Pre_GI: BLASTP Hits

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Query: NC_017355:997089:998712 Helicobacter pylori v225d chromosome, complete genome

Start: 998712, End: 999536, Length: 825

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012973:967380:968424968424969248825Helicobacter pylori B38 chromosome, complete genomesmall-conductance mechanosensitive channel; membrane protein2e-121435
NC_014256:485969:530818530818531642825Helicobacter pylori B8 chromosome, complete genomeMscS family small conductance mechanosensitive ion channel2e-121435
NC_017362:992293:994018994018994842825Helicobacter pylori Lithuania75 chromosome, complete genomemechanosensitive channel MscS2e-121434
NC_018939:1044000:104707210470721047896825Helicobacter pylori 26695 chromosome, complete genomehypothetical protein1e-120432
NC_000915:1044000:104705410470541047878825Helicobacter pylori 26695, complete genomehypothetical protein1e-120432
NC_017379:996500:997419997419998243825Helicobacter pylori Puno135 chromosome, complete genomesmall-conductance mechanosensitive channel; membrane protein2e-119428
NC_000921:1007519:101367210136721014496825Helicobacter pylori J99, complete genomehypothetical protein2e-118425
NC_017371:1030148:103322310332231034047825Helicobacter pylori Gambia94/24 chromosome, complete genomehypothetical protein2e-118425
NC_017381:982216:985286985286986110825Helicobacter pylori 2018 chromosome, complete genomeMechanosensitive channel2e-118425
NC_017374:974279:977331977331978155825Helicobacter pylori 2017 chromosome, complete genomeMechanosensitive channel protein2e-118425
NC_017357:973392:976444976444977268825Helicobacter pylori 908 chromosome, complete genomehypothetical protein2e-118425
NC_009654:4253431:425706542570654257895831Marinomonas sp. MWYL1, complete genomeMscS mechanosensitive ion channel3e-29129
NC_009092:1305355:132588213258821326706825Shewanella loihica PV-4, complete genomeMscS Mechanosensitive ion channel5e-29128
NC_012668:83641:108699108699109562864Vibrio cholerae MJ-1236 chromosome 1, complete sequencehypothetical protein2e-28126
NC_016940:3600749:362449536244953625313819Saprospira grandis str. Lewin chromosome, complete genomemechanosensitive ion channel protein MscS2e-24113
NC_017192:497950:510259510259511119861Arcobacter sp. L, complete genomemechanosensitive ion channel1e-23110
NC_013316:1:163741637417255882Clostridium difficile R20291, complete genomeputative mechanosensitive ion channel protein4e-22105
NC_009089:1:166121661217493882Clostridium difficile 630, complete genomeputative mechanosensitive ion channel protein2e-21103
NC_003366:255480:279879279879280694816Clostridium perfringens str. 13, complete genomehypothetical protein2e-21103
NC_008261:225425:249255249255250070816Clostridium perfringens ATCC 13124, complete genomemechanosensitive ion channel family protein2e-21103
NC_008262:227354:251679251679252494816Clostridium perfringens SM101, complete genomeMechanosensitive ion channel family4e-21102
NC_014471:674500:709666709666710502837Ignisphaera aggregans DSM 17230 chromosome, complete genomeMscS Mechanosensitive ion channel1e-20100
NC_019942:1211535:123989512398951240713819Aciduliprofundum sp. MAR08-339, complete genomesmall-conductance mechanosensitive channel2e-2099.8
NC_020541:3655223:366851336685133669397885Rhodanobacter sp. 2APBS1, complete genomesmall-conductance mechanosensitive channel2e-2099.4
NC_012438:1600534:1601127160112716021431017Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomeMscS Mechanosensitive ion channel3e-1789
NC_015144:1333179:133443413344341335351918Weeksella virosa DSM 16922 chromosome, complete genomeMscS Mechanosensitive ion channel8e-1787.8
NC_014844:1818939:183836918383691839220852Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomemechanosensitive ion channel protein MscS2e-1686.3
NC_014471:1269571:127610312761031276909807Ignisphaera aggregans DSM 17230 chromosome, complete genomeMscS Mechanosensitive ion channel2e-1582.8
NC_014355:243543:243543243543244343801Candidatus Nitrospira defluvii, complete genomesmall-conductance mechanosensitive channel2e-1480.1
NC_015318:290849:3066733066733077671095Hippea maritima DSM 10411 chromosome, complete genomemechanosensitive ion chanel protein MscS9e-1374.3
NC_016745:2280375:2280375228037522815321158Oceanimonas sp. GK1 chromosome, complete genomemechanosensitive ion channel protein MscS1e-1273.9
NC_004578:4940000:495636049563604957190831Pseudomonas syringae pv. tomato str. DC3000, complete genomemechanosensitive ion channel family protein1e-1273.9
NC_014297:1574238:1593649159364915947641116Halalkalicoccus jeotgali B3 chromosome, complete genomeMscS Mechanosensitive ion channel1e-1273.9
NC_019940:2731105:2734172273417227356771506Thioflavicoccus mobilis 8321 chromosome, complete genomesmall-conductance mechanosensitive channel1e-1273.6
NC_017080:50000:568555685557832978Phycisphaera mikurensis NBRC 102666, complete genomeputative small-conductance mechanosensitive channel1e-1273.6
NC_007005:4857768:487202348720234872853831Pseudomonas syringae pv. syringae B728a, complete genomeMscS Mechanosensitive ion channel2e-1273.2
NC_014507:1373325:1374444137444413754781035Methanoplanus petrolearius DSM 11571 chromosome, complete genomemechanosensitive ion channel MscS4e-1272
NC_007298:2947200:295468129546812955511831Dechloromonas aromatica RCB, complete genomeMscS Mechanosensitive ion channel:Conserved TM helix1e-1067.4
NC_016513:1859767:1877463187746318807863324Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completepotassium efflux protein KefA2e-1066.6
NC_013416:1526920:1542313154231315456363324Aggregatibacter actinomycetemcomitans D11S-1, complete genomepotassium efflux system KefA (Protein aefA)2e-1066.6
NC_007498:357484:385326385326386180855Pelobacter carbinolicus DSM 2380, complete genomesmall-conductance mechanosensitive channel3e-1065.9
NC_020409:2856481:2896725289672528990282304Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeMscS Mechanosensitive ion channel5e-1065.1
NC_009482:2109270:2109270210927021103521083Synechococcus sp. RCC307 chromosome, complete genomesmall-conductance mechanosensitive channel protein1e-0963.9
NC_003911:2042389:2043404204340420458362433Silicibacter pomeroyi DSS-3, complete genomemechanosensitive ion channel family protein1e-0963.5
NC_013037:5442131:545479854547985455673876Dyadobacter fermentans DSM 18053, complete genomeMscS Mechanosensitive ion channel2e-0963.5
NC_009952:749426:7506747506747520561383Dinoroseobacter shibae DFL 12, complete genomeMscS Mechanosensitive ion channel2e-0963.5
NC_007517:2165657:2168648216864821697301083Geobacter metallireducens GS-15, complete genomeMscS Mechanosensitive ion channel3e-0962.8
NC_012997:4906423:490971549097154910701987Teredinibacter turnerae T7901, complete genomeMscS Mechanosensitive ion channel3e-0962.8
NC_009483:2401209:2417464241746424185431080Geobacter uraniireducens Rf4 chromosome, complete genomemechanosensitive ion channel MscS3e-0962.4
NC_007802:1991211:1993442199344219958322391Jannaschia sp. CCS1, complete genomeMscS Mechanosensitive ion channel4e-0962
NC_013173:1305916:1308676130867613100131338Desulfomicrobium baculatum DSM 4028, complete genomeMscS Mechanosensitive ion channel4e-0962
NC_015318:1151422:1152663115266311544711809Hippea maritima DSM 10411 chromosome, complete genomemechanosensitive ion chanel protein MscS6e-0961.6
NC_015425:2690448:2720030272003027211721143Clostridium botulinum BKT015925 chromosome, complete genomemechanosensitive channel protein2e-0859.7
NC_008554:4839116:4858787485878748598751089Syntrophobacter fumaroxidans MPOB, complete genomeMscS Mechanosensitive ion channel4e-0858.9
NC_019748:763011:7801927801927818021611Stanieria cyanosphaera PCC 7437, complete genomeMscS Mechanosensitive ion channel4e-0858.9
NC_009926:34848:5104251042527091668Acaryochloris marina MBIC11017 plasmid pREB1, complete sequencemechanosensitive ion channel, putative3e-0858.9
NC_017955:3006500:302331230233123024148837Modestobacter marinus, complete genomeMechanosensitive ion channel3e-0858.9
NC_007519:3391090:3405581340558134080312451Desulfovibrio alaskensis G20 chromosome, complete genomemechanosensitive ion channel family protein6e-0858.2
NC_015519:2739347:274158327415832742446864Tepidanaerobacter sp. Re1 chromosome, complete genomeMscS Mechanosensitive ion channel1e-0757.4
NC_007517:2926792:293255229325522933448897Geobacter metallireducens GS-15, complete genomeMscS Mechanosensitive ion channel1e-0757.4
NC_004459:1:77407740102562517Vibrio vulnificus CMCP6 chromosome I, complete sequenceSmall-conductance mechanosensitive channel1e-0757
NC_008319:2471341:2487134248713424881531020Synechococcus sp. CC9311, complete genometransporter, small conductance mechanosensitive ion channel (MscS) family protein1e-0757
NC_012791:721813:7510217510217521091089Variovorax paradoxus S110 chromosome 1, complete genomeMscS Mechanosensitive ion channel2e-0756.2
NC_010410:3166279:318556231855623186479918Acinetobacter baumannii AYE, complete genomehypothetical protein2e-0756.2
NC_014658:701020:722479722479723243765Methanothermus fervidus DSM 2088 chromosome, complete genomemscs mechanosensitive ion channel6e-0755.1
NC_015846:790374:791877791877792707831Capnocytophaga canimorsus Cc5 chromosome, complete genomehypothetical protein6e-0755.1
NC_015186:1698000:1719736171973617221262391Acidiphilium multivorum AIU301, complete genomeputative MscS family transporter5e-0755.1
NC_008800:3330944:3368224336822433715713348Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,potassium efflux protein KefA5e-0755.1
NC_009484:1627734:1649474164947416518642391Acidiphilium cryptum JF-5 chromosome, complete genomemechanosensitive ion channel MscS5e-0755.1
NC_010321:2319820:234413123441312344982852Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completemechanosensitive ion channel protein MscS8e-0754.7
NC_014314:1485500:150993515099351510822888Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completemechanosensitive ion channel protein MscS8e-0754.7
NC_014729:1908086:1922186192218619233431158Halogeometricum borinquense DSM 11551 chromosome, complete genomesmall-conductance mechanosensitive channel6e-0754.7
NC_009792:1345500:1360767136076713617981032Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-0654.3
NC_015566:1127595:1162185116218511655713387Serratia sp. AS12 chromosome, complete genomemechanosensitive ion channel MscS8e-0754.3
NC_014964:2301835:232614623261462327000855Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completemechanosensitive ion channel protein MscS8e-0754.3
NC_015567:1127780:1162370116237011657563387Serratia sp. AS9 chromosome, complete genomemechanosensitive ion channel MscS8e-0754.3
NC_011884:315839:3384523384523398701419Cyanothece sp. PCC 7425, complete genomeMscS Mechanosensitive ion channel8e-0754.3
NC_008262:297960:3002783002783014141137Clostridium perfringens SM101, complete genomemechanosensitive ion channel family protein2e-0653.5
NC_009428:833701:8347408347408372892550Rhodobacter sphaeroides ATCC 17025 chromosome, complete genomemechanosensitive ion channel MscS2e-0653.5
NC_009727:357206:3691063691063712022097Coxiella burnetii Dugway 7E9-12, complete genometransporter, small conductance mechanosensitive ion channel (MscS) family protein2e-0653.5
NC_007947:1556437:1562664156266415637311068Methylobacillus flagellatus KT, complete genomeMscS Mechanosensitive ion channel2e-0653.5
NC_011528:1769349:1772850177285017749462097Coxiella burnetii CbuK_Q154, complete genomemechanosensitive ion channel2e-0653.5
NC_011333:1040192:1043492104349210453751884Helicobacter pylori G27 chromosome, complete genomehypothetical protein2e-0653.1
NC_002971:1545924:1549514154951415516102097Coxiella burnetii RSA 493, complete genomehypothetical protein3e-0652.8
NC_019962:2654604:267800626780062678935930Natrinema pellirubrum DSM 15624, complete genomesmall-conductance mechanosensitive channel3e-0652.4
NC_008593:2457594:2485956248595624871821227Clostridium novyi NT, complete genomeMechanosensitive ion channel family3e-0652.4
NC_009654:3316458:333067833306783331592915Marinomonas sp. MWYL1, complete genomeMscS mechanosensitive ion channel4e-0652.4
NC_014532:1191267:1197911119791112014323522Halomonas elongata DSM 2581, complete genomeK05802 potassium efflux system protein KefA4e-0652
NC_010524:3391075:3392603339260333939611359Leptothrix cholodnii SP-6, complete genomeMscS Mechanosensitive ion channel6e-0651.6
NC_005071:913500:9338059338059357811977Prochlorococcus marinus str. MIT 9313, complete genomeputative mechanosensitive ion channel, MscS family6e-0651.6
NC_011080:1750000:1753127175312717541581032Salmonella enterica subsp. enterica serovar Newport str. SL254,MscS family inner membrane protein YnaI8e-0651.2
NC_016614:1543333:1545084154508415476602577Vibrio sp. EJY3 chromosome 2, complete sequencepotassium efflux system kefA / Small-conductance mechanosensitive channel8e-0651.2
NC_017046:1709578:1713424171342417145391116Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein1e-0550.8