Pre_GI: BLASTP Hits

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Query: NC_017328:3935185:3957859 Shigella flexneri 2002017 chromosome, complete genome

Start: 3957859, End: 3958680, Length: 822

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:4095016:410093441009344101530597Shigella sonnei Ss046, complete genomeputative transposase2e-105381
NC_014844:2721746:272906127290612729885825Desulfovibrio aespoeensis Aspo-2 chromosome, complete genomeTnsA endonuclease1e-68259
NC_015572:4916430:493891649389164939740825Methylomonas methanica MC09 chromosome, complete genomeTnsA endonuclease4e-63241
NC_006512:2789098:281413028141302814957828Idiomarina loihiensis L2TR, complete genomeTransposon Tn7 transposition protein tnsA2e-57222
NC_009052:5089963:510264651026465103467822Shewanella baltica OS155, complete genometransposon Tn7 transposition protein TnsA2e-54213
NC_015851:89006:107839107839108693855Acidithiobacillus caldus SM-1 megaplasmid, complete sequencetransposon Tn7 transposition protein TnsA4e-51201
NC_015497:4564339:457012945701294570923795Glaciecola agarilytica 4H-3-7+YE-5 chromosome, complete genomeTnsA endonuclease8e-49194
NC_020409:1589044:159207115920711592796726Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeTransposon Tn7 transposition protein tnsA2e-48192
NC_014394:1325616:133114213311421331990849Gallionella capsiferriformans ES-2 chromosome, complete genomeTnsA endonuclease3e-39162
NC_015958:2174731:218659121865912187451861Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomeTnsA endonuclease5e-39161
NC_015740:4508375:452053845205384521173636Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, completeTnsA endonuclease1e-37156
NC_013921:1915377:192623919262391927099861Thermoanaerobacter italicus Ab9 chromosome, complete genomeTnsA endonuclease2e-36152
NC_014657:2127500:213820721382072139064858Caldicellulosiruptor owensensis OL chromosome, complete genometnsa endonuclease4e-35148
NC_010995:4525119:455082845508284551685858Cellvibrio japonicus Ueda107, complete genomeTn7-Cj, transposase protein TnsA1e-33143
NC_015942:763500:774012774012774749738Acidithiobacillus ferrivorans SS3 chromosome, complete genomeTnsA endonuclease5e-30131
NC_011206:200000:208744208744209589846Acidithiobacillus ferrooxidans ATCC 53993, complete genomeTnsA endonuclease3e-29129
NC_007492:6372900:641706364170636417950888Pseudomonas fluorescens PfO-1, complete genomehypothetical protein8e-27120
NC_010634:4463727:448754544875454488366822Yersinia pseudotuberculosis PB1/+, complete genomeTnsA endonuclease3e-25115
NC_007974:2048000:205969820596982060651954Ralstonia metallidurans CH34 chromosome 2, complete sequencehypothetical protein1e-22107
NC_009838:81913:109164109164110006843Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequenceTnsA1e-22106
NC_011748:3983432:400020340002034001045843Escherichia coli 55989, complete genomeTn7-like transposase TnsA1e-22106
CU928145:3983432:400020340002034001045843Escherichia coli 55989 chromosome, complete genomeTn7-like transposase TnsA1e-22106
NC_010501:5735656:575270557527055753604900Pseudomonas putida W619, complete genomeTnsA endonuclease2e-1892.8
NC_005773:5149768:517252451725245173330807Pseudomonas syringae pv. phaseolicola 1448A, complete genometransposon Tn7-like transposase protein A1e-1790.9
NC_010718:237962:255977255977256807831Natranaerobius thermophilus JW/NM-WN-LF, complete genomeTnsA endonuclease4e-1789
NC_010625:1602191:161389916138991614754856Burkholderia phymatum STM815 plasmid pBPHY01, complete sequence5e-1685.1
NC_009349:3396:138191381914691873Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, completeTn7-like transposition protein A1e-1170.1
NC_014118:987889:103104910310491031879831Burkholderia sp. CCGE1002 chromosome chromosome 2, completeTnsA endonuclease2e-1170.1
NC_016616:1091606:1120193112019311212421050Dechlorosoma suillum PS chromosome, complete genomeTnsA endonuclease N terminal protein2e-1170.1
NC_014394:3114648:312396531239653124861897Gallionella capsiferriformans ES-2 chromosome, complete genomeTnsA endonuclease3e-1168.9
NC_009659:3815966:383881338388133839712900Janthinobacterium sp. Marseille chromosome, complete genomeTn7-like transposition protein A3e-0962.8