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Query: NC_017376:57500:92775 Helicobacter pylori SNT49 chromosome, complete genome

Start: 92775, End: 92903, Length: 129

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017379:1035464:105212910521291052257129Helicobacter pylori Puno135 chromosome, complete genomehypothetical protein7e-1682.8
NC_017358:220900:235562235562235690129Helicobacter pylori Cuz20 chromosome, complete genomehypothetical protein7e-1682.8
NC_010698:870312:906004906004906132129Helicobacter pylori Shi470, complete genomehypothetical protein7e-1682.8
NC_017361:930280:965922965922966050129Helicobacter pylori SouthAfrica7 chromosome, complete genomehypothetical protein2e-1477.8
NC_017367:278916:292035292035292166132Helicobacter pylori F57, complete genomehypothetical protein6e-1476.3