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Query: NC_017249:4365935:4384007 Bradyrhizobium japonicum USDA 6, complete genome

Start: 4384007, End: 4385176, Length: 1170

Host Lineage: Bradyrhizobium japonicum; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This nitrogen-fixing bacterium develops a symbiotic relationship with the soybean plant Glycine max and is related to other N2-fixing Rhizobia which are symbiotic with legumes. The bacterium establishes itself in a root nodule which provides a protective environment for the organism to live while the bacterium provides the plant cell with nitrogen. This is an agriculturally important symbiotic relationship as it obviates the need for expensive and environmentally damaging fertilizer.Genes that code for proteins involved in root nodulation are carried on the chromosome. The production of the nodulation signal, lipochitin, is directed by genes which are turned on in the presence of plant flavonoid compounds. The bacteria are endocytosed into a cortical cell, and are enclosed within a membrane bound organelle termed the symbiosome.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_012988:1459961:1493218149321814944381221Methylobacterium extorquens DM4, complete genomesignal transduction histidine kinase2e-42173
NC_010725:3961981:3974007397400739752271221Methylobacterium populi BJ001, complete genomesignal transduction histidine kinase3e-42172
NC_004463:7683426:7696203769620376974081206Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein3e-38159
NC_017249:7917586:7924527792452779257231197Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein2e-36153
NC_004463:2344128:2356412235641223576561245Bradyrhizobium japonicum USDA 110, complete genomehypothetical protein2e-36153
NC_007925:3911323:3923391392339139246081218Rhodopseudomonas palustris BisB18, complete genomesignal transduction histidine kinase4e-36152
NC_017249:2073558:2084025208402520852211197Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein2e-20100
NC_009464:2881771:2892338289233828942661929Uncultured methanogenic archaeon RC-I, complete genomepredicted signal transduction histidine kinase5e-2099
NC_019940:1727384:1727384172738417329335550Thioflavicoccus mobilis 8321 chromosome, complete genomePAS domain-containing protein8e-2098.6
NC_011894:6516856:6541953654195365438601908Methylobacterium nodulans ORS 2060, complete genomesignal transduction histidine kinase4e-1995.9
NC_011894:6793497:6807127680712768082901164Methylobacterium nodulans ORS 2060, complete genomesignal transduction histidine kinase2e-1894
NC_007498:357484:3768073768073805263720Pelobacter carbinolicus DSM 2380, complete genometwo component sensor histidine kinase1e-1790.9
NC_015676:1417456:1432257143225714352683012Methanosalsum zhilinae DSM 4017 chromosome, complete genomesignal transduction histidine kinase4e-1789.4
NC_015216:405657:4241564241564258591704Methanobacterium sp. AL-21 chromosome, complete genomesignal transduction histidine kinase6e-1789
NC_014408:1193239:1194297119429711956791383Methanothermobacter marburgensis str. Marburg chromosome, completesensory transduction histidine kinase8e-1788.6
NC_015676:1663700:1665586166558616672441659Methanosalsum zhilinae DSM 4017 chromosome, complete genomesignal transduction histidine kinase1e-1687.8
NC_015676:109743:1466261466261492982673Methanosalsum zhilinae DSM 4017 chromosome, complete genomesignal transduction histidine kinase2e-1687.4
NC_015177:2795487:2821576282157628235251950Pedobacter saltans DSM 12145 chromosome, complete genomesignal transduction histidine kinase2e-1687.4
NC_014408:1340016:1362183136218313641711989Methanothermobacter marburgensis str. Marburg chromosome, completesensory transduction histidine kinase3e-1686.3
NC_020389:1083517:1097343109734310983621020Methanosarcina mazei Tuc01, complete genomeSensory transduction histidine kinase2e-1584
NC_015216:1941000:1943517194351719451271611Methanobacterium sp. AL-21 chromosome, complete genomesignal transduction histidine kinase2e-1583.6
NC_015574:1676798:1695092169509216971102019Methanobacterium sp. SWAN-1 chromosome, complete genomesignal transduction histidine kinase5e-1582.4
NC_007355:970670:9875989875989903542757Methanosarcina barkeri str. fusaro chromosome 1, complete sequencehypothetical protein6e-1582
NC_009464:931647:9355969355969374461851Uncultured methanogenic archaeon RC-I, complete genomeputative signal transduction histidine kinase8e-1581.6
NC_011894:6731115:6742313674231367445322220Methylobacterium nodulans ORS 2060, complete genomesignal transduction histidine kinase8e-1581.6
NC_014253:933261:9412849412849429961713Methanohalobium evestigatum Z-7303 chromosome, complete genomesignal transduction histidine kinase9e-1581.6
NC_014408:1193239:1193239119323911942971059Methanothermobacter marburgensis str. Marburg chromosome, completesensory transduction histidine kinase1e-1481.3
NC_003901:1268995:1285023128502312875182496Methanosarcina mazei Go1, complete genomesensory transduction histidine kinase2e-1480.9
NC_014253:431942:4453354453354474642130Methanohalobium evestigatum Z-7303 chromosome, complete genomesignal transduction histidine kinase2e-1480.5
NC_015321:4287945:4287945428794542889701026Fluviicola taffensis DSM 16823 chromosome, complete genomesignal transduction histidine kinase2e-1480.5
NC_007355:2426000:2426018242601824297643747Methanosarcina barkeri str. fusaro chromosome 1, complete sequencesignal-transducing histidine kinase2e-1480.1
NC_007355:2039435:2054203205420320570402838Methanosarcina barkeri str. fusaro chromosome 1, complete sequencesensory transduction histidine kinase3e-1479.7
NC_015574:1474967:1492207149220714946212415Methanobacterium sp. SWAN-1 chromosome, complete genomesignal transduction histidine kinase5e-1479.3
NC_004557:2289135:2304838230483823062861449Clostridium tetani E88, complete genomeethanolamine utilization sensory transduction histidine kinase9e-1478.2
NC_013859:61586:8057180571817881218Azospirillum sp. B510 plasmid pAB510e, complete sequencetwo-component sensor histidine kinase1e-1377.8
NC_014166:2055984:2073276207327620747121437Arcobacter nitrofigilis DSM 7299 chromosome, complete genomesignal transduction histidine kinase1e-1377.8
NC_017192:714346:7163637163637182341872Arcobacter sp. L, complete genometwo-component sensor kinase2e-1377.4
NC_014166:1478469:1512972151297215147591788Arcobacter nitrofigilis DSM 7299 chromosome, complete genomesignal transduction histidine kinase3e-1376.6
NC_015574:1970967:1987565198756519892231659Methanobacterium sp. SWAN-1 chromosome, complete genomesignal transduction histidine kinase4e-1376.3
NC_015216:1941000:1945174194517419466731500Methanobacterium sp. AL-21 chromosome, complete genomesignal transduction histidine kinase5e-1375.9
NC_011884:2051723:2051723205172320545602838Cyanothece sp. PCC 7425, complete genomesignal transduction histidine kinase6e-1375.5
NC_013517:1055854:1131726113172611331231398Sebaldella termitidis ATCC 33386, complete genomesignal transduction histidine kinase2e-1274.3
NC_017249:3229500:323225332322533233203951Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein3e-1273.2
NC_015145:2693749:2730271273027127317371467Arthrobacter phenanthrenivorans Sphe3 chromosome, complete genomesignal transduction histidine kinase4e-1272.8
NC_003901:2685716:2703485270348527070003516Methanosarcina mazei Go1, complete genomesensory transduction histidine kinase7e-1272
NC_020389:1730376:1730376173037617326882313Methanosarcina mazei Tuc01, complete genomesensory transduction histidine kinase1e-1171.6
NC_002678:4618555:4620483462048346215141032Mesorhizobium loti MAFF303099, complete genometwo-component sensor protein2e-1170.1
NC_020389:2288541:2311522231152223148033282Methanosarcina mazei Tuc01, complete genomesensory transduction histidine kinase3e-1169.7
NC_012491:5914500:5934092593409259355521461Brevibacillus brevis NBRC 100599, complete genometwo-component sensor histidine kinase3e-1169.7
NC_016109:5455060:5467591546759154691441554Kitasatospora setae KM-6054, complete genomeputative two-component system sensor kinase7e-1168.6
NC_011757:5742290:5744893574489357459391047Methylobacterium chloromethanicum CM4, complete genomesignal transduction histidine kinase9e-1168.6
NC_013192:63111:7418174181755841404Leptotrichia buccalis DSM 1135, complete genomesignal transduction histidine kinase1e-1068.2
NC_020389:2996978:3012499301249930151742676Methanosarcina mazei Tuc01, complete genomehypothetical protein9e-1168.2
NC_003901:3544712:3563665356366535662952631Methanosarcina mazei Go1, complete genomesensory transduction histidine kinase9e-1168.2
NC_003552:1492500:1510392151039215122421851Methanosarcina acetivorans C2A, complete genomesensory transduction histidine kinase1e-1067.8
NC_014364:2751662:276498727649872765835849Spirochaeta smaragdinae DSM 11293 chromosome, complete genomesignal transduction histidine kinase6e-1065.5
NC_013521:940495:9578009578009592781479Sanguibacter keddieii DSM 10542, complete genomesignal transduction histidine kinase1e-0964.7
NC_003901:2685716:2707585270758527109083324Methanosarcina mazei Go1, complete genomesensory transduction histidine kinase1e-0964.7
NC_015703:3746057:3759132375913237608591728Runella slithyformis DSM 19594 chromosome, complete genomesignal transduction histidine kinase2e-0963.9
NC_014019:3543389:3561801356180135632341434Bacillus megaterium QM B1551 chromosome, complete genomeethanolamine two-component sensor histidine kinase4e-0963.2
NC_014217:800406:8151018151018161531053Starkeya novella DSM 506 chromosome, complete genomesignal transduction histidine kinase4e-0962.8
NC_009253:1381401:1383081138308113845591479Desulfotomaculum reducens MI-1 chromosome, complete genomesignal transduction histidine kinase5e-0962.8
NC_003552:1157294:1157294115729411597862493Methanosarcina acetivorans C2A, complete genomesensory transduction histidine kinase5e-0962.4
NC_017187:691769:6945016945016963541854Arcobacter butzleri ED-1, complete genometwo-component sensor kinase5e-0962.4
NC_014643:54500:6046160461620261566Rothia dentocariosa ATCC 17931 chromosome, complete genomesensor histidine kinase7e-0962
NC_013595:9149273:9168119916811991696121494Streptosporangium roseum DSM 43021, complete genomeputative signal transduction histidine kinase8e-0962
NC_010168:1373337:1391491139149113929541464Renibacterium salmoninarum ATCC 33209 chromosome, complete genomesensory transduction protein kinase9e-0961.6
NC_009633:286677:2918822918822932911410Alkaliphilus metalliredigens QYMF chromosome, complete genomesignal transduction histidine kinase9e-0961.6
NC_020389:2288541:2315191231519123189703780Methanosarcina mazei Tuc01, complete genomehypothetical protein2e-0860.8
NC_014364:2246524:2277833227783322795421710Spirochaeta smaragdinae DSM 11293 chromosome, complete genomesignal transduction histidine kinase2e-0860.5
NC_003366:1091766:1097054109705410984811428Clostridium perfringens str. 13, complete genometwo-component sensor histidine kinase3e-0860.1
NC_017187:500638:5186495186495204451797Arcobacter butzleri ED-1, complete genometwo-component sensor kinase3e-0860.1
NC_003901:2906493:2906493290649329091502658Methanosarcina mazei Go1, complete genomesensory transduction histidine kinase3e-0860.1
NC_014550:2355500:2369888236988823713751488Arthrobacter arilaitensis Re117, complete genomeputative signal transduction histidine kinase3e-0860.1
NC_003901:2685716:2711444271144427152233780Methanosarcina mazei Go1, complete genomesensory transduction histidine kinase2e-0860.1
NC_008261:1048515:1053806105380610552331428Clostridium perfringens ATCC 13124, complete genomesensor histidine kinase3e-0859.7
NC_018000:2054098:206846520684652069211747Sinorhizobium fredii USDA 257 chromosome, complete genomesignal transduction histidine kinase9e-0858.5
NC_016584:1998000:2018766201876620201871422Desulfosporosinus orientis DSM 765 chromosome, complete genomesignal transduction histidine kinase1e-0758.2
NC_010338:1216385:123715012371501237872723Caulobacter sp. K31, complete genomesignal transduction histidine kinase2e-0757.4
NC_015675:4565500:456654245665424567168627Mesorhizobium opportunistum WSM2075 chromosome, complete genomeputative signal transduction histidine kinase3e-0756.6
NC_014364:3238374:3239623323962332411881566Spirochaeta smaragdinae DSM 11293 chromosome, complete genomesignal transduction histidine kinase3e-0756.6
NC_005955:1284500:1301114130111413025711458Bartonella quintana str. Toulouse, complete genomehypothetical protein5e-0755.8
NC_008578:591357:5913575913575928291473Acidothermus cellulolyticus 11B, complete genomesignal transduction histidine kinase6e-0755.8
NC_017179:2067015:2072139207213920735481410Clostridium difficile BI1, complete genometwo-component sensor histidine kinase1e-0655.1
NC_013315:2059007:2064131206413120655401410Clostridium difficile CD196 chromosome, complete genometwo-component sensor histidine kinase1e-0655.1
NC_020300:1344453:1359142135914213605721431Bartonella australis Aust/NH1, complete genomesensor histidine kinase3e-0653.5
NC_014614:284005:2908202908202922381419Clostridium sticklandii, complete genomeSignal transduction histidine kinase3e-0653.1
NC_005956:1572500:1588481158848115899381458Bartonella henselae str. Houston-1, complete genomehypothetical protein5e-0652.8
NC_011884:4366831:4366831436683143678621032Cyanothece sp. PCC 7425, complete genomesignal transduction histidine kinase5e-0652.4
NC_010161:2050816:2068528206852820699851458Bartonella tribocorum CIP 105476, complete genomehypothetical protein6e-0652.4
NC_003902:3514000:3520554352055435215641011Xanthomonas campestris pv. campestris str. ATCC 33913, completetwo-component system sensor protein6e-0652.4