Pre_GI: BLASTN Hits

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Query: NC_017249:5255967 Bradyrhizobium japonicum USDA 6, complete genome

Start: 5255967, End: 5281099, Length: 25133

Host Lineage: Bradyrhizobium japonicum; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This nitrogen-fixing bacterium develops a symbiotic relationship with the soybean plant Glycine max and is related to other N2-fixing Rhizobia which are symbiotic with legumes. The bacterium establishes itself in a root nodule which provides a protective environment for the organism to live while the bacterium provides the plant cell with nitrogen. This is an agriculturally important symbiotic relationship as it obviates the need for expensive and environmentally damaging fertilizer.Genes that code for proteins involved in root nodulation are carried on the chromosome. The production of the nodulation signal, lipochitin, is directed by genes which are turned on in the presence of plant flavonoid compounds. The bacteria are endocytosed into a cortical cell, and are enclosed within a membrane bound organelle termed the symbiosome.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004463:90313319031331904979018460Bradyrhizobium japonicum USDA 110, complete genome0860BLASTN svgBLASTP svg
NC_004463:90872909087290911099923710Bradyrhizobium japonicum USDA 110, complete genome5e-48200BLASTN svgBLASTP svg
NC_004463:17725411772541179709924559Bradyrhizobium japonicum USDA 110, complete genome5e-48200BLASTN svgBLASTP svg
NC_015684:2033985*2033985205409920115Oligotropha carboxidovorans OM5 chromosome, complete genome1e-27133BLASTN svgBLASTP svg
NC_011386:2073726*2073726211598742262Oligotropha carboxidovorans OM5, complete genome1e-27133BLASTN svgBLASTP svg
NC_010172:4064087*4064087410309939013Methylobacterium extorquens PA1, complete genome4e-21111BLASTN svgBLASTP svg
NC_010725:4219500*4219500425012730628Methylobacterium populi BJ001, complete genome4e-21111BLASTN svgBLASTP svg
NC_011894:6888562*6888562695715868597Methylobacterium nodulans ORS 2060, complete genome4e-21111BLASTN svgBLASTP svg
NC_012846:1147000*1147000116490817909Bartonella grahamii as4aup, complete genome6e-20107BLASTN svgBLASTP svg
NC_005956:1019788*1019788103773717950Bartonella henselae str. Houston-1, complete genome6e-20107BLASTN svgBLASTP svg
NC_002678:34199634199636093318938Mesorhizobium loti MAFF303099, complete genome3e-18101BLASTN svgBLASTP svg
NC_015186:347346*34734637448527140Acidiphilium multivorum AIU301, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_014923:3968000*3968000399264624647Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete5e-1487.7BLASTN svgBLASTP svg
NC_007947:1556437*1556437158119324757Methylobacillus flagellatus KT, complete genome5e-1487.7BLASTN svgBLASTP svg
NC_012489:1797032*1797032181538418353Gemmatimonas aurantiaca T-27, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_010170:1661915*1661915168523723323Bordetella petrii, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_003197:1170746*1170746119097320228Salmonella typhimurium LT2, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_006511:1808815*1808815183245923645Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC8e-1073.8BLASTN svgBLASTP svg
NC_008322:1898000*1898000192173523736Shewanella sp. MR-7, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_008577:1885809*1885809190718721379Shewanella sp. ANA-3 chromosome 1, complete sequence8e-1073.8BLASTN svgBLASTP svg
NC_010067:1829041*1829041185794928909Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete8e-1073.8BLASTN svgBLASTP svg
NC_010102:2020762*2020762204160320842Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,8e-1073.8BLASTN svgBLASTP svg
NC_011083:1173802*1173802119655222751Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,8e-1073.8BLASTN svgBLASTP svg
NC_011149:1035990*1035990106096324974Salmonella enterica subsp. enterica serovar Agona str. SL483,8e-1073.8BLASTN svgBLASTP svg
NC_013716:1138441*1138441116841529975Citrobacter rodentium ICC168, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_005071:866468*86646888559919132Prochlorococcus marinus str. MIT 9313, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_007712:1712667*1712667173153718871Sodalis glossinidius str. 'morsitans', complete genome3e-0971.9BLASTN svgBLASTP svg
NC_008820:1197898*1197898122067422777Prochlorococcus marinus str. MIT 9303, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_012880:31252613125261315478529525Dickeya dadantii Ech703, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_013421:30939953093995311483420840Pectobacterium wasabiae WPP163, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_020181:2097066*2097066212464227577Enterobacter aerogenes EA1509E, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_002947:4484824*4484824451609931276Pseudomonas putida KT2440, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_003902:1858349*1858349191581657468Xanthomonas campestris pv. campestris str. ATCC 33913, complete1e-0869.9BLASTN svgBLASTP svg
NC_008027:23316172331617235762526009Pseudomonas entomophila L48, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009512:21086862108686214231433629Pseudomonas putida F1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_012779:20645822064582209112726546Edwardsiella ictaluri 93-146, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015566:3659318*3659318367796918652Serratia sp. AS12 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015733:3736104*37361043837697101594Pseudomonas putida S16 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_016010:1822212*1822212190411881907Xanthomonas axonopodis pv. citrumelo F1 chromosome, complete1e-0869.9BLASTN svgBLASTP svg
NC_003198:1078113*1078113110191423802Salmonella enterica subsp. enterica serovar Typhi str. CT18,5e-0867.9BLASTN svgBLASTP svg
NC_004631:1881214*1881214190534324130Salmonella enterica subsp. enterica serovar Typhi Ty2, complete5e-0867.9BLASTN svgBLASTP svg
NC_010674:1*12076220762Clostridium botulinum B str. Eklund 17B, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_014393:19279*192794462325345Clostridium cellulovorans 743B chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_015968:16188621618862164127522414Enterobacter asburiae LF7a chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_020291:1*12890828908Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genome5e-0867.9BLASTN svgBLASTP svg
NC_011027:1488455*1488455150948721033Chlorobaculum parvum NCIB 8327, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_004129:43333024333302435159918298Pseudomonas fluorescens Pf-5, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_003869:14153*141533317319021Thermoanaerobacter tengcongensis MB4, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_014220:2398334*2398334242099922666Syntrophothermus lipocalidus DSM 12680 chromosome, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_011296:102650*10265012914226493Thermodesulfovibrio yellowstonii DSM 11347, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013889:1623697*1623697165176828072Thioalkalivibrio sp. K90mix chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014152:1*13408834088Thermincola sp. JR, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_014761:1196669*1196669122024823580Oceanithermus profundus DSM 14977 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015275:3594890*3594890363588740998Clostridium lentocellum DSM 5427 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_015275:566000*56600059144025441Clostridium lentocellum DSM 5427 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004463:84010608401060845309952040Bradyrhizobium japonicum USDA 110, complete genome3e-0661.9BLASTN svgBLASTP svg