Pre_GI: BLASTP Hits

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Query: NC_017249:4365935:4371805 Bradyrhizobium japonicum USDA 6, complete genome

Start: 4371805, End: 4373079, Length: 1275

Host Lineage: Bradyrhizobium japonicum; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This nitrogen-fixing bacterium develops a symbiotic relationship with the soybean plant Glycine max and is related to other N2-fixing Rhizobia which are symbiotic with legumes. The bacterium establishes itself in a root nodule which provides a protective environment for the organism to live while the bacterium provides the plant cell with nitrogen. This is an agriculturally important symbiotic relationship as it obviates the need for expensive and environmentally damaging fertilizer.Genes that code for proteins involved in root nodulation are carried on the chromosome. The production of the nodulation signal, lipochitin, is directed by genes which are turned on in the presence of plant flavonoid compounds. The bacteria are endocytosed into a cortical cell, and are enclosed within a membrane bound organelle termed the symbiosome.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011985:1831961:1844038184403818453331296Agrobacterium radiobacter K84 chromosome 1, complete genometyrosine site-specific integrase/recombinase protein3e-92338
NC_008687:302450:3053223053223065031182Paracoccus denitrificans PD1222 chromosome 2, complete sequencephage integrase family protein2e-64246
NC_008687:256692:2735792735792747331155Paracoccus denitrificans PD1222 chromosome 2, complete sequencephage integrase family protein1e-63244
NC_009429:622359:6440406440406451941155Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA01, completehypothetical protein4e-63242
NC_009952:366959:3847653847653859581194Dinoroseobacter shibae DFL 12, complete genomephage integrase family protein1e-61237
NC_008043:615049:6341046341046353391236Silicibacter sp. TM1040 mega plasmid, complete sequencephage integrase4e-58225
NC_014010:1020488:1055855105585510572671413Candidatus Puniceispirillum marinum IMCC1322 chromosome, completehypothetical protein5e-54212
NC_013943:2705983:2705983270598327071761194Denitrovibrio acetiphilus DSM 12809 chromosome, complete genomeintegrase family protein4e-45182
NC_016587:523215:5480775480775494561380Azospirillum lipoferum 4B plasmid AZO_p4, complete sequenceputative phage integrase3e-43176
NC_014910:242845:2786792786792800431365Alicycliphilus denitrificans BC chromosome, complete genomeintegrase family protein7e-36151
NC_008782:3110744:3127686312768631290201335Acidovorax sp. JS42, complete genomephage integrase family protein2e-34146
NC_015422:1694363:1708133170813317093351203Alicycliphilus denitrificans K601 chromosome, complete genomeintegrase family protein7e-34145
NC_008782:2781229:2797589279758927987911203Acidovorax sp. JS42, complete genomephage integrase family protein7e-34145
NC_014414:1104386:1104386110438611056511266Parvularcula bermudensis HTCC2503 chromosome, complete genomePhage integrase1e-33144
NC_007722:168937:175211175211176203993Erythrobacter litoralis HTCC2594, complete genomesite-specific recombinase, phage integrase family protein4e-33142
NC_014972:1126426:1145414114541411465951182Desulfobulbus propionicus DSM 2032 chromosome, complete genomeintegrase family protein2e-31136
NC_009052:4335754:4352962435296243540921131Shewanella baltica OS155, complete genomephage integrase family protein1e-30134
NC_007722:168937:1762001762001773691170Erythrobacter litoralis HTCC2594, complete genomesite-specific recombinase, phage integrase family protein3e-29129
NC_020911:4465500:4465774446577444670331260Octadecabacter antarcticus 307, complete genomeDNA integration/recombination/inversion protein3e-29129
NC_014034:1036652:1041679104167910429081230Rhodobacter capsulatus SB1003 chromosome, complete genomephage integrase4e-28125
NC_008752:725189:7308507308507320551206Acidovorax avenae subsp. citrulli AAC00-1, complete genomephage integrase family protein1e-27124
NC_012560:3667177:3679716367971636809181203Azotobacter vinelandii DJ, complete genomePhage integrase3e-27123
NC_021150:3667176:3679715367971536809171203Azotobacter vinelandii CA6, complete genomePhage integrase3e-27123
NC_011958:976500:9867399867399880431305Rhodobacter sphaeroides KD131 chromosome 2, complete genomePhage integrase7e-27121
NC_009485:8187321:8201729820172982030841356Bradyrhizobium sp. BTAi1 chromosome, complete genomephage integrase1e-26121
NC_009656:3869281:3883476388347638846751200Pseudomonas aeruginosa PA7 chromosome, complete genomeintegrase2e-26120
NC_006526:1976779:1984282198428219854811200Zymomonas mobilis subsp. mobilis ZM4, complete genomeintegrase2e-26120
NC_010943:1332243:1366343136634313675841242Stenotrophomonas maltophilia K279a, complete genomeputative prophage integrase3e-25116
NC_007794:262402:2683062683062695981293Novosphingobium aromaticivorans DSM 12444, complete genomephage integrase4e-25116
NC_003295:2787371:2824600282460028258021203Ralstonia solanacearum GMI1000, complete genomePROBABLE INTEGRASE PROTEIN5e-25115
NC_015580:141379:1621711621711633671197Novosphingobium sp. PP1Y, complete genomephage integrase1e-24114
NC_008577:1455000:1458630145863014598291200Shewanella sp. ANA-3 chromosome 1, complete sequencephage integrase family protein1e-24114
NC_010172:2082000:2085744208574420870331290Methylobacterium extorquens PA1, complete genomeintegrase family protein2e-24114
NC_010170:2246993:2250722225072222519301209Bordetella petrii, complete genomeint22e-24114
NC_018691:3041851:3048054304805430492561203Alcanivorax dieselolei B5 chromosome, complete genomeIntegrase-tyrosine recombinase protein2e-24113
NC_010002:3002354:3015297301529730165441248Delftia acidovorans SPH-1, complete genomeintegrase family protein1e-23111
NC_008789:350650:3635873635873647261140Halorhodospira halophila SL1, complete genomephage integrase family protein1e-23111
NC_014972:480355:4934964934964946591164Desulfobulbus propionicus DSM 2032 chromosome, complete genomeintegrase family protein2e-22107
NC_020829:2152000:2164141216414121653401200Pseudomonas denitrificans ATCC 13867, complete genometyrosine-based site-specific recombinase CMGI-21e-22107
NC_008609:3921113:3938275393827539394831209Pelobacter propionicus DSM 2379, complete genomephage integrase family protein3e-22106
NC_014414:1140357:1144723114472311460451323Parvularcula bermudensis HTCC2503 chromosome, complete genomePhage integrase1e-21104
NC_009445:467682:4716384716384729271290Bradyrhizobium sp. ORS 278 chromosome, complete genomephage related integrase3e-21103
NC_014217:800406:808989808989809348360Starkeya novella DSM 506 chromosome, complete genomehypothetical protein7e-21102
NC_015186:491930:5133815133815146521272Acidiphilium multivorum AIU301, complete genomephage integrase family protein6e-1892.4
NC_009052:4335754:4351610435161043529651356Shewanella baltica OS155, complete genomephage integrase family protein1e-1791.7
NC_017249:908500:9120779120779133451269Bradyrhizobium japonicum USDA 6, complete genomehypothetical protein1e-1791.3
NC_016602:3122700:3133060313306031342471188Vibrio furnissii NCTC 11218 chromosome 1, complete sequencephage integrase family protein2e-1687
NC_015633:2801321:2823882282388228250841203Vibrio anguillarum 775 chromosome chromosome I, complete sequenceDNA integration/recombination/inversion protein7e-1685.5
NC_010793:1922000:1940379194037919415181140Orientia tsutsugamushi str. Ikeda, complete genomeputative integrase2e-1584.3
NC_014121:398012:4134664134664146621197Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeputative integrase5e-1582.8
NC_009943:748788:7553137553137565061194Candidatus Desulfococcus oleovorans Hxd3, complete genomeintegrase family protein5e-1582.4
NC_012108:1973861:1990732199073219918861155Desulfobacterium autotrophicum HRM2, complete genometyrosine recombinase XerD1e-1481.3
NC_015422:3581848:3595358359535835966021245Alicycliphilus denitrificans K601 chromosome, complete genomeintegrase family protein1e-1481.3
NC_009434:1580205:1597972159797215993751404Pseudomonas stutzeri A1501, complete genomeintegrase1e-1378.2
NC_010814:1441327:1473385147338514746501266Geobacter lovleyi SZ, complete genomeintegrase family protein5e-1375.9
NC_010793:1723365:1726048172604817272471200Orientia tsutsugamushi str. Ikeda, complete genomeputative integrase5e-1375.9
NC_010793:1695716:1709642170964217108411200Orientia tsutsugamushi str. Ikeda, complete genomeputative integrase6e-1375.5
NC_010793:1628500:1631109163110916323081200Orientia tsutsugamushi str. Ikeda, complete genomeputative integrase6e-1375.5
NC_008011:213386:2187032187032198691167Lawsonia intracellularis PHE/MN1-00, complete genomeprophage DLP12 integrase1e-1274.7
NC_020911:3046916:3057856305785630589891134Octadecabacter antarcticus 307, complete genomeDNA integration/recombination/inversion protein1e-1274.3
NC_010725:4035397:4098810409881041003121503Methylobacterium populi BJ001, complete genomeintegrase family protein5e-1272.8
NC_010793:30488:468754687547690816Orientia tsutsugamushi str. Ikeda, complete genomeputative integrase5e-1272.4
NC_010793:1811401:1846220184622018473381119Orientia tsutsugamushi str. Ikeda, complete genomeputative integrase8e-1272
NC_011768:5900500:5905877590587759071061230Desulfatibacillum alkenivorans AK-01, complete genomeintegrase family protein1e-1171.2
NC_012912:1053618:1066900106690010682461347Dickeya zeae Ech1591, complete genomeintegrase family protein2e-1170.5
NC_020911:2921925:2929766292976629308961131Octadecabacter antarcticus 307, complete genomeputative phage integrase5e-1169.3
NC_008751:2988235:2994488299448829957411254Desulfovibrio vulgaris subsp. vulgaris DP4, complete genomephage integrase family protein9e-1168.6
NC_005139:1784000:1822239182223918234471209Vibrio vulnificus YJ016 chromosome I, complete sequenceintegrase2e-1067.4
NC_004459:2443000:2501649250164925028571209Vibrio vulnificus CMCP6 chromosome I, complete sequenceIntegrase3e-1067
NC_008554:4839116:4849957484995748512041248Syntrophobacter fumaroxidans MPOB, complete genomephage integrase family protein3e-1066.6
NC_020418:3133831:3146831314683131479941164Morganella morganii subsp. morganii KT, complete genomeintegrase5e-1065.9
NC_008702:2039462:2046178204617820472541077Azoarcus sp. BH72, complete genomesite-specific recombinase, phage integrase family5e-1065.9
NC_009484:1299500:1304664130466413059021239Acidiphilium cryptum JF-5 chromosome, complete genomephage integrase family protein6e-1065.5
NC_015424:3520783:3558597355859735599311335Aeromonas veronii B565 chromosome, complete genomephage integrase family protein1e-0964.7
NC_015388:1020747:102930310293031030148846Desulfobacca acetoxidans DSM 11109 chromosome, complete genomeintegrase family protein2e-0963.9
NC_013854:2148215:215822121582212159126906Azospirillum sp. B510, complete genomeintegrase2e-0963.9
NC_013282:1200993:1204148120414812053111164Cronobacter turicensis, complete genomeProphage DLP12 integrase2e-0963.9
NC_011094:593100:6007016007016018641164Salmonella enterica subsp. enterica serovar Schwarzengrund strprophage DLP12 integrase3e-0963.2
NC_012108:2037429:2046862204686220479591098Desulfobacterium autotrophicum HRM2, complete genomehypothetical protein4e-0963.2
NC_011205:609464:6170646170646182271164Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853prophage DLP12 integrase4e-0963.2
NC_012587:1203103:1216780121678012180691290Rhizobium sp. NGR234, complete genomeDNA integration/recombination/invertion protein4e-0962.8
NC_020908:2571943:2584876258487625860331158Octadecabacter arcticus 238, complete genomeputative phage integrase7e-0962.4
NC_011883:2826000:2839403283940328405991197Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,integrase family protein6e-0962.4
NC_004741:310382:3260603260603272231164Shigella flexneri 2a str. 2457T, complete genomeputative phage integrase2e-0860.8
NC_004337:309833:3269163269163280791164Shigella flexneri 2a str. 301, complete genomeputative phage integrase2e-0860.8
NC_009667:1934818:1940218194021819414981281Ochrobactrum anthropi ATCC 49188 chromosome 1, complete sequencephage integrase family protein2e-0860.8
NC_016845:1285435:1288374128837412895371164Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,site-specific recombinase, phage integrase family2e-0860.8
NC_000913:558920:5640385640385652011164Escherichia coli K12, complete genomeDLP12 prophage; predicted integrase2e-0860.8
NC_010473:498252:5033705033705045331164Escherichia coli str. K-12 substr. DH10B, complete genomeDLP12 prophage; predicted integrase2e-0860.8
AC_000091:558920:5640385640385652011164Escherichia coli W3110 DNA, complete genomepredicted integrase2e-0860.8
NC_012759:461680:4667984667984679611164Escherichia coli BW2952 chromosome, complete genomeDLP12 prophage; putative integrase2e-0860.8
NC_011751:643976:6449436449436461061164Escherichia coli UMN026 chromosome, complete genomeputative integrase; DLP12 prophage2e-0860.8
NC_011415:600375:6083326083326094951164Escherichia coli SE11 chromosome, complete genomephage integrase2e-0860.8
NC_012947:3231893:3247313324731332484761164Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeintegrase2e-0860.8
NC_012967:531000:5369295369295380921164Escherichia coli B str. REL606 chromosome, complete genomeputative integrase2e-0860.8
NC_011283:4212000:4229167422916742303301164Klebsiella pneumoniae 342 chromosome, complete genomephage integrase family site-specific recombinase2e-0860.8
NC_013456:1843000:1843625184362518448301206Vibrio sp. Ex25 chromosome 1, complete genomeintegrase2e-0860.5
NC_012751:1538500:1538746153874615398911146Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum), completeAPSE-2 prophage; integrase2e-0860.5
NC_004741:310382:3138433138433150061164Shigella flexneri 2a str. 2457T, complete genomeputative phage integrase2e-0860.5
NC_015554:1215401:1224805122480512260791275Alteromonas sp. SN2 chromosome, complete genomeintegrase family protein3e-0860.1
NC_012214:2805297:282140528214052822034630Erwinia pyrifoliae Ep1/96, complete genomephage integrase family, fragment4e-0859.7
NC_006905:368942:3728473728473740101164Salmonella enterica subsp. enterica serovar Choleraesuis strInt4e-0859.7
NC_011083:374000:3768503768503780131164Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,site-specific recombinase, phage integrase family5e-0859.3
NC_018678:87064:9596595965970681104Alteromonas macleodii str. 'English Channel 673' chromosome,integrase6e-0858.9
NC_007759:2179000:2183062218306221841561095Syntrophus aciditrophicus SB, complete genomephage integrase family protein9e-0858.5
NC_009076:3876733:388817438881743888692519Burkholderia pseudomallei 1106a chromosome I, complete sequencesite-specific recombinase, phage integrase family2e-0757.4
NC_014355:288000:2962442962442972841041Candidatus Nitrospira defluvii, complete genomeputative phage integrase2e-0757.4
NC_006350:3957454:396679739667973967651855Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative bacteriophage integrase2e-0757.4
NC_016860:364981:3688873688873700501164Salmonella enterica subsp. enterica serovar Typhimurium strintegrase2e-0757.4
NC_007651:3719191:373247537324753732954480Burkholderia thailandensis E264 chromosome I, complete sequencesite-specific recombinase, phage integrase family3e-0757
NC_007511:1147696:1155585115558511568591275Burkholderia sp. 383 chromosome 2, complete sequencePhage integrase4e-0756.2
NC_015976:1893076:1926152192615219274351284Sphingobium sp. SYK-6, complete genomehypothetical protein1e-0654.7
NC_008260:2340824:2352446235244623535491104Alcanivorax borkumensis SK2, complete genomeshufflon-specific DNA recombinase2e-0653.9
NC_015731:3274739:3293661329366132946981038Nitrosomonas sp. Is79A3 chromosome, complete genomeintegrase family protein2e-0653.9
NC_020418:2084937:2084937208493720860881152Morganella morganii subsp. morganii KT, complete genomePhage integrase3e-0653.5
NC_011989:594353:6107606107606117911032Agrobacterium vitis S4 chromosome 1, complete sequenceIntegrase7e-0652
NC_017328:303987:3104213104213115811161Shigella flexneri 2002017 chromosome, complete genomephage integrase family site-specific recombinase9e-0652
NC_008258:269806:2774612774612786211161Shigella flexneri 5 str. 8401, complete genomeputative integrase9e-0652