Pre_GI: BLASTP Hits

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Query: NC_017379:1035464:1070657 Helicobacter pylori Puno135 chromosome, complete genome

Start: 1070657, End: 1072504, Length: 1848

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017357:973392:9951419951419969881848Helicobacter pylori 908 chromosome, complete genomeArginine decarboxylase01258
NC_017280:689067:7110537110537128851833Campylobacter jejuni subsp. jejuni M1 chromosome, complete genomearginine decarboxylase0806
NC_014935:1047411:1048119104811910499871869Nitratifractor saLSUginis DSM 16511 chromosome, complete genomearginine decarboxylase0785
NC_014958:1335650:1340857134085713427671911Deinococcus maricopensis DSM 21211 chromosome, complete genomeBiosynthetic arginine decarboxylase2e-109397
NC_004663:4373902:4373902437390243757941893Bacteroides thetaiotaomicron VPI-5482, complete genomearginine decarboxylase6e-103375
NC_014541:643604:6594636594636613641902Ferrimonas balearica DSM 9799 chromosome, complete genomearginine decarboxylase1e-102374
NC_014221:78500:9661296612985251914Truepera radiovictrix DSM 17093 chromosome, complete genomearginine decarboxylase7e-102371
NC_008322:1898000:1918570191857019204831914Shewanella sp. MR-7, complete genomearginine decarboxylase1e-98361
NC_015311:720631:7240017240017258931893Prevotella denticola F0289 chromosome, complete genomearginine 2-monooxygenase6e-97355
NC_007516:2277910:2319084231908423210121929Synechococcus sp. CC9605, complete genomearginine decarboxylase3e-96353
NC_009482:2051890:2070063207006320719851923Synechococcus sp. RCC307 chromosome, complete genomearginine decarboxylase3e-96352
NC_010334:2131939:2155434215543421573471914Shewanella halifaxensis HAW-EB4, complete genomearginine decarboxylase6e-96352
NC_007645:6500059:6544031654403165459411911Hahella chejuensis KCTC 2396, complete genomearginine decarboxylase3e-95350
NC_019771:3371000:3371077337107733730892013Anabaena cylindrica PCC 7122, complete genomearginine decarboxylase5e-93342
NC_007760:2126956:2146771214677121487351965Anaeromyxobacter dehalogenans 2CP-C, complete genomearginine decarboxylase2e-92340
NC_010571:4483500:4508623450862345105601938Opitutus terrae PB90-1, complete genomearginine decarboxylase4e-92339
NC_016818:3816000:3828157382815738301391983Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completearginine decarboxylase2e-91337
NC_015061:3801927:3816567381656738185491983Rahnella sp. Y9602 chromosome, complete genomearginine decarboxylase4e-91336
NC_017047:3869350:3883958388395838859401983Rahnella aquatilis HX2 chromosome, complete genomearginine decarboxylase4e-91336
NC_009481:2204629:2209313220931322112231911Synechococcus sp. WH 7803 chromosome, complete genomearginine decarboxylase8e-91335
NC_010655:2000025:2004200200420020061371938Akkermansia muciniphila ATCC BAA-835, complete genomearginine decarboxylase2e-90333
NC_009925:1617414:1635648163564816376722025Acaryochloris marina MBIC11017, complete genomearginine decarboxylase5e-90332
NC_015740:926920:9411809411809430931914Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completearginine decarboxylase2e-89330
NC_011071:4235830:4238057423805742399461890Stenotrophomonas maltophilia R551-3, complete genomearginine decarboxylase3e-89330
NC_015947:4196800:4199064419906442009531890Burkholderia sp. JV3 chromosome, complete genomearginine decarboxylase3e-89330
NC_009434:1068281:1082393108239310843061914Pseudomonas stutzeri A1501, complete genomearginine decarboxylase3e-89329
NC_009654:3215205:3216131321613132180351905Marinomonas sp. MWYL1, complete genomearginine decarboxylase7e-89328
NC_010943:4476654:4476654447665444785431890Stenotrophomonas maltophilia K279a, complete genomeputative biosynthetic arginine decarboxylase4e-87322
NC_010995:1749054:1749054174905417509761923Cellvibrio japonicus Ueda107, complete genomearginine decarboxylase2e-85317
NC_015152:1602412:1625469162546916273821914Spirochaeta sp. Buddy chromosome, complete genomearginine decarboxylase1e-84314
NC_019940:2834850:2834850283485028367421893Thioflavicoccus mobilis 8321 chromosome, complete genomearginine decarboxylase5e-83309
NC_015966:1661329:1680197168019716821581962Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomearginine decarboxylase2e-76286
NC_015499:119200:1571581571581584411284Thermodesulfobium narugense DSM 14796 chromosome, complete genomediaminopimelate decarboxylase4e-1273.9
NC_009634:547995:5668635668635681731311Methanococcus vannielii SB chromosome, complete genomediaminopimelate decarboxylase6e-1066.2
NC_015975:923812:9264739264739277801308Lactobacillus ruminis ATCC 27782 chromosome, complete genomeDiaminopimelate decarboxylase1e-0965.5
NC_013943:2610902:2621004262100426222631260Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomediaminopimelate decarboxylase3e-0964.3
NC_016629:3308329:3348954334895433502161263Desulfovibrio africanus str. Walvis Bay chromosome, completediaminopimelate decarboxylase4e-0963.9
NC_013665:849508:8517548517548530341281Methanocella paludicola SANAE, complete genomediaminopimelate decarboxylase3e-0963.9
NC_009637:438037:4559814559814572911311Methanococcus maripaludis C7 chromosome, complete genomediaminopimelate decarboxylase3e-0963.9
NC_014960:1697818:1717704171770417189991296Anaerolinea thermophila UNI-1, complete genomediaminopimelate decarboxylase6e-0963.2
NC_009135:330628:3510543510543523641311Methanococcus maripaludis C5, complete genomediaminopimelate decarboxylase1e-0862.4
NC_015581:128350:1478181478181490771260Thioalkalimicrobium cyclicum ALM1 chromosome, complete genomediaminopimelate decarboxylase2e-0861.6
NC_005791:1173000:1186534118653411878441311Methanococcus maripaludis S2, complete genomeDiaminopimelate decarboxylase2e-0861.2
NC_015847:1261276:1273909127390912752191311Methanococcus maripaludis XI chromosome, complete genomediaminopimelate decarboxylase3e-0860.8
NC_016940:995500:1018059101805910194561398Saprospira grandis str. Lewin chromosome, complete genomeOrn/DAP/Arg decarboxylase 24e-0860.5
NC_003919:3396136:3417751341775134203602610Xanthomonas axonopodis pv. citri str. 306, complete genomebifunctional aspartate kinase/diaminopimelate decarboxylase protein5e-0860.1
NC_009712:1008000:1028815102881510300081194Candidatus Methanoregula boonei 6A8, complete genomeOrn/DAP/Arg decarboxylase 21e-0758.9
NC_016605:132253:1543441543441556361293Pediococcus claussenii ATCC BAA-344 chromosome, complete genomediaminopimelate decarboxylase1e-0758.9
NC_009380:4184695:4184695418469541861071413Salinispora tropica CNB-440 chromosome, complete genomediaminopimelate decarboxylase1e-0758.9
NC_013222:432947:4366694366694381321464Robiginitalea biformata HTCC2501, complete genomearginine decarboxylase1e-0758.5
NC_016112:3103716:3103716310371631049511236Methylomicrobium alcaliphilum chromosome, complete genomeornithine/diaminopimelate PLP-dependent decarboxylase2e-0758.5
NC_010175:1531212:1536504153650415380061503Chloroflexus aurantiacus J-10-fl, complete genomeOrn/DAP/Arg decarboxylase 22e-0758.2
NC_009975:1374500:1374732137473213760421311Methanococcus maripaludis C6, complete genomediaminopimelate decarboxylase2e-0757.8
NC_008262:654000:6687356687356700301296Clostridium perfringens SM101, complete genomediaminopimelate decarboxylase3e-0757.4
NC_008261:676000:6904856904856917801296Clostridium perfringens ATCC 13124, complete genomediaminopimelate decarboxylase3e-0757.4
NC_002939:173833:1761591761591774121254Geobacter sulfurreducens PCA, complete genomediaminopimelate decarboxylase3e-0757.4
NC_015577:3589884:3588722358872235898941173Treponema azotonutricium ZAS-9 chromosome, complete genomedecarboxylase, pyridoxal-dependent family3e-0757.4
NC_003366:728859:7430707430707444701401Clostridium perfringens str. 13, complete genomediaminopimelate decarboxylase3e-0757.4
NC_003551:415803:4428174428174440341218Methanopyrus kandleri AV19, complete genomeDiaminopimelate decarboxylase4e-0757
NC_007514:1475323:1497068149706814983241257Chlorobium chlorochromatii CaD3, complete genomeDiaminopimelate decarboxylase4e-0757
NC_016751:2044379:2048690204869020498501161Marinitoga piezophila KA3 chromosome, complete genomediaminopimelate decarboxylase4e-0757
NC_017301:863500:8830108830108843411332Corynebacterium pseudotuberculosis C231 chromosome, completediaminopimelate decarboxylase6e-0756.6
NC_017303:863060:8832038832038845341332Corynebacterium pseudotuberculosis I19 chromosome, complete genomediaminopimelate decarboxylase6e-0756.6
NC_017305:863072:8832158832158845461332Corynebacterium pseudotuberculosis PAT10 chromosome, completediaminopimelate decarboxylase6e-0756.6
NC_017317:944218:9626509626509639811332Corynebacterium ulcerans 809 chromosome, complete genomediaminopimelate decarboxylase5e-0756.6
NC_008789:1669082:1704702170470217059371236Halorhodospira halophila SL1, complete genomeOrn/DAP/Arg decarboxylase 28e-0756.2
NC_016932:832748:8715048715048728351332Corynebacterium pseudotuberculosis 316 chromosome, complete genomediaminopimelate decarboxylase7e-0756.2
NC_017031:863093:8832338832338846571425Corynebacterium pseudotuberculosis P54B96 chromosome, completediaminopimelate decarboxylase6e-0756.2
NC_008312:3728329:3751594375159437530211428Trichodesmium erythraeum IMS101, complete genomediaminopimelate decarboxylase8e-0755.8
NC_007484:2222474:2243015224301522442471233Nitrosococcus oceani ATCC 19707, complete genomeOrn/DAP/Arg decarboxylase 21e-0655.8
NC_002937:1706000:1726001172600117272391239Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completediaminopimelate decarboxylase1e-0655.5
NC_008751:1736512:1741018174101817422561239Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomediaminopimelate decarboxylase1e-0655.5
NC_015683:947048:9654819654819668121332Corynebacterium ulcerans BR-AD22 chromosome, complete genomeDiaminopimelate decarboxylase2e-0655.1
NC_017300:863898:8832888832888846191332Corynebacterium pseudotuberculosis 1002 chromosome, completediaminopimelate decarboxylase4e-0653.5
NC_016781:844613:8833838833838847141332Corynebacterium pseudotuberculosis 3/99-5 chromosome, completediaminopimelate decarboxylase4e-0653.5
NC_014329:844622:8833928833928847231332Corynebacterium pseudotuberculosis FRC41 chromosome, completediaminopimelate decarboxylase4e-0653.5
NC_013939:212331:2158662158662171191254Deferribacter desulfuricans SSM1, complete genomediaminopimelate decarboxylase7e-0652.8