Pre_GI: BLASTP Hits

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Query: NC_017328:1075535:1089032 Shigella flexneri 2002017 chromosome, complete genome

Start: 1089032, End: 1089595, Length: 564

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections. This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. Human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. Extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010498:2278306:229595022959502296513564Escherichia coli SMS-3-5, complete genomehypothetical protein3e-107386
NC_013353:3853082:388325738832573883820564Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein4e-107386
NC_011601:1114104:112681211268121127375564Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein4e-107386
AP010958:3853082:388325738832573883820564Escherichia coli O103:H2 str. 12009 DNA, complete genomeconserved predicted protein4e-107386
NC_004431:1119700:113536811353681135961594Escherichia coli CFT073, complete genomehypothetical protein4e-104376
NC_011745:291422:303545303545304108564Escherichia coli ED1a chromosome, complete genomehypothetical protein2e-103374
NC_002655:1448605:146186514618651462428564Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-102371
NC_002695:1364833:137809313780931378656564Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein2e-102371
NC_002655:1053082:106625810662581066821564Escherichia coli O157:H7 EDL933, complete genomehypothetical protein2e-102371
NC_013361:1284579:129868212986821299245564Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein2e-102371
NC_007946:1073135:108878510887851089378594Escherichia coli UTI89, complete genomehypothetical protein2e-100364
NC_011353:1307106:132171513217151322242528Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein4e-95346
NC_013008:1307392:132200113220011322528528Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein4e-95346
NC_013364:1257801:127193812719381272465528Escherichia coli O111:H- str. 11128, complete genomehypothetical protein4e-95346
NC_004431:279868:285387285387285986600Escherichia coli CFT073, complete genomehypothetical protein1e-66252
NC_017328:3088907:311800831180083118607600Shigella flexneri 2002017 chromosome, complete genomehypothetical protein4e-66250
NC_004337:3049118:307696130769613077560600Shigella flexneri 2a str. 301, complete genomehypothetical protein4e-66250
NC_004741:3041294:306914030691403069739600Shigella flexneri 2a str. 2457T, complete genomehypothetical protein4e-66250
NC_009800:349592:355726355726356325600Escherichia coli HS, complete genomehypothetical protein4e-66250
NC_011283:4966471:500459950045995005177579Klebsiella pneumoniae 342 chromosome, complete genomehypothetical protein3e-34144
NC_011415:308825:316315316315316893579Escherichia coli SE11 chromosome, complete genomehypothetical protein1e-33142
NC_012917:3241196:325916132591613259742582Pectobacterium carotovorum subsp. carotovorum PC1, complete genomehypothetical protein4e-32137
NC_014618:4114004:413312841331284133709582Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein3e-31134
NC_010465:3431500:343178834317883432375588Yersinia pseudotuberculosis YPIII, complete genomehypothetical protein1e-29129
NC_015663:549425:569816569816570412597Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein3e-28124
NC_011083:4547825:457880445788044579370567Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein3e-27121
NC_015663:1:262252622526863639Enterobacter aerogenes KCTC 2190 chromosome, complete genomehypothetical protein4e-27120
NC_011750:4390000:439527743952774395843567Escherichia coli IAI39 chromosome, complete genomehypothetical protein4e-27120
NC_008253:3941938:397397239739723974538567Escherichia coli 536, complete genomehypothetical protein4e-27120
NC_013353:5272863:528136552813655281940576Escherichia coli O103:H2 str. 12009, complete genomehypothetical protein2e-26118
AP010958:5272863:528136552813655281940576Escherichia coli O103:H2 str. 12009 DNA, complete genomehypothetical protein2e-26118
NC_011748:4950723:496683549668354967302468Escherichia coli 55989, complete genomehypothetical protein2e-22105
CU928145:4950723:496683549668354967302468Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein2e-22105
NC_011740:2859933:286179828617982862229432Escherichia fergusonii ATCC 35469, complete genomehypothetical protein7e-22103
NC_016612:2009927:203945420394542039843390Klebsiella oxytoca KCTC 1686 chromosome, complete genomehypothetical protein6e-21100
NC_017187:814940:820801820801821397597Arcobacter butzleri ED-1, complete genomehypothetical protein1e-1169.3
NC_020541:2769419:2778153277815327793971245Rhodanobacter sp. 2APBS1, complete genomeProtein of unknown function (DUF3296)5e-1063.9
NC_013446:1648556:170148517014851702441957Comamonas testosteroni CNB-2, complete genomehypothetical protein YfreA_010038733e-0961.2
NC_017506:1100679:111187411118741112836963Marinobacter adhaerens HP15 chromosome, complete genomehypothetical protein8e-0960.1
NC_018012:598724:6230386230386241741137Thiocystis violascens DSM 198 chromosome, complete genomehypothetical protein2e-0858.9
NC_014153:3084356:3101672310167231029371266Thiomonas intermedia K12 chromosome, complete genomehypothetical protein2e-0858.5
NC_009439:1297851:130712413071241308068945Pseudomonas mendocina ymp, complete genomehypothetical protein3e-0858.2
NC_009138:467268:4790134790134801641152Herminiimonas arsenicoxydans, complete genomehypothetical protein1e-0756.2
CP002516:44744:5582555825568561032Escherichia coli KO11, complete genomehypothetical protein2e-0755.5
CP002185:4035502:4049217404921740502481032Escherichia coli W, complete genomehypothetical protein2e-0755.5
NC_016902:44744:5582555825568561032Escherichia coli KO11FL chromosome, complete genomehypothetical protein2e-0755.5
NC_016147:2337244:2359609235960923608951287Pseudoxanthomonas spadix BD-a59 chromosome, complete genomehypothetical protein2e-0755.5
NC_013971:3296272:330693333069333307163231Erwinia amylovora ATCC 49946 chromosome, complete genomehypothetical protein5e-0753.9
NC_008542:197500:2068952068952081031209Burkholderia cenocepacia HI2424 chromosome 1, complete sequencehypothetical protein2e-0652
NC_011000:1216430:1228249122824912294481200Burkholderia cenocepacia J2315 chromosome 1, complete sequencehypothetical protein8e-0650.1