Pre_GI: BLASTP Hits

Some Help

Query: NC_017328:3935185:3948143 Shigella flexneri 2002017 chromosome, complete genome

Start: 3948143, End: 3948931, Length: 789

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:4095016:411045841104584111246789Shigella sonnei Ss046, complete genomeaminoglycoside-resistance protein2e-148524
NC_009349:78000:9150491504925111008Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, completeaminoglycoside resistance protein1e-147521
NC_010410:3606826:365606936560693656899831Acinetobacter baumannii AYE, complete genomeAminoglycoside 3'-(9)-O-adenylyltransferase AADA16e-147520
NC_006856:26438:397233972340514792Salmonella enterica subsp. enterica serovar Choleraesuis straminoglycoside adenyltransferase5e-147520
NC_014924:3065430:307672030767203077511792Pseudoxanthomonas suwonensis 11-1 chromosome, complete genome3''-adenylyltransferase5e-147520
NC_010410:3606826:362149236214923622283792Acinetobacter baumannii AYE, complete genomeAminoglycoside 3'-(9)-O-adenylyltransferase AADA15e-147520
NC_009838:81913:966209662097411792Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequenceaminoglycoside resistance protein5e-147520
NC_011586:268927:314309314309315100792Acinetobacter baumannii AB0057 chromosome, complete genomeaminoglycoside resistance protein5e-147520
NC_017171:1331794:134472313447231345514792Acinetobacter baumannii MDR-ZJ06 chromosome, complete genomestreptomycin/spectinomycin adenyltransferase5e-147520
NC_017387:247462:266824266824267615792Acinetobacter baumannii TCDC-AB0715 chromosome, complete genomeaminoglycoside 3'-adenyltransferase5e-147520
NC_017387:247462:277658277658278449792Acinetobacter baumannii TCDC-AB0715 chromosome, complete genomeaminoglycoside 3'-adenyltransferase5e-147520
NC_014836:2919508:106731067311611939Desulfurispirillum indicum S5 chromosome, complete genomeadenylyltransferase3e-147520
NC_016860:4055117:407496140749614075752792Salmonella enterica subsp. enterica serovar Typhimurium straminoglycoside resistance protein2e-146518
NC_017328:1075535:110918411091841109975792Shigella flexneri 2002017 chromosome, complete genomeStreptomycin adenyltransferase2e-146518
NC_009140:121107:1258881258881268951008Salmonella enterica enterica sv Newport str. SL254, completeaminoglycoside resistance protein5e-144509
NC_006856:26438:421284212842931804Salmonella enterica subsp. enterica serovar Choleraesuis strstreptomycin 3''-adenyl transferase3e-129461
NC_011751:4992500:499488249948824995670789Escherichia coli UMN026 chromosome, complete genomeaminoglycoside resistance protein2e-82305
NC_017162:1228723:1245025124502512460561032Acinetobacter baumannii 1656-2 chromosome, complete genometransposase5e-79294
NC_008095:2011748:201305720130572013875819Myxococcus xanthus DK 1622, complete genomeputative aminoglycoside-3'-adenylyltransferase5e-71267
NC_011094:1282385:131318013131801314049870Salmonella enterica subsp. enterica serovar Schwarzengrund straminoglycoside resistance protein5e-56218
NC_017046:1277787:130344113034411304310870Salmonella enterica subsp. enterica serovar Typhimurium str. 798aminoglycoside-resistance protein1e-55216
NC_016857:1276340:130336813033681304237870Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74aminoglycoside resistance protein1e-55216
NC_016831:1083871:110951911095191110388870Salmonella enterica subsp. enterica serovar Gallinarum/pullorumaminoglycoside-resistance protein2e-55216
NC_004631:1182883:121376312137631214551789Salmonella enterica subsp. enterica serovar Typhi Ty2, completeaminoglycoside-resistance protein3e-55215
NC_016832:1182496:121273512127351213523789Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Streptomycin 3''-adenylyltransferase3e-55215
NC_003197:1320861:134659613465961347384789Salmonella typhimurium LT2, complete genomeaminoglycoside adenyltransferase2e-55215
NC_016810:1276340:130344913034491304237789Salmonella enterica subsp. enterica serovar Typhimurium straminoglycoside-resistance protein2e-55215
NC_016856:1326503:135657113565711357359789Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Saminoglycoside resistance protein2e-55215
NC_016863:1277652:130476113047611305549789Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1aminoglycoside resistance protein2e-55215
NC_015761:1181186:122391612239161224704789Salmonella bongori NCTC 12419, complete genomeaminoglycoside-resistance protein9e-55213
NC_009706:2673906:268824126882412689059819Clostridium kluyveri DSM 555 chromosome, complete genomestreptomycin 3''-adenylyltransferase7e-47187
NC_011837:2605409:261974426197442620562819Clostridium kluyveri NBRC 12016, complete genomehypothetical protein7e-47187
NC_007907:4956500:496937149693714970153783Desulfitobacterium hafniense Y51, complete genomehypothetical protein7e-45181
NC_011830:1037520:104963110496311050413783Desulfitobacterium hafniense DCB-2, complete genome3''-adenylyltransferase1e-44180
NC_010520:3674883:367988136798813680666786Clostridium botulinum A3 str. Loch Maree, complete genome2e-42172
NC_003888:4750489:476970447697044770477774Streptomyces coelicolor A3(2), complete genomenucleotidyltransferase3e-38159
NC_017162:1228723:124817012481701248337168Acinetobacter baumannii 1656-2 chromosome, complete genomeStreptomycin/spectinomycin adenyltransferase2e-22106