Pre_GI: BLASTP Hits

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Query: NC_017376:57500:84137 Helicobacter pylori SNT49 chromosome, complete genome

Start: 84137, End: 85864, Length: 1728

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017358:220900:2426052426052443321728Helicobacter pylori Cuz20 chromosome, complete genomeconjugal transfer protein (traG)01138
NC_014555:1526775:1552006155200615537541749Helicobacter pylori PeCan4 chromosome, complete genomeconjugal transfer protein (traG)01138
NC_017361:930280:9572629572629590071746Helicobacter pylori SouthAfrica7 chromosome, complete genomeVirD4 coupling protein01137
NC_017379:1035464:1043473104347310452001728Helicobacter pylori Puno135 chromosome, complete genomeconjugal transfer protein (traG)01136
NC_010698:870312:8973628973628990891728Helicobacter pylori Shi470, complete genomeconjugal transfer protein (traG)01136
NC_011498:448000:4761054761054778321728Helicobacter pylori P12, complete genomeVirD4 coupling protein01134
NC_017371:1030148:1043680104368010454281749Helicobacter pylori Gambia94/24 chromosome, complete genomeVirD4 coupling protein01132
NC_011333:1040192:1060476106047610622031728Helicobacter pylori G27 chromosome, complete genomecag island DNA transfer protein01127
NC_017357:973392:9884039884039901451743Helicobacter pylori 908 chromosome, complete genomehypothetical protein01113
NC_017374:974279:9892909892909910321743Helicobacter pylori 2017 chromosome, complete genomeputative conjugal transfer protein01113
NC_017381:982216:9972459972459989871743Helicobacter pylori 2018 chromosome, complete genomeconjugal transfer protein01113
NC_017367:278916:2990802990803008371758Helicobacter pylori F57, complete genomeconjugal transfer protein01095
NC_017361:1528239:1543901154390115460332133Helicobacter pylori SouthAfrica7 chromosome, complete genomeconjugal transfer protein (traG)0727
NC_017372:748097:7818747818747841262253Helicobacter pylori India7 chromosome, complete genomeVirD4 coupling protein5e-154545
NC_014256:485969:5108335108335129622130Helicobacter pylori B8 chromosome, complete genometype IV secretion system protein VirD48e-143507
NC_017063:834674:8517278517278539702244Helicobacter pylori ELS37 chromosome, complete genomeVirD4 coupling protein8e-143507
NC_017371:1470582:1505340150534015072441905Helicobacter pylori Gambia94/24 chromosome, complete genomeVirD4 coupling protein2e-142506
NC_011498:1391788:1408783140878314110262244Helicobacter pylori P12, complete genomeVirD4 coupling protein3e-142505
NC_005090:1033746:1045289104528910471001812Wolinella succinogenes DSM 1740, complete genomeCONJUGAL TRANSFER PROTEIN (TRAG)3e-93342
NC_009719:1972545:1984249198424919863122064Parvibaculum lavamentivorans DS-1 chromosome, complete genomeconjugal transfer coupling protein TraG4e-25116
NC_008781:2655071:2665222266522226672071986Polaromonas naphthalenivorans CJ2, complete genomeTRAG family protein7e-25115
NC_015942:1947258:1965686196568619681812496Acidithiobacillus ferrivorans SS3 chromosome, complete genomeTRAG family protein9e-24112
NC_009714:113975:1507621507621527381977Campylobacter hominis ATCC BAA-381, complete genomecmgd43e-22107
NC_015942:722980:7396097396097418762268Acidithiobacillus ferrivorans SS3 chromosome, complete genomeTRAG family protein1e-21105
NC_011365:1135750:1154211115421111561931983Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeconjugal transfer coupling protein TraG8e-21102
NC_009254:365812:3745933745933763111719Burkholderia vietnamiensis G4 chromosome 3, complete sequenceTRAG family protein1e-20102
NC_017355:493237:4958944958944981402247Helicobacter pylori v225d chromosome, complete genomecag pathogenicity island protein (cagb)2e-1894.7
NC_007925:3933765:3946807394680739488011995Rhodopseudomonas palustris BisB18, complete genomeTRAG protein2e-1894.4
NC_003295:2787371:2792029279202927940562028Ralstonia solanacearum GMI1000, complete genomePROBABLE PLASMID CONJUGATION TRAG TRANSMEMBRANE PROTEIN4e-1893.6
NC_017359:813500:8271658271658294112247Helicobacter pylori Sat464 chromosome, complete genomecag pathogenicity island protein (cag beta, cag5)4e-1893.2
NC_017358:563336:5654325654325676782247Helicobacter pylori Cuz20 chromosome, complete genomecag pathogenicity island protein (cag beta, cag5)4e-1893.2
NC_010698:819912:8399718399718422172247Helicobacter pylori Shi470, complete genomecag pathogenicity island protein 54e-1893.2
NC_010002:2933909:2969111296911129711202010Delftia acidovorans SPH-1, complete genomeTRAG family protein6e-1892.8
NC_014910:242845:2432882432882452912004Alicycliphilus denitrificans BC chromosome, complete genometrag family protein6e-1892.8
NC_014256:683384:6972886972886995342247Helicobacter pylori B8 chromosome, complete genomecag pathogenicity island protein beta6e-1892.8
NC_000915:547783:5502175502175524632247Helicobacter pylori 26695, complete genomecag pathogenicity island protein (cag5)1e-1792
NC_018939:547793:5502275502275524732247Helicobacter pylori 26695 chromosome, complete genomecag pathogenicity island protein Beta1e-1792
NC_010515:1124298:1127230112723011289421713Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceTRAG family protein1e-1792
NC_014910:2930860:2935496293549629375022007Alicycliphilus denitrificans BC chromosome, complete genometrag family protein1e-1792
NC_007643:955362:9676959676959688191125Rhodospirillum rubrum ATCC 11170, complete genome1e-1792
NC_017362:506950:5092785092785115242247Helicobacter pylori Lithuania75 chromosome, complete genomecag pathogenicity island protein 51e-1791.7
NC_017376:538000:5418255418255440712247Helicobacter pylori SNT49 chromosome, complete genomeCAG pathogenicity island protein 52e-1791.7
NC_015556:2265940:2270422227042222724131992Pseudomonas fulva 12-X chromosome, complete genomeTRAG family protein2e-1791.3
NC_014100:2782000:2795208279520827971601953Caulobacter segnis ATCC 21756 chromosome, complete genomeTRAG family protein2e-1791.3
NC_011498:553525:5559635559635582092247Helicobacter pylori P12, complete genomecag pathogenicity island protein Beta2e-1791.3
NC_008086:513407:5162415162415184872247Helicobacter pylori HPAG1, complete genomecag pathogenicity island protein 52e-1790.9
NC_014560:518582:5325215325215347672247Helicobacter pylori SJM180 chromosome, complete genomecag island protein, DNA transfer protein3e-1790.5
NC_008061:2106848:2109780210978021114531674Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceTRAG protein3e-1790.5
NC_008577:1489643:1491078149107814930751998Shewanella sp. ANA-3 chromosome 1, complete sequenceTRAG family protein3e-1790.5
NC_017379:505350:5077785077785100242247Helicobacter pylori Puno135 chromosome, complete genomeCAG pathogenicity island protein 53e-1790.5
NC_011059:670345:6749096749096770952187Prosthecochloris aestuarii DSM 271, complete genome7e-1789.4
NC_011992:3752867:3757497375749737595002004Acidovorax ebreus TPSY, complete genomeTRAG family protein8e-1789
NC_014414:2540189:2553515255351525553531839Parvularcula bermudensis HTCC2503 chromosome, complete genomeconjugal transfer protein traG1e-1688.6
NC_017357:495213:5018985018985041442247Helicobacter pylori 908 chromosome, complete genometype IV secretion protein2e-1688.2
NC_017381:500699:5031405031405053862247Helicobacter pylori 2018 chromosome, complete genomeType IV secretion system protein2e-1688.2
NC_011333:514464:5167935167935190392247Helicobacter pylori G27 chromosome, complete genomecag pathogenicity island protein 51e-1688.2
NC_017371:530673:5331165331165353622247Helicobacter pylori Gambia94/24 chromosome, complete genomeCAG pathogenicity island protein 51e-1688.2
NC_017372:855384:8690948690948713402247Helicobacter pylori India7 chromosome, complete genomecag pathogenicity island protein Beta1e-1688.2
NC_010943:1332243:1334372133437213363722001Stenotrophomonas maltophilia K279a, complete genomeputative conjugal transfer protein2e-1687.8
NC_000921:511642:5140885140885163342247Helicobacter pylori J99, complete genomecag island protein, DNA transfer protein2e-1687.8
NC_015381:2859000:2881633288163328836362004Burkholderia gladioli BSR3 chromosome 1, complete sequenceconjugal transfer protein TraG2e-1687.8
NC_017374:498588:5010295010295032752247Helicobacter pylori 2017 chromosome, complete genomeType IV secretion system protein2e-1687.8
NC_014555:502151:5042555042555065012247Helicobacter pylori PeCan4 chromosome, complete genomecag pathogenicity island protein Beta3e-1687
NC_018691:3082000:3095819309581930978222004Alcanivorax dieselolei B5 chromosome, complete genomeTraG-like protein3e-1687
NC_012982:711122:7139907139907159751986Hirschia baltica ATCC 49814, complete genomeTRAG family protein6e-1686.3
NC_005956:1521736:1523533152353315254521920Bartonella henselae str. Houston-1, complete genomeConjugal transfer protein trag1e-1585.5
NC_014834:959986:9681419681419701261986Rhodopseudomonas palustris DX-1 chromosome, complete genomeTRAG family protein3e-1584
NC_010338:2443765:2450624245062424523451722Caulobacter sp. K31, complete genomeTRAG family protein3e-1584
NC_017249:18493:3729937299392811983Bradyrhizobium japonicum USDA 6, complete genomeconjugal transfer protein4e-1583.6
NC_004463:18497:3730537305393322028Bradyrhizobium japonicum USDA 110, complete genomeconjugal transfer protein4e-1583.6
NC_010125:2998619:3001295300129530033162022Gluconacetobacter diazotrophicus PAl 5, complete genomeputative conjugal transfer protein traG1e-1482.4
NC_020301:1449616:1454783145478314567021920Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genomeconjugal transfer protein TraG/VirD43e-1480.9
NC_006371:1743982:1769029176902917708911863Photobacterium profundum SS9 chromosome 2, complete sequencehypothetical protein TraG4e-1480.5
NC_009720:4406991:4434900443490044368791980Xanthobacter autotrophicus Py2, complete genomeconjugal transfer coupling protein TraG3e-1480.5
NC_010161:1811000:1811015181101518129311917Bartonella tribocorum CIP 105476, complete genomeVirD4 protein9e-1479
NC_005955:1259393:1261086126108612630051920Bartonella quintana str. Toulouse, complete genomeConjugal transfer protein traG1e-1378.6
NC_015850:169180:1721031721031744572355Acidithiobacillus caldus SM-1 chromosome, complete genomeTRAG family protein4e-1377
NC_013422:1755875:1779991177999117824622472Halothiobacillus neapolitanus c2, complete genomeTRAG family protein5e-1376.6
NC_015437:697051:7214467214467238392394Selenomonas sputigena ATCC 35185 chromosome, complete genomeTRAG family protein1e-1275.1
NC_012846:1679184:1680973168097316828891917Bartonella grahamii as4aup, complete genomeconjugal transfer protein TraG/VirD41e-1275.1
NC_011985:3869998:3889956388995638918691914Agrobacterium radiobacter K84 chromosome 1, complete genomeTi-type conjugative transfer system protein TraG3e-1273.6
NC_015850:1220444:1220444122044412230202577Acidithiobacillus caldus SM-1 chromosome, complete genomeTraG5e-1273.2
NC_004116:1276791:1304689130468913065061818Streptococcus agalactiae 2603V/R, complete genome9e-1272.4
NC_011987:53760:5376053760561232364Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequenceTRAG protein1e-1172.4
NC_010170:4800000:4876733487673348787422010Bordetella petrii, complete genomeconjugal transfer protein TraG3e-1170.9
NC_007797:1451804:1460198146019814624202223Anaplasma phagocytophilum HZ, complete genometype IV secretion system protein VirD43e-1170.5
NC_006831:4500:1217012170145722403Ehrlichia ruminantium str. Gardel, complete genomePutative virD4 protein8e-1169.3
NC_005295:21995:3116531165335702406Ehrlichia ruminantium str. Welgevonden, complete genometype IV secretion system protein VirD48e-1169.3
NC_015221:12389:3188831888337321845Nitrosomonas sp. AL212 plasmid pNAL21202, complete sequenceTRAG family protein7e-1169.3
NC_003919:3060484:3088230308823030899031674Xanthomonas axonopodis pv. citri str. 306, complete genomeVirD4 protein1e-1068.9
NC_007086:2887875:2924209292420929259061698Xanthomonas campestris pv. campestris str. 8004, complete genomeputative NTPase VagA1e-1068.9
NC_002978:4973:82698269102151947Wolbachia endosymbiont of Drosophila melanogaster, complete genometype IV secretion system protein VirD41e-1068.9
NC_015675:6342164:6345446634544663471911746Mesorhizobium opportunistum WSM2075 chromosome, complete genomeTRAG family protein1e-1068.9
NC_014923:5787493:5790775579077557925201746Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeTRAG family protein1e-1068.9
NC_019973:5716453:5719735571973557214801746Mesorhizobium australicum WSM2073, complete genometype IV secretory pathway, VirD4 component1e-1068.9
NC_010995:1417329:1440148144014814418331686Cellvibrio japonicus Ueda107, complete genomeTraG/TraD family9e-1168.9
NC_017271:2935643:2973196297319629748631668Xanthomonas campestris pv. raphani 756C chromosome, completeVirD4 protein1e-1068.6
NC_007508:3183631:3196116319611631977891674Xanthomonas campestris pv. vesicatoria str. 85-10, complete genometype IV secretion system protein VirD41e-1068.6
NC_016010:1822212:1863335186333518650321698Xanthomonas axonopodis pv. citrumelo F1 chromosome, completetype IV secretion system protein VirD41e-1068.6
NC_017271:4058642:4069267406926740709701704Xanthomonas campestris pv. raphani 756C chromosome, completetype IV secretion system protein VirD41e-1068.6
NC_017271:149856:1689951689951705751581Xanthomonas campestris pv. raphani 756C chromosome, completetype IV secretion system protein VirD41e-1068.6
NC_003902:2933121:2952459295245929541321674Xanthomonas campestris pv. campestris str. ATCC 33913, completeVirD4 protein1e-1068.2
NC_007086:1936505:1956087195608719577601674Xanthomonas campestris pv. campestris str. 8004, complete genomeVirD4 protein1e-1068.2
NC_010688:1908012:1928821192882119304941674Xanthomonas campestris pv. campestris, complete genometype IV secretion system coupling protein VirD41e-1068.2
NC_016929:825413:8369198369198386941776Rickettsia canadensis str. CA410 chromosome, complete genometype IV secretion system protein VirB82e-1067.8
NC_009879:835227:8468038468038485781776Rickettsia canadensis str. McKiel, complete genomehypothetical protein2e-1067.8
NC_011071:2733438:2754506275450627561851680Stenotrophomonas maltophilia R551-3, complete genomeTRAG family protein2e-1067.8
NC_012416:4973:83058305103232019Wolbachia sp. wRi, complete genometype IV secretion system protein VirD43e-1067.4
NC_010943:3034366:3052785305278530544641680Stenotrophomonas maltophilia K279a, complete genomeputative transmembrane conjugative DNA transfer protein4e-1067
NC_014816:1592799:1596795159679515984711677Asticcacaulis excentricus CB 48 chromosome 1, complete sequencetrag family protein5e-1066.6
NC_015947:2752450:2772897277289727745761680Burkholderia sp. JV3 chromosome, complete genomeTRAG family protein6e-1066.2
NC_015603:1:1070110701122211521Lactobacillus kefiranofaciens ZW3 plasmid pWW2, complete sequenceprotein Trs8e-1065.9
NC_016814:18000:3264032640347392100Sinorhizobium fredii HH103 plasmid pSfHH103c complete sequenceProtein virD48e-1065.9
NC_014816:545441:5663965663965680721677Asticcacaulis excentricus CB 48 chromosome 1, complete sequencetrag family protein1e-0965.5
NC_007643:955362:968844968844969686843Rhodospirillum rubrum ATCC 11170, complete genome1e-0965.5
NC_017366:535188:5374575374575397032247Helicobacter pylori F32, complete genomecag pathogenicity island protein2e-0965.1
NC_010510:339879:3603633603633623541992Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeTRAG family protein1e-0965.1
NC_017249:1476500:1492665149266514943411677Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein1e-0965.1
NC_015259:734795:7358277358277374221596Polymorphum gilvum SL003B-26A1 chromosome, complete genomePlasmid transfer factor, traG2e-0964.7
NC_004842:1132441:1154957115495711573772421Anaplasma marginale str. St. Maries, complete genomeVirD4 protein2e-0964.7
NC_012026:1135041:1159067115906711614872421Anaplasma marginale str. Florida, complete genomeVirD4 protein (virD4)2e-0964.7
NC_017354:848500:8627168627168649622247Helicobacter pylori 52 chromosome, complete genomecag pathogenicity island protein 52e-0964.7
NC_017360:1052473:1066497106649710687432247Helicobacter pylori 35A chromosome, complete genomecag pathogenicity island protein2e-0964.7
NC_017368:852490:8662018662018684472247Helicobacter pylori F16, complete genomecag pathogenicity island protein2e-0964.7
NC_017365:848500:8627828627828650282247Helicobacter pylori F30, complete genomecag pathogenicity island protein2e-0964.7
NC_017367:562918:5651905651905674362247Helicobacter pylori F57, complete genomecag pathogenicity island protein2e-0964.7
NC_017375:872478:8861958861958884412247Helicobacter pylori 83 chromosome, complete genomecag pathogenicity island protein2e-0964.7
NC_013532:85371:8641786417888432427Anaplasma centrale str. Israel, complete genometype IV secretion system protein VirD42e-0964.7
NC_009787:17344:4718471869492232Escherichia coli E24377A plasmid pETEC_35, complete sequencetype IV conjugative transfer system coupling protein TraD2e-0964.3
NC_017063:800156:8030308030308052762247Helicobacter pylori ELS37 chromosome, complete genomeCAG pathogenicity island protein 54e-0963.5
NC_013722:3081459:3101807310180731035011695Xanthomonas albilineans, complete genomeputative type iv secretory pathway, conjugal transfer protein5e-0963.2
NC_020453:3950838:3988683398868339904941812Agromonas oligotrophica S58 DNA, complete genomeputative type IV secretory pathway VirD4 components2e-0861.2
NC_015730:1918000:1933050193305019349901941Roseobacter litoralis Och 149 chromosome, complete genomeTraG family conjugal transfer-like protein3e-0860.8
NC_013722:2810721:2835935283593528376291695Xanthomonas albilineans, complete genomeputative type iv secretory pathway, conjugal transfer protein3e-0860.5
NC_003902:4111283:4123510412351041247211212Xanthomonas campestris pv. campestris str. ATCC 33913, completetruncated NTPase6e-0859.7
NC_007798:652317:6585716585716604961926Neorickettsia sennetsu str. Miyayama, complete genometype IV secretion system protein VirD47e-0859.3
NC_015259:673662:6761806761806777571578Polymorphum gilvum SL003B-26A1 chromosome, complete genomePlasmid transfer factor, traG2e-0758.2
NC_015259:485015:5308405308405323061467Polymorphum gilvum SL003B-26A1 chromosome, complete genomePlasmid transfer factor, traG2e-0757.8
NC_004368:1160535:1173758117375811758182061Streptococcus agalactiae NEM316, complete genomehypothetical protein3e-0757.4
NC_008322:1186000:1186944118694411889171974Shewanella sp. MR-7, complete genomehypothetical protein4e-0757
NC_014819:25765:4626046260488752616Asticcacaulis excentricus CB 48 plasmid pASTEX02, completehypothetical protein6e-0756.2
NC_003902:4111283:412570441257044126417714Xanthomonas campestris pv. campestris str. ATCC 33913, completeNTPase8e-0755.8
NC_012034:2623252:2641160264116026430371878Anaerocellum thermophilum DSM 6725, complete genomeTRAG family protein1e-0655.5
NC_004757:267165:2820272820272836641638Nitrosomonas europaea ATCC 19718, complete genomeTRAG protein1e-0655.5
NC_016582:5987039:6000038600003860017711734Streptomyces bingchenggensis BCW-1 chromosome, complete genomeType IV secretory pathway VirD4 protein-like protein1e-0655.5
NC_007404:1776147:1776147177614717785012355Thiobacillus denitrificans ATCC 25259, complete genomeputative type IV secretory pathway VirD4 components2e-0654.7
NC_014652:379833:3913543913543932311878Caldicellulosiruptor hydrothermalis 108 chromosome, completetrag family protein2e-0654.7
NC_016846:24500:5201252012542912280Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS2,conjugal transfer protein TraD2e-0654.7
NC_009720:251703:2517032517032531061404Xanthobacter autotrophicus Py2, complete genomeType IV secretory pathway VirD4 protein-like protein2e-0654.3
NC_015385:1875671:1881537188153718836842148Treponema succinifaciens DSM 2489 chromosome, complete genomeTRAG family protein3e-0654.3
NC_011891:1225000:1245654124565412471831530Anaeromyxobacter dehalogenans 2CP-1, complete genometype IV secretion system protein VirD43e-0653.9
NC_014624:1768226:1806146180614618082632118Eubacterium limosum KIST612 chromosome, complete genomeTraG/TraD family protein6e-0653.1
NC_007607:87000:9356593565950791515Shigella dysenteriae Sd197 plasmid pSD1_197, complete sequencehypothetical protein8e-0652.8
NC_010514:6000:93049304110431740Methylobacterium radiotolerans JCM 2831 plasmid pMRAD03, completeTRAG family protein8e-0652.4