Pre_GI: BLASTP Hits

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Query: NC_017372:902043:920479 Helicobacter pylori India7 chromosome, complete genome

Start: 920479, End: 921459, Length: 981

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011296:1039749:1052103105210310531041002Thermodesulfovibrio yellowstonii DSM 11347, complete genomeiron(III) ABC transporter, permease protein5e-28125
NC_016048:1438721:1453649145364914546711023Oscillibacter valericigenes Sjm18-20, complete genomeABC transporter permease protein2e-1996.7
NC_009515:1409912:1414508141450814155211014Methanobrevibacter smithii ATCC 35061, complete genomeiron(III) ABC transporter, permease component1e-1894
NC_015519:426948:4601594601594612111053Tepidanaerobacter sp. Re1 chromosome, complete genomeABC transporter integral membrane subunit5e-1892
NC_009637:1421885:1433830143383014349091080Methanococcus maripaludis C7 chromosome, complete genometransport system permease2e-1790.1
NC_000917:1246806:125290812529081253894987Archaeoglobus fulgidus DSM 4304, complete genomeiron (III) ABC transporter, permease protein (hemU-2)2e-1789.7
NC_014222:799229:8118718118718129381068Methanococcus voltae A3 chromosome, complete genometransport system permease protein3e-1686.3
NC_015562:1571928:1574287157428715753331047Methanotorris igneus Kol 5 chromosome, complete genomeABC transporter integral membrane protein6e-1685.1
NC_018645:3719302:3719302371930237203751074Desulfobacula toluolica Tol2, complete genomepeptide iron ABC transporter permease2e-1583.2
NC_006138:3355028:3368033336803333690731041Desulfotalea psychrophila LSv54, complete genomeiron (III) ABC transporter, permease protein3e-1582.8
NC_011059:1391734:140088314008831401881999Prosthecochloris aestuarii DSM 271, complete genometransport system permease protein3e-1582.8
NC_003413:503315:521928521928522923996Pyrococcus furiosus DSM 3638, complete genomeputative iron ABC transporter3e-1582.8
NC_015680:21500:5005950059511051047Pyrococcus yayanosii CH1 chromosome, complete genomeiron(III) ABC transporter permease5e-1582
NC_009135:330628:3723383723383733841047Methanococcus maripaludis C5, complete genometransport system permease protein7e-1581.6
NC_013156:381910:3826783826783837241047Methanocaldococcus fervens AG86, complete genometransport system permease protein2e-1480.1
NC_009975:1374500:1396116139611613971621047Methanococcus maripaludis C6, complete genometransport system permease protein3e-1479.7
NC_015152:1602412:160328416032841604264981Spirochaeta sp. Buddy chromosome, complete genomeiron ABC transporter transmembrane protein3e-1479.3
NC_009437:166179:1829991829991840751077Caldicellulosiruptor saccharolyticus DSM 8903, complete genometransport system permease protein7e-1478.2
NC_011899:12699:2619126191272041014Halothermothrix orenii H 168, complete genometransport system permease protein1e-1377.8
NC_014507:611625:6304416304416315321092Methanoplanus petrolearius DSM 11571 chromosome, complete genometransport system permease1e-1377.8
NC_018870:81396:9880798807999011095Thermacetogenium phaeum DSM 12270 chromosome, complete genomeABC transporter, permease protein, FecCD family1e-1377.8
NC_013887:407771:4091274091274101761050Methanocaldococcus sp. FS406-22 chromosome, complete genometransport system permease protein2e-1376.6
NC_017192:2153461:215730821573082158303996Arcobacter sp. L, complete genomeiron ABC transporter permease component3e-1376.3
NC_016627:4203775:4203775420377542047791005Clostridium clariflavum DSM 19732 chromosome, complete genomeFe3+-siderophore ABC transporter permease3e-1376.3
NC_000909:67729:8193081930829791050Methanocaldococcus jannaschii DSM 2661, complete genomehemin permease (hemU)4e-1375.9
NC_021182:3438601:3456030345603034571151086Clostridium pasteurianum BC1, complete genomeABC-type Fe3+-siderophore transport system, permease component8e-1374.7
NC_015474:448939:4670054670054680511047Pyrococcus sp. NA2 chromosome, complete genomeiron(III) ABC transporter, permease protein1e-1274.3
NC_014122:842560:864446864446865423978Methanocaldococcus infernus ME chromosome, complete genometransport system permease protein1e-1274.3
NC_006085:854500:8589388589388599961059Propionibacterium acnes KPA171202, complete genomeABC-type transporter, permease component2e-1273.2
NC_016516:834260:8397038397038407641062Propionibacterium acnes TypeIA2 P.acn33 chromosome, completeHeme ABC transporter, permease protein HmuU3e-1273.2
NC_016512:843938:8482808482808493411062Propionibacterium acnes TypeIA2 P.acn17 chromosome, completeHeme ABC transporter, permease protein HmuU3e-1273.2
NC_016511:844500:8489038489038499641062Propionibacterium acnes TypeIA2 P.acn31 chromosome, completeHeme ABC transporter, permease protein HmuU3e-1273.2
NC_014039:869826:8752698752698763301062Propionibacterium acnes SK137 chromosome, complete genomeHeme ABC transporter, permease protein HmuU3e-1273.2
NC_010506:4951500:4956645495664549576821038Shewanella woodyi ATCC 51908, complete genometransport system permease protein3e-1272.8
NC_014507:611625:6450056450056461801176Methanoplanus petrolearius DSM 11571 chromosome, complete genometransport system permease6e-1272
NC_010609:1077453:108309710830971083873777Lactobacillus reuteri JCM 1112, complete genomeiron(III) ABC transporter permease component1e-1171.2
NC_015416:1872000:1891047189104718921471101Methanosaeta concilii GP-6 chromosome, complete genomeiron chelate uptake ABC transporter permease1e-1171.2
NC_018870:115982:1528191528191538801062Thermacetogenium phaeum DSM 12270 chromosome, complete genomeABC transporter, permease protein2e-1170.5
NC_020302:2116468:2129739212973921308601122Corynebacterium halotolerans YIM 70093 = DSM 44683, completeABC-type Fe3+-siderophore transport system, permease component5e-1168.9
NC_013385:1617338:1622736162273616238871152Ammonifex degensii KC4, complete genometransport system permease protein2e-1067
NC_008701:195850:2276942276942287341041Pyrobaculum islandicum DSM 4184, complete genometransport system permease protein2e-1066.6
NC_012917:3198000:3219582321958232206191038Pectobacterium carotovorum subsp. carotovorum PC1, complete genometransport system permease protein9e-1064.7
NC_007951:1042291:1061088106108810620981011Burkholderia xenovorans LB400 chromosome 1, complete sequenceABC Fe3+-hydroxamate/cobalamin transporter, inner membrane subunit1e-0964.3
NC_016612:178864:179682179682180677996Klebsiella oxytoca KCTC 1686 chromosome, complete genometransporter permease4e-0962.4
NC_007355:544796:5604815604815615241044Methanosarcina barkeri str. fusaro chromosome 1, complete sequenceFe(III) dicitrate ABC transporter, permease9e-0961.2
NC_017317:51428:6726067260683661107Corynebacterium ulcerans 809 chromosome, complete genomezinc ABC transport system permease protein9e-0961.2
NC_015275:820723:8332648332648342861023Clostridium lentocellum DSM 5427 chromosome, complete genomeABC-type transporter, integral membrane subunit1e-0860.8
NC_018515:570366:5703665703665714511086Desulfosporosinus meridiei DSM 13257 chromosome, complete genomeFe3+-siderophore ABC transporter permease2e-0860.5
NC_013421:1545386:1545386154538615464051020Pectobacterium wasabiae WPP163, complete genometransport system permease protein1e-0860.5
NC_014654:2180994:2182277218227721832901014Halanaerobium sp. 'sapolanicus' chromosome, complete genometransport system permease protein1e-0860.5
NC_012779:1820244:1834673183467318356741002Edwardsiella ictaluri 93-146, complete genomeHmuU protein1e-0860.5
NC_007947:1703326:1722006172200617231121107Methylobacillus flagellatus KT, complete genometransport system permease protein2e-0860.1
NC_014831:1557485:1557485155748515586481164Thermaerobacter marianensis DSM 12885 chromosome, complete genometransport system permease protein2e-0860.1
NC_018645:3977352:3978413397841339794261014Desulfobacula toluolica Tol2, complete genomeiron(III) dicitrate ABC transporter permease3e-0859.7
NC_016641:4151403:4152503415250341535671065Paenibacillus terrae HPL-003 chromosome, complete genomeABC transporter permease3e-0859.7
NC_015276:855150:8742188742188752551038Marinomonas mediterranea MMB-1 chromosome, complete genomeABC-type transporter, integral membrane subunit3e-0859.7
NC_006510:2910000:292448029244802925460981Geobacillus kaustophilus HTA426, complete genomeferrichrome ABC transporter (permease)5e-0858.9
NC_017047:3085000:3086863308686330878911029Rahnella aquatilis HX2 chromosome, complete genometransport system permease5e-0858.9
NC_001263:2574755:2596149259614925971651017Deinococcus radiodurans R1 chromosome 1, complete sequenceiron ABC transporter, permease protein, putative6e-0858.5
NC_019897:3669888:3672117367211736731601044Thermobacillus composti KWC4 chromosome, complete genomeFe3+-siderophore ABC transporter permease7e-0858.5
NC_014958:3346500:3368115336811533691221008Deinococcus maricopensis DSM 21211 chromosome, complete genomeABC transporter integral membrane subunit7e-0858.2
NC_010506:4873487:4878633487863348796491017Shewanella woodyi ATCC 51908, complete genometransport system permease protein8e-0858.2
NC_014563:19307:363183631837304987Pantoea vagans C9-1 plasmid pPag2, complete sequenceAchromobactin transport system permease protein cbrB1e-0757.8
NC_012804:1940500:1954084195408419550881005Thermococcus gammatolerans EJ3, complete genomeIron(III) dicitrate transport system permease protein (fecD)1e-0757.8
NC_009921:4186000:4202819420281942039131095Frankia sp. EAN1pec, complete genometransport system permease protein1e-0757.4
NC_005126:5188976:519893151989315199887957Photorhabdus luminescens subsp. laumondii TTO1, complete genomeIron(III) dicitrate transport system permease protein FecD1e-0757.4
NC_015859:2726414:274365727436572744622966Corynebacterium variabile DSM 44702 chromosome, complete genomezinc ABC transport system permease2e-0757
NC_010718:2513917:2521257252125725223181062Natranaerobius thermophilus JW/NM-WN-LF, complete genometransport system permease protein3e-0756.6
NC_010382:1020516:1019518101951810205191002Lysinibacillus sphaericus C3-41, complete genomehemin transport system permease protein3e-0756.6
NC_009464:225400:2428572428572439031047Uncultured methanogenic archaeon RC-I, complete genomeputative ABC-type transport system, permease component3e-0756.6
NC_004578:6334735:6338681633868163397211041Pseudomonas syringae pv. tomato str. DC3000, complete genomehaemin ABC transporter, permease protein, putative2e-0756.6
NC_020156:3157899:317354131735413174527987Nonlabens dokdonensis DSW-6, complete genomeABC-type iron (III) transport system, permease component2e-0756.6
NC_009952:526456:5488855488855499311047Dinoroseobacter shibae DFL 12, complete genomeABC-type cobalamin/Fe3+-siderophores transport system protein3e-0756.2
NC_008321:977500:9958369958369969841149Shewanella sp. MR-4, complete genometransport system permease protein3e-0756.2
NC_013446:2130021:2130021213002121311571137Comamonas testosteroni CNB-2, complete genomeiron (III) ABC transporter permease3e-0756.2
NC_014915:3039639:304413830441383045118981Geobacillus sp. Y412MC52 chromosome, complete genometransport system permease protein3e-0756.2
NC_010175:398453:4033744033744044621089Chloroflexus aurantiacus J-10-fl, complete genometransport system permease protein4e-0755.8
NC_012032:398419:4033464033464044281083Chloroflexus sp. Y-400-fl, complete genometransport system permease protein4e-0755.8
NC_009922:2487492:2502800250280025038041005Alkaliphilus oremlandii OhILAs, complete genometransport system permease protein5e-0755.5
NC_015563:3401867:3426836342683634279211086Delftia sp. Cs1-4 chromosome, complete genomeABC transporter integral membrane protein6e-0755.5
NC_015160:1467445:1470605147060514716601056Odoribacter splanchnicus DSM 20712 chromosome, complete genometransport system permease protein8e-0755.1
NC_005957:4311679:4327289432728943293252037Bacillus thuringiensis serovar konkukian str. 97-27, completeiron compound ABC transporter, permease8e-0755.1
NC_015425:641000:654198654198655196999Clostridium botulinum BKT015925 chromosome, complete genomeiron compound ABC transporter permease6e-0755.1
NC_014622:1514416:1521940152194015229861047Paenibacillus polymyxa SC2 chromosome, complete genomecobalamin/iron-siderophores ABC transporter permease9e-0754.7
NC_008262:227354:267277267277268263987Clostridium perfringens SM101, complete genomeferrichrome ABC transporter (permease)-like protein lin22871e-0654.3
NC_014483:1376500:1384184138418413852301047Paenibacillus polymyxa E681 chromosome, complete genomeHemin transport system permease protein hmuU1e-0654.3
NC_014550:3377834:3392390339239033934541065Arthrobacter arilaitensis Re117, complete genomeiron-siderophore ABC transporter inner membrane subunit2e-0653.9
NC_015563:3266004:3291785329178532928731089Delftia sp. Cs1-4 chromosome, complete genomeABC transporter integral membrane protein1e-0653.9
NC_008687:133728:1565641565641576251062Paracoccus denitrificans PD1222 chromosome 2, complete sequencetransport system permease protein1e-0653.9
NC_016641:3173250:3181234318123431822801047Paenibacillus terrae HPL-003 chromosome, complete genomeHemin transporter permease hmuU1e-0653.9
NC_013520:120214:1252731252731263101038Veillonella parvula DSM 2008, complete genometransport system permease protein3e-0653.1
NC_004557:806878:8300928300928311441053Clostridium tetani E88, complete genomeiron(III) dicitrate transport system permease protein fecD3e-0653.1
NC_017047:3085000:3135629313562931366361008Rahnella aquatilis HX2 chromosome, complete genomevtamin B12-transporter permease3e-0653.1
NC_016023:1658377:1670706167070616717791074Bacillus coagulans 36D1 chromosome, complete genomeABC transporter integral membrane protein3e-0653.1
NC_013520:1936209:1948423194842319494241002Veillonella parvula DSM 2008, complete genometransport system permease protein2e-0653.1
NC_015172:1471501:150284615028461503832987Syntrophobotulus glycolicus DSM 8271 chromosome, complete genometransport system permease protein3e-0652.8
NC_004193:375416:4788154788154798281014Oceanobacillus iheyensis HTE831, complete genomeferrichrome ABC transporter permease4e-0652.8
NC_008262:904000:9228629228629238751014Clostridium perfringens SM101, complete genomeferrichrome transport system, permease protein5e-0652.4
NC_003366:981105:9961049961049971171014Clostridium perfringens str. 13, complete genomeprobable ferrichrome ABC transporter5e-0652.4
NC_015709:1459838:1501096150109615021121017Zymomonas mobilis subsp. pomaceae ATCC 29192 chromosome, completetransport system permease4e-0652.4
NC_020063:2077233:2094209209420920952371029Enterobacteriaceae bacterium strain FGI 57, complete genomeABC-type Fe3+-siderophore transport system, permease component6e-0652
NC_015391:448833:4652594652594662901032Carnobacterium sp. 17-4 chromosome, complete genomeputative vitamin B12 permease7e-0651.6
NC_006138:225832:2312732312732323131041Desulfotalea psychrophila LSv54, complete genomeFe(III) ABC-transporter, permease protein7e-0651.6
NC_015160:4285542:432499943249994325979981Odoribacter splanchnicus DSM 20712 chromosome, complete genometransport system permease protein8e-0651.6
NC_004663:2437760:244983224498322450812981Bacteroides thetaiotaomicron VPI-5482, complete genomeFe3+ ABC transporter, permease protein8e-0651.6
NC_015276:1426000:1447778144777814488301053Marinomonas mediterranea MMB-1 chromosome, complete genomeABC-type transporter, integral membrane subunit9e-0651.2