Pre_GI: BLASTN Hits

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Query: NC_017378:1175639 Helicobacter pylori Puno120 chromosome, complete genome

Start: 1175639, End: 1198839, Length: 23201

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_018643:673195*67319570659933405Alpha proteobacterium HIMB5 chromosome, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_018644:910000*91000093169821699Alpha proteobacterium HIMB59 chromosome, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_019771:2816732*2816732283646519734Anabaena cylindrica PCC 7122, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007413:1570000*1570000159209922100Anabaena variabilis ATCC 29413, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_009850:1862602*1862602190488342282Arcobacter butzleri RM4018, complete genome1e-23119BLASTN svgBLASTP svg
NC_020195:234392*23439225309918708Blattabacterium sp. (Blatta orientalis) str. Tarazona, complete7e-1383.8BLASTN svgBLASTP svg
NC_013418:397956*39795641944221487Blattabacterium sp. (Periplaneta americana) str. BPLAN, complete3e-0971.9BLASTN svgBLASTP svg
NC_002528:546500*54650056448017981Buchnera aphidicola str. APS (Acyrthosiphon pisum), complete7e-0763.9BLASTN svgBLASTP svg
NC_004061:540354*54035456467824325Buchnera aphidicola str. Sg (Schizaphis graminum), complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014117:2684631*2684631271225727627Burkholderia sp. CCGE1002 chromosome chromosome 1, complete2e-1075.8BLASTN svgBLASTP svg
NC_008599:1291300*1291300131526123962Campylobacter fetus subsp. fetus 82-40, complete genome5e-20107BLASTN svgBLASTP svg
NC_003912:1742370*1742370177273330364Campylobacter jejuni RM1221, complete genome1e-20109BLASTN svgBLASTP svg
NC_008787:1582110*1582110160769325584Campylobacter jejuni subsp. jejuni 81-176, complete genome1e-20109BLASTN svgBLASTP svg
NC_008787:437786*43778645759919814Campylobacter jejuni subsp. jejuni 81-176, complete genome5e-57230BLASTN svgBLASTP svg
NC_014802:1631483*1631483165971028228Campylobacter jejuni subsp. jejuni ICDCCJ07001 chromosome, complete1e-20109BLASTN svgBLASTP svg
NC_014802:441000*44100045999318994Campylobacter jejuni subsp. jejuni ICDCCJ07001 chromosome, complete5e-57230BLASTN svgBLASTP svg
NC_002163:1607360*1607360163467927320Campylobacter jejuni subsp. jejuni NCTC 11168, complete genome1e-20109BLASTN svgBLASTP svg
NC_012039:412837*41283745648543649Campylobacter lari RM2100, complete genome4e-36161BLASTN svgBLASTP svg
NC_016012:1380260*1380260140143821179Candidatus Arthromitus sp. SFB-rat-Yit, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014909:619407*61940765312133715Candidatus Blochmannia vafer str. BVAF chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_019814:125611*12561117345647846Candidatus Kinetoplastibacterium blastocrithidii (ex Strigomonas7e-0763.9BLASTN svgBLASTP svg
NC_020299:764526*76452681749952974Candidatus Kinetoplastibacterium oncopeltii TCC290E, complete5e-1177.8BLASTN svgBLASTP svg
NC_007205:1059684*1059684108783428151Candidatus Pelagibacter ubique HTCC1062, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_014934:701085*70108572182720743Cellulophaga algicola DSM 14237 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_015167:2415604*2415604244614330540Cellulophaga lytica DSM 7489 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_011026:1284966*1284966131731132346Chloroherpeton thalassium ATCC 35110, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_003030:3251941*3251941329013838198Clostridium acetobutylicum ATCC 824, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_015687:3252233*3252233329176539533Clostridium acetobutylicum DSM 1731 chromosome, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_018664:2357882*2357882238773229851Clostridium acidurici 9a chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014393:4482896*4482896452909946204Clostridium cellulovorans 743B chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_008593:196257*19625723516638910Clostridium novyi NT, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_020291:166500*16650019679930300Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome1e-0869.9BLASTN svgBLASTP svg
NC_011726:1605600*1605600162524019641Cyanothece sp. PCC 8801, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_007354:233991*23399125671722727Ehrlichia canis str. Jake, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_006831:250074*25007428496034887Ehrlichia ruminantium str. Gardel, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_005295:272708*27270830641333706Ehrlichia ruminantium str. Welgevonden, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_006832:252952*25295228640633455Ehrlichia ruminantium str. Welgevonden, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_009613:1505548*1505548152570320156Flavobacterium psychrophilum JIP02/86, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_015696:220798*22079825652935732Francisella sp. TX077308 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_009749:221311*22131125459933289Francisella tularensis subsp. holarctica FTA, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_008369:221382*22138225459933218Francisella tularensis subsp. holarctica OSU18, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_007880:221674*22167425368932016Francisella tularensis subsp. holarctica, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_010677:1621500*1621500165903737538Francisella tularensis subsp. mediasiatica FSC147, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_008601:246583*24658327938032798Francisella tularensis subsp. novicida U112, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008245:324926*32492635809933174Francisella tularensis subsp. tularensis FSC 198, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_006570:324974*32497435814633173Francisella tularensis subsp. tularensis Schu 4, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_019978:178277*17827721455436278Halobacteroides halobius DSM 5150, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_004917:340997*34099735926818272Helicobacter hepaticus ATCC 51449, complete genome9e-142511BLASTN svgBLASTP svg
NC_000921:10075191007519105809950581Helicobacter pylori J99, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_011126:219379*21937924579226414Hydrogenobaculum sp. Y04AAS1, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015496:2079156*2079156209909919944Krokinobacter diaphorus 4H-3-7-5 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_015638:429913*42991345655126639Lacinutrix sp. 5H-3-7-4 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_015520:2280643*2280643230563624994Mahella australiensis 50-1 BON chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014759:3572500*3572500360200929510Marivirga tractuosa DSM 4126 chromosome, complete genome2e-19105BLASTN svgBLASTP svg
NC_015945:708968*70896873426525298Muricauda ruestringensis DSM 13258 chromosome, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_011896:2240990*2240990227968138692Mycobacterium leprae Br4923, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_002677:2241065*2241065227975638692Mycobacterium leprae TN, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_009662:222964*22296426489641933Nitratiruptor sp. SB155-2, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_015731:2950874*2950874299427243399Nitrosomonas sp. Is79A3 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_003272:5184000*5184000520609922100Nostoc sp. PCC 7120, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_005303:272915*27291531815445240Onion yellows phytoplasma OY-M, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010003:795355*79535584173746383Petrotoga mobilis SJ95, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014738:1507641*1507641153018722547Riemerella anatipestifer ATCC 11845 = DSM 15868 chromosome,1e-0869.9BLASTN svgBLASTP svg
NC_002978:4973*49733067725705Wolbachia endosymbiont of Drosophila melanogaster, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_006833:409599*40959944663937041Wolbachia endosymbiont strain TRS of Brugia malayi, complete1e-1799.6BLASTN svgBLASTP svg
NC_012416:4973*49733030125329Wolbachia sp. wRi, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_005090:1033746*1033746106167527930Wolinella succinogenes DSM 1740, complete genome3e-21111BLASTN svgBLASTP svg