Pre_GI: BLASTP Hits

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Query: NC_017378:1489818:1490298 Helicobacter pylori Puno120 chromosome, complete genome

Start: 1490298, End: 1492889, Length: 2592

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018939:1583653:1584470158447015871032634Helicobacter pylori 26695 chromosome, complete genomeiron-regulated outer membrane protein01636
NC_000915:1583967:1584447158444715870802634Helicobacter pylori 26695, complete genomeiron-regulated outer membrane protein (frpB)01636
NC_017371:1601452:1601452160145216040912640Helicobacter pylori Gambia94/24 chromosome, complete genomeiron-regulated outer membrane protein01632
NC_017367:1505780:1505780150578015083712592Helicobacter pylori F57, complete genomeputative IRON-regulated outer membrane protein01629
NC_009715:399159:4024854024854044251941Campylobacter curvus 525.92 chromosome, complete genomeTonB-dependent heme/hemoglobin receptor2e-1791.7
NC_016513:16721:2621026210281621953Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeouter membrane protein 644e-1273.9
NC_013416:1783349:1800641180064118025931953Aggregatibacter actinomycetemcomitans D11S-1, complete genomeouter membrane protein 645e-1273.9
NC_014752:1331447:1331447133144713334922046Neisseria lactamica ST-640, complete genomeTonB dependent receptor2e-1171.6
NC_017378:1489818:148981814898181490144327Helicobacter pylori Puno120 chromosome, complete genomeFrpB-like protein1e-0656.2