Pre_GI: BLASTP Hits

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Query: NC_017328:1075535:1119452 Shigella flexneri 2002017 chromosome, complete genome

Start: 1119452, End: 1120657, Length: 1206

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011749:34056:4355043550448031254Escherichia coli UMN026 plasmid p1ESCUM, complete sequencetetracycline efflux transporter0724
NC_011748:4950723:4974007497400749752601254Escherichia coli 55989, complete genomeTetracycline resistance protein, class B (TETA(B) ) (Metal-tetracycline/H(+) antiporter)0724
CU928145:4950723:4974007497400749752601254Escherichia coli 55989 chromosome, complete genomeTetracycline resistance protein, class B (TETA(B) ) (Metal-tetracycline/H(+) antiporter)0724
NC_003384:157158:1779351779351791401206Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmidtetracycline resistance protein0723
NC_011083:4547825:4606940460694046081451206Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,tetracycline resistance protein, class B0723
NC_013365:92973:9669896698979031206Escherichia coli O111:H- str. 11128 plasmid pO111_1, completetetracycline resistance protein TetB0723
NC_016860:4055117:4063086406308640642911206Salmonella enterica subsp. enterica serovar Typhimurium strtetracycline resistance protein0723
NC_017328:1075535:1106058110605811072631206Shigella flexneri 2002017 chromosome, complete genomeTetracycline resistance protein, class B (TetA(B)) (Metal- tetracycline/H(+) antiporter)0723
NC_020418:448687:4588664588664600711206Morganella morganii subsp. morganii KT, complete genomemajor facilitator superfamily protein0722
NC_017171:280762:2856542856542868891236Acinetobacter baumannii MDR-ZJ06 chromosome, complete genomeTetracycline resistance protein, class B (TETA(B) ) (Metal-tetracycline/H(+) antiporter)0721
NC_017387:247462:2876772876772888701194Acinetobacter baumannii TCDC-AB0715 chromosome, complete genometetracycline resistance protein, class G (TETA(G))0704
NC_010939:405477:4158074158074169461140Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeTetracycline resistance protein, class G0684
NC_010519:1963256:1979596197959619807981203Haemophilus somnus 2336 chromosome, complete genomemajor facilitator transporter4e-97355
NC_010410:3606826:3671432367143236726071176Acinetobacter baumannii AYE, complete genomeTetracycline resistance protein, class G (TETA(G))7e-97354
NC_009349:3396:4109410953261218Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, completetetracycline resistance protein TetA(E)1e-96353
NC_009838:81913:8960389603907931191Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequenceTetA2e-81303
NC_012668:3037345:3048365304836530496391275Vibrio cholerae MJ-1236 chromosome 1, complete sequenceTetA3e-80298
NC_010410:3606826:3641859364185936431331275Acinetobacter baumannii AYE, complete genomeTetracycline resistance protein, class A (TETA(A))3e-80298
NC_011586:268927:2922162922162933431128Acinetobacter baumannii AB0057 chromosome, complete genometetracycline resistance protein, class A1e-75283
NC_015277:380624:3984053984053996131209Sphingobacterium sp. 21 chromosome, complete genomemajor facilitator superfamily MFS_14e-45182
NC_015161:2060369:2064492206449220657331242Deinococcus proteolyticus MRP chromosome, complete genomemajor facilitator superfamily MFS_12e-44180
NC_005823:2840000:2861270286127028624991230Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130permease3e-44179
NC_013062:627000:6750276750276762621236Flavobacteriaceae bacterium 3519-10, complete genomeTetracycline efflux protein TetA4e-39162
NC_003919:5056650:5075447507544750767121266Xanthomonas axonopodis pv. citri str. 306, complete genometetracycline-efflux transporter8e-34145
NC_013766:906550:9065509065509077701221Listeria monocytogenes 08-5578 chromosome, complete genomehypothetical protein6e-28125
NC_003210:870587:8705878705878718071221Listeria monocytogenes EGD-e, complete genomehypothetical protein6e-28125
NC_009483:936000:9406069406069418441239Geobacter uraniireducens Rf4 chromosome, complete genomemajor facilitator transporter8e-26118
NC_012032:448161:4525394525394537501212Chloroflexus sp. Y-400-fl, complete genomemajor facilitator superfamily MFS_12e-25116
NC_014041:3662906:3676002367600236772161215Zunongwangia profunda SM-A87 chromosome, complete genomemultidrug-efflux transporter4e-24112
NC_005126:2222000:2225254222525422265191266Photorhabdus luminescens subsp. laumondii TTO1, complete genomehypothetical protein2e-22107
NC_012962:3060063:3078973307897330802381266Photorhabdus asymbiotica, complete genomesimilar to tetracycline-efflux transporter6e-22105
NC_014976:684000:7008387008387020401203Bacillus subtilis BSn5 chromosome, complete genomeefflux transporter5e-21102
NC_009091:1598044:1613061161306116143291269Prochlorococcus marinus str. MIT 9301, complete genomemultidrug efflux transporter, MFS family1e-20101
NC_017195:2498113:2523659252365925248611203Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completemultidrug resistance protein 21e-20101
NC_019896:1483073:1508442150844215096441203Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completeMultidrug resistance protein 26e-2099
NC_000964:2702376:2716199271619927174011203Bacillus subtilis subsp. subtilis str. 168, complete genomemultidrug-efflux transporter6e-2098.6
NC_013222:299683:3503113503113515251215Robiginitalea biformata HTCC2501, complete genomemultidrug-efflux transporter1e-1997.8
NC_016047:2658000:2682573268257326837751203Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, completemultidrug resistance protein 21e-1997.8
NC_010175:448020:4523984523984536081211Chloroflexus aurantiacus J-10-fl, complete genome2e-1997.4
NC_020244:2509000:2531624253162425328261203Bacillus subtilis XF-1, complete genomeefflux transporter2e-1997.1
NC_014759:2438492:2449510244951024507451236Marivirga tractuosa DSM 4126 chromosome, complete genomemajor facilitator superfamily mfs_11e-1894.7
NC_003909:927955:9473589473589485601203Bacillus cereus ATCC 10987, complete genomemultidrug resistance protein2e-1790.5
NC_015761:1488807:1498916149891615001541239Salmonella bongori NCTC 12419, complete genomemultidrug efflux protein5e-1789
NC_002932:937157:9410909410909423581269Chlorobium tepidum TLS, complete genomedrug resistance protein, putative5e-1789
UCMB5137:1:2696926969281711203Bacillus atrophaeus UCMB-5137efflux transporter6e-1685.5
NC_003197:1611302:1621409162140916226501242Salmonella typhimurium LT2, complete genomeputative multidrug efflux protein9e-1685.1
NC_016810:1576636:1578262157826215795031242Salmonella enterica subsp. enterica serovar Typhimurium strputative multidrug efflux protein9e-1685.1
NC_016856:1621279:1631386163138616326271242Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative multidrug efflux protein9e-1685.1
NC_016857:1576636:1578262157826215795031242Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative multidrug efflux protein9e-1685.1
NC_016860:1614280:1619099161909916203401242Salmonella enterica subsp. enterica serovar Typhimurium strputative multidrug efflux protein9e-1685.1
NC_016863:1575488:1579577157957715808181242Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative multidrug efflux protein9e-1685.1
NC_017046:1574057:1578146157814615793871242Salmonella enterica subsp. enterica serovar Typhimurium str. 798multidrug efflux protein9e-1685.1
NC_016641:5671186:5699024569902457002201197Paenibacillus terrae HPL-003 chromosome, complete genomemajor facilitator superfamily protein2e-1584
NC_003198:1463253:1472365147236514736061242Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative multidrug efflux protein2e-1583.6
NC_014479:2505823:2524216252421625254181203Bacillus subtilis subsp. spizizenii str. W23 chromosome, completeefflux transporter3e-1583.2
NC_011094:1584038:1588857158885715900981242Salmonella enterica subsp. enterica serovar Schwarzengrund strmajor facilitator superfamily protein4e-1582.8
NC_011149:1578451:1592785159278515940261242Salmonella enterica subsp. enterica serovar Agona str. SL483,major facilitator superfamily MFS_11e-1481.3
NC_009481:2081500:2086183208618320873761194Synechococcus sp. WH 7803 chromosome, complete genomemajor facilitator superfamily permease1e-1377.8
NC_005042:1719055:1719055171905517203141260Prochlorococcus marinus subsp. marinus str. CCMP1375, completePermease of the major facilitator superfamily1e-1275.1
NC_016935:2567039:2618956261895626201641209Paenibacillus mucilaginosus 3016 chromosome, complete genomemultidrug resistance protein1e-1274.3
NC_005070:2374850:2395742239574223970401299Synechococcus sp. WH 8102, complete genomemultidrug efflux transporter, MFS family6e-1272.4
NC_015690:2039215:2069428206942820706361209Paenibacillus mucilaginosus KNP414 chromosome, complete genomemultidrug resistance protein8e-1272
NC_020291:1045058:1045058104505810462511194Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomemultidrug resistance protein MdtG2e-1067.4
NC_017192:714346:7143467143467156561311Arcobacter sp. L, complete genometransport protein2e-0963.5
NC_018868:1960542:2009845200984520111161272Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomearabinose efflux permease family protein2e-0963.5
NC_012779:2127542:2135634213563421369981365Edwardsiella ictaluri 93-146, complete genomehypothetical protein4e-0962.8
NC_013504:447891:4623544623544638111458Lactobacillus johnsonii FI9785 chromosome, complete genomemajor facilitator superfamily permease6e-0962.4
NC_005362:550823:5652845652845667411458Lactobacillus johnsonii NCC 533, complete genomemajor facilitator superfamily permease7e-0962
NC_015387:2072237:2085508208550820867041197Marinithermus hydrothermalis DSM 14884 chromosome, complete genomemajor facilitator superfamily MFS_18e-0962
NC_020291:1149887:1166431116643111678881458Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomearabinose efflux permease family protein3e-0860.1
NC_018866:154252:1679721679721691471176Dehalobacter sp. DCA chromosome, complete genomePermease, MDR related, probably tetracycline resistance protein4e-0859.7
NC_007348:752692:7571607571607584101251Ralstonia eutropha JMP134 chromosome 2, complete sequenceMajor facilitator superfamily MFS_14e-0859.7
NC_002528:505951:5113765113765125481173Buchnera aphidicola str. APS (Acyrthosiphon pisum), completehypothetical protein4e-0859.7
NC_017253:509494:5122785122785134501173Buchnera aphidicola str. JF99 (Acyrthosiphon pisum) chromosome,putative molybdenum cofactor-binding oxidoreductase (YagR)4e-0859.7
NC_018876:863314:8633148633148646391326Methanolobus psychrophilus R15 chromosome, complete genomedrug-efflux transporter5e-0859.3
NC_008530:469802:4842704842704857331464Lactobacillus gasseri ATCC 33323, complete genomePermease of the major facilitator superfamily5e-0859.3
NC_015726:406450:4119664119664132161251Cupriavidus necator N-1 chromosome 1, complete sequencemajor facilitator superfamily MFS sugar family1e-0758.2
NC_008258:401786:4128234128234141931371Shigella flexneri 5 str. 8401, complete genomeputative transport protein1e-0758.2
NC_015663:2694373:2722315272231527236821368Enterobacter aerogenes KCTC 2190 chromosome, complete genomemajor facilitator family transport protein2e-0757.4
NC_008782:1566172:1566172156617215674971326Acidovorax sp. JS42, complete genomemajor facilitator superfamily MFS_12e-0757.4
NC_020181:2714559:2722094272209427234611368Enterobacter aerogenes EA1509E, complete genomePutative transport protein2e-0757.4
NC_013665:2132000:2133936213393621351441209Methanocella paludicola SANAE, complete genomeMFS transporter2e-0757.4
NC_004757:2657490:2677645267764526790031359Nitrosomonas europaea ATCC 19718, complete genomeMFS family transporter2e-0757
NC_019977:1621939:1637162163716216384751314Methanomethylovorans hollandica DSM 15978, complete genomearabinose efflux permease family protein4e-0756.6
NC_015422:3493396:3507498350749835087781281Alicycliphilus denitrificans K601 chromosome, complete genomemajor facilitator superfamily protein3e-0756.6
NC_010322:583842:5873435873435887371395Pseudomonas putida GB-1 chromosome, complete genomemajor facilitator superfamily transporter5e-0755.8
NC_006177:2883476:2885225288522528864451221Symbiobacterium thermophilum IAM 14863, complete genomemultidrug efflux protein5e-0755.8
NC_015602:117939:1500791500791515391461Lactobacillus kefiranofaciens ZW3 chromosome, complete genomeMFS family major facilitator transporter6e-0755.8
NC_002516:4747154:4747154474715447485421389Pseudomonas aeruginosa PAO1, complete genomeprobable major facilitator superfamily (MFS) transporter8e-0755.5
NC_020829:636773:6398226398226412101389Pseudomonas denitrificans ATCC 13867, complete genomemajor facilitator superfamily transporter7e-0755.5
NC_005957:2196000:2200164220016422013091146Bacillus thuringiensis serovar konkukian str. 97-27, completeGlpT transporter; possible quinolone resistence NorA protein6e-0755.5
NC_014335:2151404:2156801215680121579461146Bacillus cereus biovar anthracis str. CI chromosome, completeglycerol-3-phosphate transporter6e-0755.5
NC_011773:2239753:2244463224446322456081146Bacillus cereus AH820 chromosome, complete genomemajor facilitator family transporter6e-0755.5
NC_017259:480656:4902834902834913711089Buchnera aphidicola str. Ua (Uroleucon ambrosiae) chromosome,MFS transporter6e-0755.5
NC_011832:1399446:1399446139944614006481203Candidatus Methanosphaerula palustris E1-9c, complete genomemajor facilitator superfamily MFS_19e-0755.1
NC_015138:5342473:5342473534247353437351263Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completemajor facilitator superfamily protein9e-0755.1
NC_007614:2517226:2528869252886925302541386Nitrosospira multiformis ATCC 25196 chromosome 1, completemajor facilitator superfamily MFS_11e-0655.1
NC_006350:595893:6002606002606014471188Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative transporter protein1e-0654.7
NC_011658:2275864:2279953227995322810981146Bacillus cereus AH187 chromosome, complete genomemajor facilitator family transporter1e-0654.7
NC_007434:788500:7913307913307928021473Burkholderia pseudomallei 1710b chromosome I, complete sequencemajor facilitator family transporter1e-0654.7
NC_015556:717993:7377657377657391531389Pseudomonas fulva 12-X chromosome, complete genomemajor facilitator superfamily MFS_11e-0654.7
NC_008011:663958:6852276852276864141188Lawsonia intracellularis PHE/MN1-00, complete genomePermeases of the major facilitator superfamily1e-0654.7
NC_014761:1981435:1999855199985520010391185Oceanithermus profundus DSM 14977 chromosome, complete genomemajor facilitator superfamily mfs_12e-0654.3
NC_007355:970670:9840039840039853521350Methanosarcina barkeri str. fusaro chromosome 1, complete sequenceclass H tetracycline resistance efflux protein2e-0654.3
NC_015214:1700000:1705157170515717066171461Lactobacillus acidophilus 30SC chromosome, complete genomePermease of the major facilitator superfamily protein1e-0654.3
NC_014724:1731238:1736389173638917378491461Lactobacillus amylovorus GRL 1112 chromosome, complete genomePermease of the major facilitator superfamily protein1e-0654.3
NC_000916:31459:6452164521659001380Methanothermobacter thermautotrophicus str. Delta H, completemultidrug transporter homolog3e-0653.5
NC_005773:5149768:5207052520705252084521401Pseudomonas syringae pv. phaseolicola 1448A, complete genomemajor facilitator family transporter3e-0653.5
NC_014171:2177353:2183019218301921841641146Bacillus thuringiensis BMB171 chromosome, complete genomequinolone resistance protein NorA3e-0653.5
NC_011725:2206000:2210875221087522120201146Bacillus cereus B4264 chromosome, complete genomemajor facilitator family transporter3e-0653.5
NC_012472:2240000:224429122442912244701411Bacillus cereus 03BB102, complete genomemajor facilitator family transporter3e-0653.5
NC_010080:1685280:1689812168981216912721461Lactobacillus helveticus DPC 4571, complete genomeMultidrug transporter3e-0653.5
NC_011772:2166000:2170387217038721715861200Bacillus cereus G9842, complete genomemajor facilitator family transporter2e-0653.5
NC_014106:1658103:1662321166232116637811461Lactobacillus crispatus ST1, complete genomePermease of the major facilitator superfamily2e-0653.5
NC_007530:2175967:2180632218063221817771146Bacillus anthracis str. 'Ames Ancestor', complete genomemajor facilitator family transporter4e-0653.1
NC_005945:2175871:2180614218061421817591146Bacillus anthracis str. Sterne, complete genomemajor facilitator family transporter4e-0653.1
NC_003997:2175843:2180508218050821816531146Bacillus anthracis str. Ames, complete genomemajor facilitator family transporter4e-0653.1
NC_012659:2175867:2180532218053221816771146Bacillus anthracis str. A0248, complete genomemajor facilitator family transporter4e-0653.1
NC_013741:809030:8126488126488137301083Archaeoglobus profundus DSM 5631, complete genomemajor facilitator superfamily MFS_14e-0652.8
NC_016641:4653889:4660594466059446618411248Paenibacillus terrae HPL-003 chromosome, complete genomemajor facilitator superfamily protein5e-0652.8
NC_010682:288415:2915222915222926851164Ralstonia pickettii 12J chromosome 1, complete sequencemajor facilitator superfamily MFS_15e-0652.4
NC_007005:5367454:5383101538310153844951395Pseudomonas syringae pv. syringae B728a, complete genomeGeneral substrate transporter:Major facilitator superfamily7e-0652