Pre_GI: BLASTP Hits

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Query: NC_017354:1465925:1468690 Helicobacter pylori 52 chromosome, complete genome

Start: 1468690, End: 1472439, Length: 3750

Host Lineage: Helicobacter pylori; Helicobacter; Helicobacteraceae; Campylobacterales; Proteobacteria; Bacteria

General Information: This genus consists of organisms that colonize the mucosal layer of the gastrointestinal tract or are found enterohepatically (in the liver). It was only recently discovered (1983) by two Australians (Warren and Marshall) that this organism was associated with peptic ulcers. It is one of the most common chronic infectious organisms, and is found in half the world's population. This organism attacks the gastric epithilial surface, resulting in chronic gastritis, and can cause more severe diseases including those that lead to gastric carcinomas and lymphomas, peptic ulcers, and severe diarrhea. It is an extracellular pathogen that persists in the gastric environment, which has a very low pH, by production of the urease enzyme, which converts urea to ammonia and carbon dioxide, a process which can counteract the acidic environment by production of a base. The toxins include cytolethal distending toxin, vacuolating cytotoxin (VacA) that induces host epithelial cell apopoptosis (cell death), and the cytotoxin associated antigen (CagA) which results in alteration to the host cell signalling pathways. The CagA protein is translocated into host cells by a type IV secretion system encoded by the cag pathogenicity island.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017375:1498000:1498187149818715019603774Helicobacter pylori 83 chromosome, complete genometype II restriction-modification enzyme02008
NC_011498:1571840:1575820157582015797283909Helicobacter pylori P12, complete genometype IIS R-M system restriction/modification enzyme01602
NC_014555:1477934:1480610148061014843593750Helicobacter pylori PeCan4 chromosome, complete genomeputative type IIS restriction-modification protein01431
NC_017365:1466500:1472607147260714761913585Helicobacter pylori F30, complete genomeType IIG restriction-modification enzyme01417
NC_018939:1583653:1590672159067215945113840Helicobacter pylori 26695 chromosome, complete genometype IIS restriction enzyme R and M protein (ECO57IR)01404
NC_000915:1583967:1590649159064915944883840Helicobacter pylori 26695, complete genometype IIS restriction enzyme R and M protein (ECO57IR)01404
NC_017378:1489818:1499346149934615029123567Helicobacter pylori Puno120 chromosome, complete genometype II S restriction-modification protein01384
NC_017367:1505780:1512425151242515151572733Helicobacter pylori F57, complete genomeType IIG restriction-modification enzyme01179
NC_008787:31999:5460554605583393735Campylobacter jejuni subsp. jejuni 81-176, complete genometype II restriction-modification enzyme0896
NC_003912:30265:4469944699484723774Campylobacter jejuni RM1221, complete genometype II restriction-modification enzyme0741
NC_017281:30261:4469744697481193423Campylobacter jejuni subsp. jejuni S3 chromosome, complete genomePutative type IIS restriction /modification enzyme, N-terminal protein0689
NC_006347:3390193:3412654341265434164633810Bacteroides fragilis YCH46, complete genomeputative type IIS restriction/modification enzyme1e-179631
NC_017280:30388:5300453004567083705Campylobacter jejuni subsp. jejuni M1 chromosome, complete genomePutative type IIS restriction/modification enzyme9e-163575
NC_017279:29737:4623146231500043774Campylobacter jejuni subsp. jejuni IA3902 chromosome, completetype II restriction-modification enzyme2e-162574
NC_009839:30409:5298152981566853705Campylobacter jejuni subsp. jejuni 81116, complete genomehypothetical protein4e-162573
NC_009707:36024:4933349333530913759Campylobacter jejuni subsp. doylei 269.97 chromosome, completetype II restriction-modification enzyme9e-160565
NC_014802:27857:5308953089566043516Campylobacter jejuni subsp. jejuni ICDCCJ07001 chromosome, completetype II restriction-modification enzyme9e-159561
NC_012039:1399699:1399699139969914034693771Campylobacter lari RM2100, complete genometype IIS restriction/modification enzyme5e-153542
NC_002163:29726:4642446424490272604Campylobacter jejuni subsp. jejuni NCTC 11168, complete genomeputative type IIS restriction /modification enzyme, N-terminal half4e-134479
NC_017367:1505780:1511338151133815124531116Helicobacter pylori F57, complete genomeType IIG restriction-modification enzyme3e-116421
NC_013730:4118355:4127499412749941309783480Spirosoma linguale DSM 74, complete genomeEco57I restriction endonuclease3e-91337
NC_010730:1724443:1726422172642217300513630Sulfurihydrogenibium sp. YO3AOP1, complete genomehypothetical protein1e-86322
NC_015499:1493500:1511909151190915152353327Thermodesulfobium narugense DSM 14796 chromosome, complete genomehypothetical protein3e-75284
NC_002163:29726:4899648996501561161Campylobacter jejuni subsp. jejuni NCTC 11168, complete genomeputative type IIS restriction /modification enzyme, C-terminal half2e-74281
NC_017161:282500:2902062902062944324227Hydrogenobacter thermophilus TK-6 chromosome, complete genomehypothetical protein4e-73277
NC_013799:282500:2902162902162944424227Hydrogenobacter thermophilus TK-6, complete genomeputative restriction endonuclease4e-73277
NC_015311:2059879:2082096208209620854073312Prevotella denticola F0289 chromosome, complete genomeEco57I restriction endonuclease1e-71272
NC_013894:464907:4743644743644777233360Thermocrinis albus DSM 14484 chromosome, complete genomehypothetical protein2e-68261
NC_013407:1205747:1216519121651912201123594Methanocaldococcus vulcanius M7, complete genomehypothetical protein1e-67259
NC_014330:609982:6197376197376224572721Brachyspira pilosicoli 95/1000 chromosome, complete genomefused endonuclease-methyltransferase2e-60234
NC_015500:2866027:2901708290170829050823375Treponema brennaborense DSM 12168 chromosome, complete genometype IIS restriction endonuclease, putative3e-60234
NC_014011:1354261:1360055136005513635013447Aminobacterium colombiense DSM 12261 chromosome, complete genomehypothetical protein9e-60233
NC_015164:29004:3813638136415703435Bacteroides salanitronis DSM 18170 chromosome, complete genomeN-6 DNA methylase9e-59229
NC_009523:379705:3830913830913865553465Roseiflexus sp. RS-1 chromosome, complete genomehypothetical protein7e-58226
NC_008554:484267:4926344926344960773444Syntrophobacter fumaroxidans MPOB, complete genomehypothetical protein2e-57225
NC_013926:1270173:1273330127333012763172988Aciduliprofundum boonei T469 chromosome, complete genomeprotein of unknown function DUF4502e-54214
NC_019757:1789237:1796916179691618000053090Cylindrospermum stagnale PCC 7417, complete genometype I restriction-modification system methyltransferase subunit2e-52208
NC_013946:415028:4218694218694261494281Meiothermus ruber DSM 1279 chromosome, complete genomehypothetical protein2e-50201
NC_014314:1230687:1237256123725612409813726Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completehypothetical protein2e-49198
NC_014934:219000:2213082213082245083201Cellulophaga algicola DSM 14237 chromosome, complete genomen-6 DNA methylase5e-44181
NC_019792:153661:1605111605111647524242Natronobacterium gregoryi SP2 chromosome, complete genomeN-6 DNA Methylase/Eco57I restriction endonuclease4e-44181
NC_009051:1118486:1143895114389511470053111Methanoculleus marisnigri JR1, complete genomeprotein of unknown function DUF4509e-43176
NC_011060:3000067:3000067300006730040834017Pelodictyon phaeoclathratiforme BU-1, complete genomehypothetical protein1e-39166
NC_015500:2866027:290507929050792905957879Treponema brennaborense DSM 12168 chromosome, complete genomeputative type IIS restriction/modification enzyme1e-33146
NC_015311:2059879:208117020811702082099930Prevotella denticola F0289 chromosome, complete genomehypothetical protein4e-33144
NC_015164:2473496:2485877248587724889423066Bacteroides salanitronis DSM 18170 chromosome, complete genomehypothetical protein9e-32140
NC_019974:1115553:1136317113631711405644248Natronococcus occultus SP4, complete genometype I restriction-modification system methyltransferase subunit1e-30136
NC_009434:3434381:3443813344381334475413729Pseudomonas stutzeri A1501, complete genomehypothetical protein1e-27126
NC_014926:1381152:1393971139397113978073837Thermovibrio ammonificans HB-1 chromosome, complete genomehypothetical protein2e-27125
NC_012225:1497934:1516857151685715198923036Brachyspira hyodysenteriae WA1, complete genomerestriction enzyme methylase subunit2e-26122
NC_018607:805966:8231478231478261793033Brachyspira pilosicoli B2904 chromosome, complete genomebifunctional endonuclease/methyltransferase9e-26120
NC_014150:2146887:2150714215071421538903177Brachyspira murdochii DSM 12563 chromosome, complete genomeprotein of unknown function DUF4502e-25119
NC_019908:21970:4149341493445313039Brachyspira pilosicoli P43/6/78 chromosome, complete genomebifunctional endonuclease/methyltransferase2e-25118
NC_020388:252500:2734882734882770723585Natronomonas moolapensis 8.8.11 complete genomeprobable restriction/modification enzyme4e-24114
NC_007426:1489677:1497341149734115011173777Natronomonas pharaonis DSM 2160, complete genomeprobable restriction/modification enzyme8e-24113
NC_014150:2146887:2162432216243221639521521Brachyspira murdochii DSM 12563 chromosome, complete genome2e-23112
NC_008639:1462000:1480653148065314845013849Chlorobium phaeobacteroides DSM 266, complete genomehypothetical protein1e-22109
NC_009076:3564500:3588455358845535928404386Burkholderia pseudomallei 1106a chromosome I, complete sequencehypothetical protein1e-22109
NC_009648:5119271:5147740514774051518104071Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeATP phosphoribosyltransferase5e-22107
NC_010831:931961:9501289501289540003873Chlorobium phaeobacteroides BS1, complete genomehypothetical protein6e-22107
NC_012918:3558500:3569102356910235707901689Geobacter sp. M21 chromosome, complete genomehypothetical protein9e-22106
NC_012028:451982:4610004610004648963897Halorubrum lacusprofundi ATCC 49239 chromosome 2, complete genomehypothetical protein1e-21106
NC_012225:1497934:1508209150820915094951287Brachyspira hyodysenteriae WA1, complete genomehypothetical protein2e-21105
NC_012731:600518:6340556340556380864032Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomeATP phosphoribosyltransferase1e-20103
NC_018939:1583653:159451315945131594800288Helicobacter pylori 26695 chromosome, complete genomehypothetical protein2e-20102
NC_000915:1583967:159449015944901594777288Helicobacter pylori 26695, complete genomehypothetical protein2e-20102
NC_008786:1298817:1303927130392713082854359Verminephrobacter eiseniae EF01-2, complete genomehypothetical protein3e-20102
NC_015510:3543352:3550469355046935551394671Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomehypothetical protein1e-1999.8
NC_006350:845513:8818058818058860494245Burkholderia pseudomallei K96243 chromosome 1, complete sequencehypothetical protein3e-1998.2
NC_014150:2146887:2158447215844721596791233Brachyspira murdochii DSM 12563 chromosome, complete genomehypothetical protein6e-1997.4
NC_019792:3219333:3227391322739132312453855Natronobacterium gregoryi SP2 chromosome, complete genomehypothetical protein8e-1997.1
NC_013730:4118355:412662741266274127370744Spirosoma linguale DSM 74, complete genometype II restriction-modification enzyme2e-1895.9
NC_015578:3914189:3925412392541239291103699Treponema primitia ZAS-2 chromosome, complete genomeDNA modification methylase3e-1895.1
NC_012796:1600600:1618327161832716199881662Desulfovibrio magneticus RS-1, complete genomemodification methylase1e-1792.8
NC_020156:2750000:2753388275338827566093222Nonlabens dokdonensis DSW-6, complete genometype II restriction enzyme, methylase8e-1790.5
NC_002689:676728:6813376813376843603024Thermoplasma volcanium GSS1, complete genomeType II restriction enzyme, methylase subunit2e-1689
NC_013966:62930:7569175691789573267Haloferax volcanii DS2 plasmid pHV4, complete sequencehypothetical protein5e-1687.8
NC_004463:925140:9283659283659322703906Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein6e-1687.4
NC_013235:508585:5085855085855126284044Nakamurella multipartita DSM 44233, complete genomehypothetical protein1e-1586.7
NC_006347:3390193:341711134171113417392282Bacteroides fragilis YCH46, complete genomehypothetical protein3e-1482
NC_010424:422029:4280804280804328254746Candidatus Desulforudis audaxviator MP104C, complete genomehypothetical protein3e-1482
NC_015865:1468689:1478571147857114823893819Thermococcus sp. 4557 chromosome, complete genomehypothetical protein3e-1481.6
NC_014365:2843126:2868884286888428729844101Desulfarculus baarsii DSM 2075 chromosome, complete genomehypothetical protein5e-1481.3
NC_014150:2146887:2165490216549021667041215Brachyspira murdochii DSM 12563 chromosome, complete genomehypothetical protein1e-1380.1
NC_018524:557666:5691695691695723783210Nocardiopsis alba ATCC BAA-2165 chromosome, complete genomeeco57I restriction-modification methylase family protein3e-1378.2
NC_013222:1536203:1543931154393115469513021Robiginitalea biformata HTCC2501, complete genometype II restriction enzyme, methylase subunit4e-1378.2
NC_011880:56543:7357773577778064230Cyanothece sp. PCC 7425 plasmid pP742501, complete sequencehypothetical protein7e-1377.4
NC_013890:191616:2058982058982092453348Dehalococcoides sp. GT chromosome, complete genomehypothetical protein6e-1377.4
NC_015577:2081196:2092758209275820959043147Treponema azotonutricium ZAS-9 chromosome, complete genomeputative type IIS restriction enzyme R and M protein (ECO57IR)9e-1377
NC_009633:3055413:3097513309751330997592247Alkaliphilus metalliredigens QYMF chromosome, complete genomehypothetical protein1e-1276.3
NC_009455:173374:1847271847271878463120Dehalococcoides sp. BAV1 chromosome, complete genomehypothetical protein3e-1275.5
NC_007645:3934239:3942388394238839466324245Hahella chejuensis KCTC 2396, complete genomeType II restriction enzyme, methylase subunit3e-1275.1
NC_015499:1097432:1117758111775811210663309Thermodesulfobium narugense DSM 14796 chromosome, complete genomehypothetical protein5e-1274.7
NC_019792:3446895:3458347345834734612862940Natronobacterium gregoryi SP2 chromosome, complete genometype I restriction-modification system methyltransferase subunit4e-1274.7
NC_014151:3663295:3666135366613536701033969Cellulomonas flavigena DSM 20109 chromosome, complete genomeputative type II DNA modification enzyme2e-1172.4
NC_014820:1517927:1527616152761615315873972Cenarchaeum symbiosum A, complete genometype II restriction enzyme, methylase subunit3e-1172
NC_011891:3369170:3379581337958133824332853Anaeromyxobacter dehalogenans 2CP-1, complete genomeprotein of unknown function DUF4503e-1171.6
NC_012030:246000:2646182646182667022085Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01, completeN-6 DNA methylase4e-1171.2
NC_012030:165071:1845441845441886714128Halorubrum lacusprofundi ATCC 49239 plasmid pHLAC01, completehypothetical protein6e-1170.9
NC_018866:1328623:1343063134306313461493087Dehalobacter sp. DCA chromosome, complete genomeType II restriction enzyme, methylase subunit7e-1170.5
NC_008782:2326439:2326439232643923289792541Acidovorax sp. JS42, complete genomehypothetical protein1e-1069.7
NC_007722:168937:1777891777891803532565Erythrobacter litoralis HTCC2594, complete genometype II restriction enzyme, methylase subunit3e-1068.6
NC_015576:808926:8261128261128286612550Mycobacterium sp. JDM601 chromosome, complete genomehypothetical protein9e-1067
NC_005125:2887319:2904118290411829084464329Gloeobacter violaceus PCC 7421, complete genomehypothetical protein1e-0966.6
NC_017281:30261:481694816948429261Campylobacter jejuni subsp. jejuni S3 chromosome, complete genometype II restriction-modification enzyme2e-0965.5
NC_015578:3371171:3379332337933233821872856Treponema primitia ZAS-2 chromosome, complete genomehypothetical protein4e-0964.7
NC_011831:547181:5734075734075760552649Chloroflexus aggregans DSM 9485, complete genomehypothetical protein4e-0964.7
NC_012470:1061392:1073624107362410765962973Streptococcus equi subsp. zooepidemicus, complete genometype II restriction enzyme-methylase1e-0863.2
NC_005090:1812833:1825548182554818273951848Wolinella succinogenes DSM 1740, complete genomehypothetical protein1e-0863.2
NC_013008:5382917:5406351540635154112854935Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein3e-0862
NC_011353:5426793:5450290545029054552244935Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein3e-0862
NC_013941:5192500:5214907521490752198414935Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein3e-0862
NC_018604:2053585:2065813206581320686502838Brachyspira pilosicoli WesB complete genomefused endonuclease-methyltransferase3e-0862
NC_015510:4065753:4074953407495340768181866Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeN-6 DNA methylase3e-0862
NC_015680:663341:6764776764776803343858Pyrococcus yayanosii CH1 chromosome, complete genomehypothetical protein9e-0860.5
NC_014150:2146887:2155160215516021564751316Brachyspira murdochii DSM 12563 chromosome, complete genome8e-0860.5
NC_008740:1459747:1477293147729314825485256Marinobacter aquaeolei VT8, complete genomehypothetical protein7e-0860.5
NC_004349:3938:3938393856501713Shewanella oneidensis MR-1 plasmid pMR-1, complete sequencetype II DNA modification methyltransferase2e-0759.3
NC_014655:424486:4443124443124461501839Leadbetterella byssophila DSM 17132 chromosome, complete genomeN-6 DNA methylase5e-0757.8
NC_010554:2646806:2713633271363327186034971Proteus mirabilis HI4320, complete genomeplasmid-related protein1e-0656.6
NC_014616:862084:8725788725788741701593Bifidobacterium bifidum S17 chromosome, complete genometype II methyltransferase1e-0656.6
NC_017243:599814:6074866074866103022817Brachyspira intermedia PWS/A chromosome, complete genomebifunctional endonuclease/methyltransferase2e-0655.8
NC_013216:1442044:1450321145032114549944674Desulfotomaculum acetoxidans DSM 771, complete genomehypothetical protein4e-0655.1
NC_013850:4829455:4841438484143848431021665Klebsiella variicola At-22 chromosome, complete genomeN-6 DNA methylase8e-0653.9