Pre_GI: BLASTN Hits

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Query: NC_017429:639530 Chlamydia trachomatis G/9768 chromosome, complete genome

Start: 639530, End: 662099, Length: 22570

Host Lineage: Chlamydia trachomatis; Chlamydia; Chlamydiaceae; Chlamydiales; Chlamydiae; Bacteria

General Information: Bacteria belonging to the Chlamydiales group are obligate intracellular parasites of eukaryotic cells. They are found within vertebrates, invertebrate cells, and amoebae hosts. Chlamydiae are one of the commonest causes of sexually transmitted diseases (STDs) and if left untreated may cause infertility in women. They are transmitted by direct contact or aerosols, and can cause various diseases, while also being able to coexist with the host in an apparently asymptomatic state. This species causes infection that leads to blindness and sexually transmitted diseases in humans. There are 15 serovariants that preferentially cause disease in either the eye or the urogenital tract. The trachoma (infection of the mucous membrane of the eyelids) biovars are noninvasive and can cause blinding trachoma (variants A, B, Ba, and C), or sexually transmitted diseases (variants, D, E, F, G, H, I, J, and K). The lymphogranuloma venereum biovars (variants L1, L2, and L3) can cross the epithelial cells of mucous membranes and then travel through the lymphatic system where they multiply within mononuclear phagocytes found within the lymph nodes.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_000117:639268*63926866312423857Chlamydia trachomatis D/UW-3/CX, complete genome024040BLASTN svgBLASTP svg
NC_010280:957890*95789098027722388Chlamydia trachomatis L2b/UCH-1/proctitis, complete genome023190BLASTN svgBLASTP svg
NC_010287:957862*95786298024922388Chlamydia trachomatis 434/Bu, complete genome023180BLASTN svgBLASTP svg
NC_020248:1087940*1087940110834420405Chlamydophila psittaci Mat116, complete genome6e-35157BLASTN svgBLASTP svg
NC_015470:1096232*1096232111518818957Chlamydophila psittaci 6BC chromosome, complete genome6e-35157BLASTN svgBLASTP svg
NC_019908:982471*982471100686924399Brachyspira pilosicoli P43/6/78 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_009727:1542000*1542000156409922100Coxiella burnetii Dugway 7E9-12, complete genome3e-0661.9BLASTN svgBLASTP svg