Pre_GI: BLASTP Hits

Some Help

Query: NC_017362:1512959:1517467 Helicobacter pylori Lithuania75 chromosome, complete genome

Start: 1517467, End: 1519500, Length: 2034

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017371:1470582:1474666147466614766962031Helicobacter pylori Gambia94/24 chromosome, complete genomerelaxase01298
NC_000921:1007519:1045778104577810478112034Helicobacter pylori J99, complete genomehypothetical protein01281
NC_018939:1044000:1058391105839110602171827Helicobacter pylori 26695 chromosome, complete genomerelaxase01165
NC_017372:748097:7529897529897550192031Helicobacter pylori India7 chromosome, complete genomehypothetical protein01155
NC_000915:1044000:1058373105837310601751803Helicobacter pylori 26695, complete genomehypothetical protein01147
NC_017379:996500:1015676101567610177152040Helicobacter pylori Puno135 chromosome, complete genomehypothetical protein01132
NC_014256:485969:4907314907314921731443Helicobacter pylori B8 chromosome, complete genomehypothetical protein0872
NC_014256:485969:488306488306488938633Helicobacter pylori B8 chromosome, complete genomehypothetical protein3e-112406
NC_015674:1605923:1610985161098516131712187Helicobacter bizzozeronii CIII-1, complete genomehypothetical protein1e-64248
NC_011498:448000:4730424730424749551914Helicobacter pylori P12, complete genomerelaxase1e-22108
NC_017358:220900:2454762454762473831908Helicobacter pylori Cuz20 chromosome, complete genomehypothetical protein3e-22107
NC_018939:1044000:105082910508291051062234Helicobacter pylori 26695 chromosome, complete genomehypothetical protein5e-22106
NC_000915:1044000:105081210508121051045234Helicobacter pylori 26695, complete genomehypothetical protein5e-22106
NC_017376:57500:8102181021829311911Helicobacter pylori SNT49 chromosome, complete genomerelaxase7e-22106
NC_010698:870312:8942988942988962051908Helicobacter pylori Shi470, complete genomehypothetical protein2e-21105
NC_014555:1526775:1555149155514915570591911Helicobacter pylori PeCan4 chromosome, complete genomehypothetical protein1e-21105
NC_017361:930280:9542129542129561221911Helicobacter pylori SouthAfrica7 chromosome, complete genomehypothetical protein1e-21105
NC_011333:1040192:1063336106333610652461911Helicobacter pylori G27 chromosome, complete genomehypothetical protein8e-22105
NC_014256:448710:4670384670384689331896Helicobacter pylori B8 chromosome, complete genomehypothetical protein8e-22105
NC_017367:278916:3019963019963039061911Helicobacter pylori F57, complete genomehypothetical protein6e-21103
NC_000915:1044000:106605310660531066874822Helicobacter pylori 26695, complete genomehypothetical protein1e-20102
NC_009714:113975:1282331282331298551623Campylobacter hominis ATCC BAA-381, complete genomerelaxase/mobilization nuclease domain-containing protein3e-1894
NC_017361:1528239:1546885154688515488731989Helicobacter pylori SouthAfrica7 chromosome, complete genomehypothetical protein2e-1585.1
NC_014256:485969:5017645017645037912028Helicobacter pylori B8 chromosome, complete genomehypothetical protein4e-1377.4
NC_017063:834674:8706018706018723101710Helicobacter pylori ELS37 chromosome, complete genomehypothetical protein1e-1068.9
NC_017371:1470582:1486279148627914883242046Helicobacter pylori Gambia94/24 chromosome, complete genomehypothetical protein2e-1068.2
NC_017372:748097:7642807642807661871908Helicobacter pylori India7 chromosome, complete genomehypothetical protein2e-0861.6
NC_017378:1518529:1539628153962815411481521Helicobacter pylori Puno120 chromosome, complete genomehypothetical protein8e-0859.7
NC_014560:1366747:1397845139784513998211977Helicobacter pylori SJM180 chromosome, complete genomehypothetical protein9e-0859.3
NC_017375:77142:8601186011880802070Helicobacter pylori 83 chromosome, complete genomehypothetical protein3e-0654.3