Pre_GI: BLASTP Hits

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Query: NC_017328:3088907:3141516 Shigella flexneri 2002017 chromosome, complete genome

Start: 3141516, End: 3141983, Length: 468

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004337:3049118:310314931031493103616468Shigella flexneri 2a str. 301, complete genomehypothetical protein1e-73274
NC_008800:3955284:396228639622863962708423Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,putative tight adherance operon protein6e-1683.2
NC_015224:3820338:384059638405963840982387Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,putative tight adherance operon protein9e-1682.4
NC_009708:692508:707636707636708034399Yersinia pseudotuberculosis IP 31758 chromosome, complete genometype IV prepilin peptidase family protein3e-1580.9
NC_013416:668152:686415686415686843429Aggregatibacter actinomycetemcomitans D11S-1, complete genomeTadV1e-1478.6
NC_016513:974402:992675992675993001327Aggregatibacter actinomycetemcomitans ANH9381 chromosome, completeflp operon protein B2e-1271.2
NC_008150:3430000:343670534367053437127423Yersinia pestis Antiqua, complete genomehypothetical protein6e-1269.7
NC_008149:650706:665824665824666246423Yersinia pestis Nepal516, complete genomemembrane protein6e-1269.7
NC_005810:3333000:334822933482293348651423Yersinia pestis biovar Microtus str. 91001, complete genomehypothetical protein6e-1269.7
NC_004088:3859173:386582338658233866245423Yersinia pestis KIM, complete genomehypothetical protein6e-1269.7
NC_003143:741169:756287756287756709423Yersinia pestis CO92, complete genomehypothetical protein6e-1269.7
NC_009381:522731:537848537848538270423Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein6e-1269.7
NC_014029:792719:807831807831808253423Yersinia pestis Z176003 chromosome, complete genomehypothetical protein6e-1269.7
NC_017154:734875:749994749994750416423Yersinia pestis D106004 chromosome, complete genomehypothetical protein6e-1269.7
NC_017160:737000:752172752172752594423Yersinia pestis D182038 chromosome, complete genomehypothetical protein6e-1269.7
NC_017168:341233:348593348593349015423Yersinia pestis A1122 chromosome, complete genomehypothetical protein6e-1269.7
NC_017265:3724500:373118337311833731605423Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,Type IV prepilin peptidase TadV/CpaA6e-1269.7
NC_012913:167034:182027182027182455429Aggregatibacter aphrophilus NJ8700, complete genomeTadV2e-1168.2
NC_006155:3992818:400457340045734004995423Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein3e-1167.8
NC_010634:3905369:391606439160643916486423Yersinia pseudotuberculosis PB1/+, complete genomepeptidase A24A prepilin type IV2e-1167.8
NC_013716:4306695:437847343784734378916444Citrobacter rodentium ICC168, complete genomeputative prepilin peptidase TadV2e-1064.7
NC_002940:1065246:107040710704071070841435Haemophilus ducreyi 35000HP, complete genomeflp operon protein B9e-1062.8
NC_004605:741000:750211750211750654444Vibrio parahaemolyticus RIMD 2210633 chromosome II, completehypothetical protein5e-0960.1
NC_010465:733916:748063748063748485423Yersinia pseudotuberculosis YPIII, complete genomepeptidase A24A prepilin type IV2e-0858.2
NC_010159:259695:266486266486266767282Yersinia pestis Angola, complete genometype IV prepilin peptidase family3e-0857.4