Pre_GI: BLASTP Hits

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Query: NC_017986:5605197:5631157 Pseudomonas putida ND6 chromosome, complete genome

Start: 5631157, End: 5632029, Length: 873

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012880:1585255:160704616070461608035990Dickeya dadantii Ech703, complete genometranscriptional regulator, AraC family1e-50200
NC_010338:4148667:416203941620394162932894Caulobacter sp. K31, complete genometranscriptional regulator, AraC family9e-30130
NC_013730:4811911:482916548291654830043879Spirosoma linguale DSM 74, complete genometranscriptional regulator, AraC family8e-21100
NC_010468:4059436:405943640594364060326891Escherichia coli ATCC 8739, complete genometranscriptional regulator, AraC family2e-1996.7
NC_012962:1041518:106408610640861064976891Photorhabdus asymbiotica, complete genomeregulator of the 4hpa-hydroxylase operon2e-1996.7
NC_015376:1752883:177295817729581773878921Burkholderia gladioli BSR3 chromosome chromosome 2, completeAraC family transcriptional regulator9e-1994.4
NC_016609:4233701:424485042448504245719870Niastella koreensis GR20-10 chromosome, complete genomeAraC family transcriptional regulator4e-1789
NC_014041:1395761:140434314043431404846504Zunongwangia profunda SM-A87 chromosome, complete genome4-hydroxyphenylacetate catabolism regulatory protein HpaA7e-1788.2
NC_013037:1015210:103550010355001036360861Dyadobacter fermentans DSM 18053, complete genometranscriptional regulator, AraC family7e-1581.3
NC_013132:705314:708270708270709112843Chitinophaga pinensis DSM 2588, complete genometranscriptional regulator, AraC family1e-1480.9
NC_009901:3317068:332237033223703323242873Shewanella pealeana ATCC 700345, complete genometranscriptional regulator, AraC family1e-1480.9
NC_014622:724000:725554725554726447894Paenibacillus polymyxa SC2 chromosome, complete genometranscriptional regulator7e-1478.2
NC_004547:1837500:184938418493841850334951Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeAraC-family transcriptional regulator8e-1477.8
NC_019968:1084288:110312511031251103973849Prevotella dentalis DSM 3688 chromosome 2, complete sequenceDNA-binding domain-containing protein, AraC-type1e-1377.4
NC_016114:7282882:730901673090167309861846Streptomyces flavogriseus ATCC 33331 chromosome, complete genomeAraC family transcriptional regulator2e-1376.6
NC_014933:3856561:387760838776083878456849Bacteroides helcogenes P 36-108 chromosome, complete genometranscriptional regulator, AraC family2e-1376.6
NC_020054:465413:482880482880483734855Fibrella aestuarina BUZ 2 drat genometranscriptional regulator, AraC family7e-1374.7
NC_010623:1961685:201867520186752019634960Burkholderia phymatum STM815 chromosome 2, complete sequencetranscriptional regulator, AraC family1e-1274.3
NC_003228:2473956:247395624739562474882927Bacteroides fragilis NCTC 9343, complete genomeputative AraC family transcriptional regulator1e-1274.3
NC_002950:1511955:153145315314531532301849Porphyromonas gingivalis W83, complete genometranscriptional regulator, AraC family1e-1273.6
NC_002950:879930:883361883361884209849Porphyromonas gingivalis W83, complete genometranscriptional regulator, AraC family1e-1273.6
NC_004129:926479:934135934135934989855Pseudomonas fluorescens Pf-5, complete genometranscriptional regulator, AraC family2e-1273.2
NC_015311:2626850:264619326461932647041849Prevotella denticola F0289 chromosome, complete genomeAraC family transcriptional regulator5e-1271.6
NC_019673:3726519:373763037376303738475846Saccharothrix espanaensis DSM 44229 complete genomeTranscriptional regulator5e-1271.6
NC_014391:1812500:181434718143471815264918Micromonospora aurantiaca ATCC 27029 chromosome, complete genomehypothetical protein6e-1271.6
NC_014815:2055286:205897420589742059891918Micromonospora sp. L5 chromosome, complete genomehelix-turn-helix, arac domain protein6e-1271.6
NC_014934:4834000:483478048347804835673894Cellulophaga algicola DSM 14237 chromosome, complete genometranscriptional regulator, arac family1e-1170.9
NC_015947:1937341:195358619535861954440855Burkholderia sp. JV3 chromosome, complete genomeAraC family transcriptional regulator1e-1170.9
NC_014655:2366201:237290323729032373763861Leadbetterella byssophila DSM 17132 chromosome, complete genometranscriptional regulator, arac family1e-1170.5
NC_018524:4988810:501243150124315012778348Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomebacterial regulatory helix-turn-helix s, AraC family protein2e-1170.1
NC_014206:3391352:3391352339135233929441593Geobacillus sp. C56-T3 chromosome, complete genomeAraC family transcriptional regulator2e-1169.7
NC_004547:1873390:188300518830051883862858Erwinia carotovora subsp. atroseptica SCRI1043, complete genomeAraC-family transcriptional regulator4e-1168.9
NC_009441:3522519:353988035398803540680801Flavobacterium johnsoniae UW101 chromosome, complete genomehelix-turn-helix domain-containing protein5e-1168.6
NC_019960:1658657:173379017337901734695906Prevotella dentalis DSM 3688 chromosome 1, complete sequenceDNA-binding domain-containing protein, AraC-type6e-1168.6
NC_016609:1305570:130853413085341309397864Niastella koreensis GR20-10 chromosome, complete genomeAraC family transcriptional regulator6e-1168.2
NC_016582:1639375:165691016569101657806897Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative transcriptional regulator7e-1168.2
NC_015434:1885373:188757818875781888468891Verrucosispora maris AB-18-032 chromosome, complete genomehelix-turn-helix, arac domain-containing protein2e-1067
NC_013730:4502965:452139745213974522266870Spirosoma linguale DSM 74, complete genometranscriptional regulator, AraC family2e-1066.2
NC_015164:1952500:197383319738331974720888Bacteroides salanitronis DSM 18170 chromosome, complete genometranscriptional regulator, AraC family3e-1066.2
NC_005126:4423964:444190744419074442725819Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein3e-1065.9
NC_015164:1952500:195627119562711957128858Bacteroides salanitronis DSM 18170 chromosome, complete genometranscriptional regulator, AraC family5e-1065.1
NC_013132:153163:156153156153157094942Chitinophaga pinensis DSM 2588, complete genometranscriptional regulator, AraC family6e-1065.1
NC_013406:4478000:449808544980854498942858Paenibacillus sp. Y412MC10 chromosome, complete genomeAraC family transcriptional regulator6e-1065.1
NC_009615:919495:925663925663926541879Parabacteroides distasonis ATCC 8503 chromosome, complete genometranscriptional regulator6e-1064.7
NC_012962:1189021:118902111890211189839819Photorhabdus asymbiotica, complete genomesimilar to the transcriptional activator protein exsa/virf8e-1064.7
NC_010995:1648897:1664476166447616654831008Cellvibrio japonicus Ueda107, complete genometranscriptional regulator, AraC family9e-1064.3
NC_014624:1840209:1866679186667918680071329Eubacterium limosum KIST612 chromosome, complete genometranscriptional regulator1e-0963.9
NC_004663:2246756:224892422489242249814891Bacteroides thetaiotaomicron VPI-5482, complete genomeputative transcriptional regulator1e-0963.5
NC_014366:1663034:1664567166456716656041038Gamma proteobacterium HdN1, complete genometranscriptional regulator, AraC family2e-0963.2
NC_015690:2369510:237275123727512373644894Paenibacillus mucilaginosus KNP414 chromosome, complete genomeAraC family transcriptional regulator2e-0963.2
NC_016935:2918689:292111229211122922005894Paenibacillus mucilaginosus 3016 chromosome, complete genomeAraC family transcriptional regulator2e-0963.2
NC_009614:3476000:349131434913143492150837Bacteroides vulgatus ATCC 8482 chromosome, complete genometranscriptional regulator3e-0962.8
NC_008262:1139500:114416611441661144918753Clostridium perfringens SM101, complete genomeDNA-binding response regulator3e-0962.8
NC_020054:3132478:313830531383053139264960Fibrella aestuarina BUZ 2 drat genometranscriptional regulator, AraC family4e-0962.4
NC_003366:1122654:112669011266901127442753Clostridium perfringens str. 13, complete genometwo-component response regulator3e-0962.4
NC_008261:1332864:133755413375541338306753Clostridium perfringens ATCC 13124, complete genomeDNA-bindng response regulator, AraC family3e-0962.4
NC_015690:1542061:156474015647401565588849Paenibacillus mucilaginosus KNP414 chromosome, complete genomeAraC family transcriptional regulator5e-0962
NC_013730:778076:782821782821783741921Spirosoma linguale DSM 74, complete genometranscriptional regulator, AraC family5e-0962
NC_016935:2069562:209206820920682092916849Paenibacillus mucilaginosus 3016 chromosome, complete genomeAraC family transcriptional regulator5e-0962
NC_020210:1275031:134529713452971346094798Geobacillus sp. GHH01, complete genometwo-component response regulator7e-0961.6
NC_018681:5490963:551799755179975518839843Nocardia brasiliensis ATCC 700358 chromosome, complete genometranscriptional regulatory protein6e-0961.6
NC_004663:3680974:369676236967623697673912Bacteroides thetaiotaomicron VPI-5482, complete genomeputative transcriptional regulator7e-0961.2
NC_013406:4323338:433746343374634338056594Paenibacillus sp. Y412MC10 chromosome, complete genomeAraC family transcriptional regulator7e-0961.2
NC_013730:4502965:452028045202804521137858Spirosoma linguale DSM 74, complete genometranscriptional regulator, AraC family9e-0960.8
NC_004663:1365429:137704613770461377882837Bacteroides thetaiotaomicron VPI-5482, complete genomeAraC-type transcription regulator1e-0860.8
NC_011830:1923158:193510919351091935930822Desulfitobacterium hafniense DCB-2, complete genometranscriptional regulator, AraC family2e-0860.1
NC_014654:1113116:1115573111557311171861614Halanaerobium sp. 'sapolanicus' chromosome, complete genometwo component transcriptional regulator, AraC family2e-0860.1
NC_009441:5248791:526511952651195265988870Flavobacterium johnsoniae UW101 chromosome, complete genomehelix-turn-helix domain-containing protein2e-0859.7
NC_016776:2516149:252699725269972527836840Bacteroides fragilis 638R, complete genomeputative AraC-type transcriptional regulator3e-0859.3
NC_016609:6022778:603476460347646035642879Niastella koreensis GR20-10 chromosome, complete genomeAraC family transcriptional regulator3e-0859.3
NC_016627:1485799:152182415218241522717894Clostridium clariflavum DSM 19732 chromosome, complete genomeDNA-binding domain-containing protein3e-0859.3
NC_003228:2437288:244229724422972443136840Bacteroides fragilis NCTC 9343, complete genomeputative AraC-type transcriptional regulator3e-0859.3
NC_006347:2375480:238632923863292387168840Bacteroides fragilis YCH46, complete genomeAraC-type transcription regulator3e-0859.3
NC_015732:30472:3390633906353961491Spirochaeta caldaria DSM 7334 chromosome, complete genometwo component AraC family transcriptional regulator4e-0858.9
NC_007952:3196085:323128132312813232249969Burkholderia xenovorans LB400 chromosome 2, complete sequenceTranscriptional regulator, AraC family5e-0858.5
NC_003228:793846:809965809965810840876Bacteroides fragilis NCTC 9343, complete genomeputative AraC-family regulatory protein8e-0858.2
NC_016776:844641:860760860760861635876Bacteroides fragilis 638R, complete genomeputative AraC-family regulatory protein8e-0858.2
NC_015690:1726000:174471817447181745548831Paenibacillus mucilaginosus KNP414 chromosome, complete genomeAraC family transcriptional regulator7e-0858.2
NC_020063:4653422:465342246534224654258837Enterobacteriaceae bacterium strain FGI 57, complete genometranscriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain7e-0858.2
NC_014364:3633291:363889336388933639771879Spirochaeta smaragdinae DSM 11293 chromosome, complete genometranscriptional regulator, AraC family7e-0858.2
NC_016935:2256000:227476222747622275592831Paenibacillus mucilaginosus 3016 chromosome, complete genomeAraC family transcriptional regulator7e-0858.2
NC_014624:3463272:3467956346795634692181263Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein1e-0757.8
NC_016609:4331359:434339043433904344277888Niastella koreensis GR20-10 chromosome, complete genomeAraC family transcriptional regulator9e-0857.8
NC_016776:3973428:398739639873963988241846Bacteroides fragilis 638R, complete genomeputative AraC-family regulatory protein9e-0857.8
NC_003228:3934770:394874239487423949587846Bacteroides fragilis NCTC 9343, complete genomeputative AraC-family regulatory protein9e-0857.8
NC_013766:1202713:120444412044441205328885Listeria monocytogenes 08-5578 chromosome, complete genometranscriptional regulator PocR8e-0857.8
NC_006347:854301:873322873322874197876Bacteroides fragilis YCH46, complete genomehypothetical protein8e-0857.8
NC_014933:3688000:370697437069743707867894Bacteroides helcogenes P 36-108 chromosome, complete genometranscriptional regulator, AraC family8e-0857.8
NC_014532:2268078:2293904229390422949321029Halomonas elongata DSM 2581, complete genometranscriptional regulator, AraC family1e-0757.4
NC_015690:1818333:1872120187212018737301611Paenibacillus mucilaginosus KNP414 chromosome, complete genomeYbbB1e-0757.4
NC_016935:2347691:2401895240189524035051611Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein1e-0757.4
NC_015379:5002595:500754250075425008411870Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,Putative response regulator, YesN family1e-0757.4
NC_012488:1159463:116249011624901163374885Listeria monocytogenes Clip81459, complete genomeregulatory protein1e-0757
NC_016830:4914406:491949249194924920238747Pseudomonas fluorescens F113 chromosome, complete genometwo-component response regulator1e-0757
NC_012914:569471:603552603552604445894Paenibacillus sp. JDR-2, complete genometranscriptional regulator, AraC family2e-0757
NC_013406:1640787:1643715164371516449321218Paenibacillus sp. Y412MC10 chromosome, complete genometwo component AraC family transcriptional regulator2e-0757
NC_006347:4031000:404498540449854045563579Bacteroides fragilis YCH46, complete genometranscriptional regulator2e-0757
NC_010001:4730000:473538047353804736159780Clostridium phytofermentans ISDg, complete genometwo component transcriptional regulator, AraC family2e-0756.6
NC_010723:2082750:209660120966012097335735Clostridium botulinum E3 str. Alaska E43, complete genomeDNA-bindng response regulator, AraC family2e-0756.6
NC_013132:1652477:165247716524771653346870Chitinophaga pinensis DSM 2588, complete genometranscriptional regulator, AraC family2e-0756.6
NC_014833:406889:408160408160408990831Ruminococcus albus 7 chromosome, complete genomeAraC family transcriptional regulator2e-0756.6
NC_016609:4331359:433606443360644336966903Niastella koreensis GR20-10 chromosome, complete genomeAraC family transcriptional regulator3e-0756.2
NC_016935:976059:979903979903980871969Paenibacillus mucilaginosus 3016 chromosome, complete genomeAraC family transcriptional regulator3e-0756.2
NC_016609:4834378:487799848779984878891894Niastella koreensis GR20-10 chromosome, complete genomeAraC family transcriptional regulator3e-0756.2
NC_010320:1949852:1967413196741319690051593Thermoanaerobacter sp. X514 chromosome, complete genomeresponse regulator receiver protein3e-0756.2
NC_014538:985339:9853399853399869311593Thermoanaerobacter sp. X513 chromosome, complete genomeAraC family two component transcriptional regulator3e-0756.2
NC_014923:79370:825898258983569981Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completehelix-turn-helix- domain containing protein AraC type3e-0755.8
NC_016613:2759908:278571527857152786443729Vibrio sp. EJY3 chromosome 1, complete sequencehypothetical protein3e-0755.8
NC_015690:977131:9771319771319781321002Paenibacillus mucilaginosus KNP414 chromosome, complete genomeAraC family transcriptional regulator3e-0755.8
NC_017195:742298:7433557433557456402286Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completetranscriptional regulator, AraC family protein5e-0755.5
NC_009483:3644677:366996336699633670763801Geobacter uraniireducens Rf4 chromosome, complete genomeresponse regulator receiver protein5e-0755.5
NC_014217:4550544:456353645635364564432897Starkeya novella DSM 506 chromosome, complete genometranscriptional regulator, AraC family4e-0755.5
NC_015732:684000:6900326900326933733342Spirochaeta caldaria DSM 7334 chromosome, complete genomeAraC family transcriptional regulator4e-0755.5
NC_015690:4361000:442089344208934421756864Paenibacillus mucilaginosus KNP414 chromosome, complete genomeAraC family transcriptional regulator4e-0755.5
NC_016935:4117485:418696441869644187827864Paenibacillus mucilaginosus 3016 chromosome, complete genomeAraC family transcriptional regulator4e-0755.5
NC_003228:3085793:308968830896883090575888Bacteroides fragilis NCTC 9343, complete genomeputative AraC-family transcriptional regulator4e-0755.5
NC_010001:1884500:189859418985941899421828Clostridium phytofermentans ISDg, complete genometranscriptional regulator, AraC family6e-0755.1
NC_013730:2359939:235993923599392360808870Spirosoma linguale DSM 74, complete genometranscriptional regulator, AraC family6e-0755.1
NC_014554:3164599:317762331776233178360738Lactobacillus plantarum subsp. plantarum ST-III chromosome,transcription regulator5e-0755.1
NC_004668:241352:263532263532264098567Enterococcus faecalis V583, complete genomeada regulatory protein, putative5e-0755.1
NC_015846:2285017:2287061228706122899012841Capnocytophaga canimorsus Cc5 chromosome, complete genomeAutoinducer 2 sensor kinase/phosphatase luxQ5e-0755.1
NC_009436:2056000:206845420684542069380927Enterobacter sp. 638, complete genomeAraC family transcriptional regulator1e-0654.3
NC_014976:2981777:2983740298374029860252286Bacillus subtilis BSn5 chromosome, complete genomeAraC/XylS family transcriptional regulator1e-0654.3
NC_016047:876875:8788388788388811232286Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completeAraC family transcriptional regulator1e-0654.3
NC_014479:736102:7361027361027383872286Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeAraC/XylS family transcriptional regulator1e-0654.3
NC_015690:3438288:3441871344187134430911221Paenibacillus mucilaginosus KNP414 chromosome, complete genomeAraC family transcriptional regulator1e-0653.9
NC_016935:3994500:3997754399775439989741221Paenibacillus mucilaginosus 3016 chromosome, complete genomeAraC family transcriptional regulator1e-0653.9
NC_015563:4206112:422286042228604223852993Delftia sp. Cs1-4 chromosome, complete genomeAraC family transcriptional regulator1e-0653.9
NC_015690:4592582:4614154461415446153981245Paenibacillus mucilaginosus KNP414 chromosome, complete genometwo component AraC family transcriptional regulator1e-0653.9
NC_018870:354164:3720013720013733231323Thermacetogenium phaeum DSM 12270 chromosome, complete genometranscriptional regulator, AraC family1e-0653.9
NC_012779:916000:933332933332933793462Edwardsiella ictaluri 93-146, complete genomeEsrC1e-0653.9
NC_020244:783125:7831257831257854102286Bacillus subtilis XF-1, complete genomehypothetical protein1e-0653.9
NC_000964:764118:7651757651757674602286Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein1e-0653.9
NC_015723:430165:445557445557446420864Cupriavidus necator N-1 chromosome 2, complete sequencetranscriptional regulator1e-0653.9
NC_019896:3281193:3296019329601932983042286Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completehypothetical protein1e-0653.9
NC_015436:202384:203058203058203828771Spirochaeta coccoides DSM 17374 chromosome, complete genometwo component transcriptional regulator, AraC family2e-0653.5
NC_011979:589874:594253594253595227975Geobacter sp. FRC-32, complete genometranscriptional regulator, AraC family2e-0653.5
NC_003911:1749467:176841817684181769224807Silicibacter pomeroyi DSS-3, complete genometranscriptional regulator, AraC family2e-0653.5
NC_009441:4218434:423875042387504239445696Flavobacterium johnsoniae UW101 chromosome, complete genomehelix-turn-helix domain-containing protein2e-0653.5
NC_018750:1835500:184518618451861846073888Streptomyces venezuelae ATCC 10712, complete genomeTranscriptional regulator, AraC family2e-0653.1
NC_015690:1818333:185256018525601853339780Paenibacillus mucilaginosus KNP414 chromosome, complete genomehypothetical protein2e-0653.1
NC_016935:2347691:238243423824342383126693Paenibacillus mucilaginosus 3016 chromosome, complete genomehypothetical protein2e-0653.1
NC_021177:1736854:176858517685851769463879Streptomyces fulvissimus DSM 40593, complete genomeTranscriptional regulator3e-0652.8
NC_013205:2332174:234776623477662348590825Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,transcriptional regulator, AraC family3e-0652.8
NC_008573:195317:224184224184225119936Shewanella sp. ANA-3 plasmid 1, complete sequencetranscriptional regulator, AraC family3e-0652.8
NC_016633:541559:555866555866556687822Sphaerochaeta pleomorpha str. Grapes chromosome, complete genomeDNA-binding domain-containing protein3e-0652.8
NC_013282:3216226:322395232239523224848897Cronobacter turicensis, complete genomehypothetical protein3e-0652.8
NC_010572:6463939:647037164703716471249879Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative AraC-family transcriptional regulator3e-0652.4
NC_014622:3955851:3978024397802439797451722Paenibacillus polymyxa SC2 chromosome, complete genomeABC fe(3+) transporter permease3e-0652.4
NC_013132:3877500:390580239058023906800999Chitinophaga pinensis DSM 2588, complete genometranscriptional regulator, AraC family5e-0652
NC_019968:1084288:111575611157561116283528Prevotella dentalis DSM 3688 chromosome 2, complete sequence4e-0652
NC_016077:702000:723122723122724057936Acidaminococcus intestini RyC-MR95 chromosome, complete genomehypothetical protein6e-0651.6
NC_013406:3874157:388727238872723888165894Paenibacillus sp. Y412MC10 chromosome, complete genomeAraC family transcriptional regulator6e-0651.6
NC_015376:3320818:3324114332411433251301017Burkholderia gladioli BSR3 chromosome chromosome 2, completeAraC family transcriptional regulator7e-0651.6
NC_009921:7249249:725775972577597258187429Frankia sp. EAN1pec, complete genometranscriptional regulator, AraC family7e-0651.2