD precursor4e-1477.8
NC_012779:2127542:213393121339312134815885Edwardsiella ictaluri 93-146, complete genomeN-acetylmuramoyl-L-alanine amidase AmiD3e-1375.1
NC_013956:1994970:200984520098452010738894Pantoea ananatis LMG 20103 chromosome, complete genomeYbjR8e-1270.1
NC_016816:2508204:251215125121512513044894Pantoea ananatis LMG 5342, complete genomeN-acetylmuramoyl-L-alanine amidase AmiD9e-1270.1
NC_013971:1927510:194581519458151946684870Erwinia amylovora ATCC 49946 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase2e-1168.9
NC_013961:1891000:190828819082881909157870Erwinia amylovora, complete genomeprobable N-acetylmuramoyl-L-alanine amidase2e-1168.9
NC_014532:1481787:150366215036621504546885Halomonas elongata DSM 2581, complete genomeN-acetylmuramoyl-L-alanine amidase domain protein2e-1168.6
NC_013517:2633574:265363326536332654463831Sebaldella termitidis ATCC 33386, complete genomeN-acetylmuramyl-L-alanine amidase, negative regulator of AmpC, AmpD4e-1167.8
NC_019907:845663:849699849699850544846Liberibacter crescens BT-1 chromosome, complete genomeN-acetylmuramoyl-L-alanine amidase2e-0962
NC_002929:2589202:258920225892022590029828Bordetella pertussis Tohama I, complete genomeputative exported hydrolase4e-0961.2
NC_013595:3712257:3725059372505937265011443Streptosporangium roseum DSM 43021, complete genomeNegative regulator of beta-lactamase expression- like protein3e-0651.6