Pre_GI: BLASTP Hits

Some Help

Query: NC_017376:538000:541825 Helicobacter pylori SNT49 chromosome, complete genome

Start: 541825, End: 544071, Length: 2247

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017362:506950:5092785092785115242247Helicobacter pylori Lithuania75 chromosome, complete genomecag pathogenicity island protein 501530
NC_011498:553525:5559635559635582092247Helicobacter pylori P12, complete genomecag pathogenicity island protein Beta01528
NC_017372:855384:8690948690948713402247Helicobacter pylori India7 chromosome, complete genomecag pathogenicity island protein Beta01527
NC_014555:502151:5042555042555065012247Helicobacter pylori PeCan4 chromosome, complete genomecag pathogenicity island protein Beta01526
NC_014256:683384:6972886972886995342247Helicobacter pylori B8 chromosome, complete genomecag pathogenicity island protein beta01526
NC_008086:513407:5162415162415184872247Helicobacter pylori HPAG1, complete genomecag pathogenicity island protein 501526
NC_017354:848500:8627168627168649622247Helicobacter pylori 52 chromosome, complete genomecag pathogenicity island protein 501524
NC_000921:511642:5140885140885163342247Helicobacter pylori J99, complete genomecag island protein, DNA transfer protein01524
NC_017379:505350:5077785077785100242247Helicobacter pylori Puno135 chromosome, complete genomeCAG pathogenicity island protein 501523
NC_010698:819912:8399718399718422172247Helicobacter pylori Shi470, complete genomecag pathogenicity island protein 501523
NC_017358:563336:5654325654325676782247Helicobacter pylori Cuz20 chromosome, complete genomecag pathogenicity island protein (cag beta, cag5)01523
NC_017355:493237:4958944958944981402247Helicobacter pylori v225d chromosome, complete genomecag pathogenicity island protein (cagb)01522
NC_017371:530673:5331165331165353622247Helicobacter pylori Gambia94/24 chromosome, complete genomeCAG pathogenicity island protein 501522
NC_017360:1052473:1066497106649710687432247Helicobacter pylori 35A chromosome, complete genomecag pathogenicity island protein01521
NC_017381:500699:5031405031405053862247Helicobacter pylori 2018 chromosome, complete genomeType IV secretion system protein01521
NC_017359:813500:8271658271658294112247Helicobacter pylori Sat464 chromosome, complete genomecag pathogenicity island protein (cag beta, cag5)01521
NC_017357:495213:5018985018985041442247Helicobacter pylori 908 chromosome, complete genometype IV secretion protein01521
NC_017365:848500:8627828627828650282247Helicobacter pylori F30, complete genomecag pathogenicity island protein01520
NC_017368:852490:8662018662018684472247Helicobacter pylori F16, complete genomecag pathogenicity island protein01520
NC_017366:535188:5374575374575397032247Helicobacter pylori F32, complete genomecag pathogenicity island protein01519
NC_018939:547793:5502275502275524732247Helicobacter pylori 26695 chromosome, complete genomecag pathogenicity island protein Beta01518
NC_000915:547783:5502175502175524632247Helicobacter pylori 26695, complete genomecag pathogenicity island protein (cag5)01518
NC_017063:800156:8030308030308052762247Helicobacter pylori ELS37 chromosome, complete genomeCAG pathogenicity island protein 501517
NC_017374:498588:5010295010295032752247Helicobacter pylori 2017 chromosome, complete genomeType IV secretion system protein01517
NC_017367:562918:5651905651905674362247Helicobacter pylori F57, complete genomecag pathogenicity island protein01516
NC_017375:872478:8861958861958884412247Helicobacter pylori 83 chromosome, complete genomecag pathogenicity island protein01516
NC_011333:514464:5167935167935190392247Helicobacter pylori G27 chromosome, complete genomecag pathogenicity island protein 501515
NC_014560:518582:5325215325215347672247Helicobacter pylori SJM180 chromosome, complete genomecag island protein, DNA transfer protein01512
NC_009714:113975:1507621507621527381977Campylobacter hominis ATCC BAA-381, complete genomecmgd46e-68259
NC_017271:149856:1689951689951705751581Xanthomonas campestris pv. raphani 756C chromosome, completetype IV secretion system protein VirD42e-44181
NC_007086:2887875:2924209292420929259061698Xanthomonas campestris pv. campestris str. 8004, complete genomeputative NTPase VagA3e-44180
NC_016010:1822212:1863335186333518650321698Xanthomonas axonopodis pv. citrumelo F1 chromosome, completetype IV secretion system protein VirD43e-44180
NC_007508:3183631:3196116319611631977891674Xanthomonas campestris pv. vesicatoria str. 85-10, complete genometype IV secretion system protein VirD43e-44180
NC_017271:2935643:2973196297319629748631668Xanthomonas campestris pv. raphani 756C chromosome, completeVirD4 protein4e-44180
NC_010688:1908012:1928821192882119304941674Xanthomonas campestris pv. campestris, complete genometype IV secretion system coupling protein VirD48e-44179
NC_003919:3060484:3088230308823030899031674Xanthomonas axonopodis pv. citri str. 306, complete genomeVirD4 protein7e-44179
NC_017271:4058642:4069267406926740709701704Xanthomonas campestris pv. raphani 756C chromosome, completetype IV secretion system protein VirD41e-43178
NC_003902:2933121:2952459295245929541321674Xanthomonas campestris pv. campestris str. ATCC 33913, completeVirD4 protein1e-43178
NC_007086:1936505:1956087195608719577601674Xanthomonas campestris pv. campestris str. 8004, complete genomeVirD4 protein1e-43178
NC_010943:3034366:3052785305278530544641680Stenotrophomonas maltophilia K279a, complete genomeputative transmembrane conjugative DNA transfer protein3e-43177
NC_015947:2752450:2772897277289727745761680Burkholderia sp. JV3 chromosome, complete genomeTRAG family protein9e-43176
NC_011071:2733438:2754506275450627561851680Stenotrophomonas maltophilia R551-3, complete genomeTRAG family protein4e-42173
NC_013722:2810721:2835935283593528376291695Xanthomonas albilineans, complete genomeputative type iv secretory pathway, conjugal transfer protein4e-40167
NC_013722:3081459:3101807310180731035011695Xanthomonas albilineans, complete genomeputative type iv secretory pathway, conjugal transfer protein1e-39165
NC_010515:1124298:1127230112723011289421713Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceTRAG family protein2e-37157
NC_008061:2106848:2109780210978021114531674Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceTRAG protein9e-37155
NC_009254:365812:3745933745933763111719Burkholderia vietnamiensis G4 chromosome 3, complete sequenceTRAG family protein5e-36153
NC_012416:4973:83058305103232019Wolbachia sp. wRi, complete genometype IV secretion system protein VirD45e-30133
NC_007797:1451804:1460198146019814624202223Anaplasma phagocytophilum HZ, complete genometype IV secretion system protein VirD45e-30133
NC_002978:4973:82698269102151947Wolbachia endosymbiont of Drosophila melanogaster, complete genometype IV secretion system protein VirD46e-30133
NC_004842:1132441:1154957115495711573772421Anaplasma marginale str. St. Maries, complete genomeVirD4 protein2e-28128
NC_012026:1135041:1159067115906711614872421Anaplasma marginale str. Florida, complete genomeVirD4 protein (virD4)2e-28128
NC_008781:2655071:2665222266522226672071986Polaromonas naphthalenivorans CJ2, complete genomeTRAG family protein2e-28128
NC_013532:85371:8641786417888432427Anaplasma centrale str. Israel, complete genometype IV secretion system protein VirD42e-28127
NC_006831:4500:1217012170145722403Ehrlichia ruminantium str. Gardel, complete genomePutative virD4 protein5e-28126
NC_005295:21995:3116531165335702406Ehrlichia ruminantium str. Welgevonden, complete genometype IV secretion system protein VirD45e-28126
NC_016929:825413:8369198369198386941776Rickettsia canadensis str. CA410 chromosome, complete genometype IV secretion system protein VirB81e-26122
NC_009879:835227:8468038468038485781776Rickettsia canadensis str. McKiel, complete genomehypothetical protein1e-26122
NC_007798:652317:6585716585716604961926Neorickettsia sennetsu str. Miyayama, complete genometype IV secretion system protein VirD41e-26122
NC_015221:12389:3188831888337321845Nitrosomonas sp. AL212 plasmid pNAL21202, complete sequenceTRAG family protein1e-24115
NC_003902:4111283:4123510412351041247211212Xanthomonas campestris pv. campestris str. ATCC 33913, completetruncated NTPase4e-23110
NC_015385:1875671:1881537188153718836842148Treponema succinifaciens DSM 2489 chromosome, complete genomeTRAG family protein4e-21103
NC_015437:697051:7214467214467238392394Selenomonas sputigena ATCC 35185 chromosome, complete genomeTRAG family protein1e-20102
NC_016814:18000:3264032640347392100Sinorhizobium fredii HH103 plasmid pSfHH103c complete sequenceProtein virD43e-1997.4
NC_011987:53760:5376053760561232364Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequenceTRAG protein9e-1996.3
NC_017376:57500:8413784137858641728Helicobacter pylori SNT49 chromosome, complete genomeconjugal transfer protein (traG)2e-1791.7
NC_015259:3902136:3905033390503339071922160Polymorphum gilvum SL003B-26A1 chromosome, complete genomeTraG/TraD family protein2e-1791.7
NC_017358:220900:2426052426052443321728Helicobacter pylori Cuz20 chromosome, complete genomeconjugal transfer protein (traG)1e-1689.4
NC_010698:870312:8973628973628990891728Helicobacter pylori Shi470, complete genomeconjugal transfer protein (traG)1e-1689
NC_011333:1040192:1060476106047610622031728Helicobacter pylori G27 chromosome, complete genomecag island DNA transfer protein2e-1688.6
NC_017379:1035464:1043473104347310452001728Helicobacter pylori Puno135 chromosome, complete genomeconjugal transfer protein (traG)1e-1688.6
NC_005090:1033746:1045289104528910471001812Wolinella succinogenes DSM 1740, complete genomeCONJUGAL TRANSFER PROTEIN (TRAG)6e-1686.7
NC_017249:1476500:1492665149266514943411677Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein6e-1686.7
NC_014555:1526775:1552006155200615537541749Helicobacter pylori PeCan4 chromosome, complete genomeconjugal transfer protein (traG)7e-1686.3
NC_014414:2540189:2553515255351525553531839Parvularcula bermudensis HTCC2503 chromosome, complete genomeconjugal transfer protein traG1e-1585.5
NC_006371:1743982:1769029176902917708911863Photobacterium profundum SS9 chromosome 2, complete sequencehypothetical protein TraG3e-1584.3
NC_015850:1220444:1220444122044412230202577Acidithiobacillus caldus SM-1 chromosome, complete genomeTraG8e-1582.8
NC_010161:1811000:1811015181101518129311917Bartonella tribocorum CIP 105476, complete genomeVirD4 protein2e-1482
NC_003902:4111283:412570441257044126417714Xanthomonas campestris pv. campestris str. ATCC 33913, completeNTPase3e-1480.9
NC_020301:1449616:1454783145478314567021920Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genomeconjugal transfer protein TraG/VirD45e-1480.1
NC_005955:1259393:1261086126108612630051920Bartonella quintana str. Toulouse, complete genomeConjugal transfer protein traG8e-1479.7
NC_005956:1521736:1523533152353315254521920Bartonella henselae str. Houston-1, complete genomeConjugal transfer protein trag1e-1379
NC_019973:5716453:5719735571973557214801746Mesorhizobium australicum WSM2073, complete genometype IV secretory pathway, VirD4 component2e-1377.8
NC_014923:5787493:5790775579077557925201746Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeTRAG family protein2e-1377.8
NC_015675:6342164:6345446634544663471911746Mesorhizobium opportunistum WSM2075 chromosome, complete genomeTRAG family protein2e-1377.8
NC_014246:57021:8101881018828591842Mobiluncus curtisii ATCC 43063 chromosome, complete genomeTraG/TraD family protein9e-1376.3
NC_015850:169180:1721031721031744572355Acidithiobacillus caldus SM-1 chromosome, complete genomeTRAG family protein1e-1275.9
NC_012982:711122:7139907139907159751986Hirschia baltica ATCC 49814, complete genomeTRAG family protein1e-1275.9
NC_012846:1679184:1680973168097316828891917Bartonella grahamii as4aup, complete genomeconjugal transfer protein TraG/VirD41e-1275.9
NC_004116:1276791:1304689130468913065061818Streptococcus agalactiae 2603V/R, complete genome1e-1275.5
NC_009719:1972545:1984249198424919863122064Parvibaculum lavamentivorans DS-1 chromosome, complete genomeconjugal transfer coupling protein TraG1e-1275.5
NC_017249:18493:3729937299392811983Bradyrhizobium japonicum USDA 6, complete genomeconjugal transfer protein2e-1275.1
NC_004463:18497:3730537305393322028Bradyrhizobium japonicum USDA 110, complete genomeconjugal transfer protein2e-1274.7
NC_008577:1489643:1491078149107814930751998Shewanella sp. ANA-3 chromosome 1, complete sequenceTRAG family protein3e-1274.7
NC_009720:4406991:4434900443490044368791980Xanthobacter autotrophicus Py2, complete genomeconjugal transfer coupling protein TraG3e-1274.3
NC_003295:2787371:2792029279202927940562028Ralstonia solanacearum GMI1000, complete genomePROBABLE PLASMID CONJUGATION TRAG TRANSMEMBRANE PROTEIN3e-1274.3
NC_014834:959986:9681419681419701261986Rhodopseudomonas palustris DX-1 chromosome, complete genomeTRAG family protein5e-1273.9
NC_018691:3082000:3095819309581930978222004Alcanivorax dieselolei B5 chromosome, complete genomeTraG-like protein4e-1273.9
NC_010943:1332243:1334372133437213363722001Stenotrophomonas maltophilia K279a, complete genomeputative conjugal transfer protein6e-1273.6
NC_007643:955362:968844968844969686843Rhodospirillum rubrum ATCC 11170, complete genome7e-1273.2
NC_012751:409333:416695416695417393699Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeVirD4 conjugal transfer protein8e-1273.2
NC_015381:2859000:2881633288163328836362004Burkholderia gladioli BSR3 chromosome 1, complete sequenceconjugal transfer protein TraG1e-1172.8
NC_015259:734795:7358277358277374221596Polymorphum gilvum SL003B-26A1 chromosome, complete genomePlasmid transfer factor, traG1e-1172.8
NC_007643:955362:9676959676959688191125Rhodospirillum rubrum ATCC 11170, complete genome1e-1172.4
NC_011992:3752867:3757497375749737595002004Acidovorax ebreus TPSY, complete genomeTRAG family protein1e-1172
NC_010514:6000:93049304110431740Methylobacterium radiotolerans JCM 2831 plasmid pMRAD03, completeTRAG family protein1e-1172
NC_014910:242845:2432882432882452912004Alicycliphilus denitrificans BC chromosome, complete genometrag family protein2e-1171.6
NC_010002:2933909:2969111296911129711202010Delftia acidovorans SPH-1, complete genomeTRAG family protein2e-1171.6
NC_014910:2930860:2935496293549629375022007Alicycliphilus denitrificans BC chromosome, complete genometrag family protein5e-1170.5
NC_015556:2265940:2270422227042222724131992Pseudomonas fulva 12-X chromosome, complete genomeTRAG family protein9e-1169.3
NC_010338:2443765:2450624245062424523451722Caulobacter sp. K31, complete genomeTRAG family protein1e-1068.9
NC_013422:1755875:1779991177999117824622472Halothiobacillus neapolitanus c2, complete genomeTRAG family protein2e-1068.2
NC_015259:485015:5308405308405323061467Polymorphum gilvum SL003B-26A1 chromosome, complete genomePlasmid transfer factor, traG3e-1067.8
NC_016609:4233701:4266867426686742688792013Niastella koreensis GR20-10 chromosome, complete genomeTRAG family protein4e-1067.4
NC_010125:2998619:3001295300129530033162022Gluconacetobacter diazotrophicus PAl 5, complete genomeputative conjugal transfer protein traG4e-1067.4
NC_015942:1947258:1965686196568619681812496Acidithiobacillus ferrivorans SS3 chromosome, complete genomeTRAG family protein5e-1067
NC_007925:3933765:3946807394680739488011995Rhodopseudomonas palustris BisB18, complete genomeTRAG protein6e-1066.6
NC_011365:1135750:1154211115421111561931983Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeconjugal transfer coupling protein TraG7e-1066.6
NC_014816:1592799:1596795159679515984711677Asticcacaulis excentricus CB 48 chromosome 1, complete sequencetrag family protein2e-0965.5
NC_011059:670345:6749096749096770952187Prosthecochloris aestuarii DSM 271, complete genome3e-0964.7
NC_014816:545441:5663965663965680721677Asticcacaulis excentricus CB 48 chromosome 1, complete sequencetrag family protein3e-0964.7
NC_017361:1528239:1543901154390115460332133Helicobacter pylori SouthAfrica7 chromosome, complete genomeconjugal transfer protein (traG)2e-0964.7
NC_017372:748097:7818747818747841262253Helicobacter pylori India7 chromosome, complete genomeVirD4 coupling protein2e-0964.7
NC_017371:1030148:1043680104368010454281749Helicobacter pylori Gambia94/24 chromosome, complete genomeVirD4 coupling protein4e-0964.3
NC_017367:278916:2990802990803008371758Helicobacter pylori F57, complete genomeconjugal transfer protein5e-0963.5
NC_017361:930280:9572629572629590071746Helicobacter pylori SouthAfrica7 chromosome, complete genomeVirD4 coupling protein5e-0963.5
NC_015603:1:1070110701122211521Lactobacillus kefiranofaciens ZW3 plasmid pWW2, complete sequenceprotein Trs1e-0862.8
NC_017357:973392:9884039884039901451743Helicobacter pylori 908 chromosome, complete genomehypothetical protein1e-0862.8
NC_017374:974279:9892909892909910321743Helicobacter pylori 2017 chromosome, complete genomeputative conjugal transfer protein1e-0862.8
NC_017381:982216:9972459972459989871743Helicobacter pylori 2018 chromosome, complete genomeconjugal transfer protein1e-0862.8
NC_011498:448000:4761054761054778321728Helicobacter pylori P12, complete genomeVirD4 coupling protein3e-0861.2
NC_010170:4800000:4876733487673348787422010Bordetella petrii, complete genomeconjugal transfer protein TraG3e-0860.8
NC_014100:2782000:2795208279520827971601953Caulobacter segnis ATCC 21756 chromosome, complete genomeTRAG family protein5e-0860.1
NC_015259:673662:6761806761806777571578Polymorphum gilvum SL003B-26A1 chromosome, complete genomePlasmid transfer factor, traG7e-0859.7
NC_015942:722980:7396097396097418762268Acidithiobacillus ferrivorans SS3 chromosome, complete genomeTRAG family protein3e-0757.8
NC_017371:1470582:1505340150534015072441905Helicobacter pylori Gambia94/24 chromosome, complete genomeVirD4 coupling protein3e-0654.7
NC_014256:485969:5108335108335129622130Helicobacter pylori B8 chromosome, complete genometype IV secretion system protein VirD46e-0653.5
NC_017063:834674:8517278517278539702244Helicobacter pylori ELS37 chromosome, complete genomeVirD4 coupling protein8e-0653.1