Pre_GI: BLASTP Hits

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Query: NC_017249:3119000:3120081 Bradyrhizobium japonicum USDA 6, complete genome

Start: 3120081, End: 3120593, Length: 513

Host Lineage: Bradyrhizobium japonicum; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This nitrogen-fixing bacterium develops a symbiotic relationship with the soybean plant Glycine max and is related to other N2-fixing Rhizobia which are symbiotic with legumes. The bacterium establishes itself in a root nodule which provides a protective environment for the organism to live while the bacterium provides the plant cell with nitrogen. This is an agriculturally important symbiotic relationship as it obviates the need for expensive and environmentally damaging fertilizer.Genes that code for proteins involved in root nodulation are carried on the chromosome. The production of the nodulation signal, lipochitin, is directed by genes which are turned on in the presence of plant flavonoid compounds. The bacteria are endocytosed into a cortical cell, and are enclosed within a membrane bound organelle termed the symbiosome.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017249:18493:428124281243357546Bradyrhizobium japonicum USDA 6, complete genomeconjugal transfer protein precursor3e-42170
NC_004463:18497:428204282043365546Bradyrhizobium japonicum USDA 110, complete genomeconjugal transfer protein precursor3e-42170
NC_008686:1472899:147606614760661476608543Paracoccus denitrificans PD1222 chromosome 1, complete sequenceconjugal transfer protein precursor4e-42170
NC_009668:445134:513800513800514345546Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequenceconjugal transfer protein precursor2e-40165
NC_007925:3933765:395422639542263954771546Rhodopseudomonas palustris BisB18, complete genomeconjugal transfer protein precursor8e-40162
NC_014834:872924:894178894178894723546Rhodopseudomonas palustris DX-1 chromosome, complete genomeconjugative transfer signal peptidase TraF4e-39160
NC_011365:1135750:116187311618731162415543Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeputative conjugal transfer protein TraF3e-38157
NC_009720:622262:655257655257655802546Xanthobacter autotrophicus Py2, complete genomeconjugal transfer protein precursor4e-38157
NC_009720:4406991:444132044413204441865546Xanthobacter autotrophicus Py2, complete genomepeptidase S26C conjugative transfer signal peptidase TraF2e-37154
NC_016027:2512297:251408825140882514717630Gluconacetobacter xylinus NBRC 3288, complete genomeconjugal transfer protein precursor1e-34145
NC_010125:381711:398827398827399456630Gluconacetobacter diazotrophicus PAl 5, complete genomeputative conjugal transfer protein TraF6e-34143
NC_015186:2908387:291388729138872914426540Acidiphilium multivorum AIU301, complete genomeputative conjugal transfer protein TraF7e-25113
NC_015556:2265940:228680622868062287333528Pseudomonas fulva 12-X chromosome, complete genomePeptidase S26, conserved region1e-22105
NC_014910:242845:262595262595263194600Alicycliphilus denitrificans BC chromosome, complete genomepeptidase s26, conserved region protein8e-22102
NC_010943:1332243:134805613480561348631576Stenotrophomonas maltophilia K279a, complete genomeputative transmembrane anchor conjugal transfer protein4e-21100
NC_015381:2859000:289326828932682893870603Burkholderia gladioli BSR3 chromosome 1, complete sequencehypothetical protein5e-21100
NC_016147:1961000:199013719901371990736600Pseudoxanthomonas spadix BD-a59 chromosome, complete genometype IV secretion system protein1e-2099
NC_010338:2443765:244452124445212445039519Caulobacter sp. K31, complete genomeType IV secretory pathway protease TraF-like protein3e-2097.8
NC_014100:2782000:279994627999462800458513Caulobacter segnis ATCC 21756 chromosome, complete genomepeptidase S26, conserved region4e-2097.4
NC_014414:2540189:254347825434782544173696Parvularcula bermudensis HTCC2503 chromosome, complete genomeconjugal transfer protein4e-1994
NC_008577:1455000:148007914800791480666588Shewanella sp. ANA-3 chromosome 1, complete sequenceputative conjugal transfer TRAF transmembrane protein2e-1892
NC_008752:725189:749121749121749732612Acidovorax avenae subsp. citrulli AAC00-1, complete genomeputative conjugal transfer TRAF transmembrane protein5e-1890.5
NC_003295:2787371:280686628068662807465600Ralstonia solanacearum GMI1000, complete genomePROBABLE CONJUGAL TRANSFER TRAF TRANSMEMBRANE PROTEIN1e-1789
NC_009719:1972545:197197919719791972557579Parvibaculum lavamentivorans DS-1 chromosome, complete genomeplasmid transfer protein TraF2e-1788.6
NC_014500:842493:867251867251867796546Dickeya dadantii 3937 chromosome, complete genometype IV secretory pathway, protease TraF5e-1787
NC_010170:4800000:482394348239434824533591Bordetella petrii, complete genomeconjugal transfer protein TraF2e-1685.1
NC_012982:711122:728334728334728825492Hirschia baltica ATCC 49814, complete genomeplasmid transfer protein TraF1e-1272.8
NC_006526:1976779:199656919965691997324756Zymomonas mobilis subsp. mobilis ZM4, complete genomeconjugal transfer protein7e-0960.1
NC_019757:1309766:131088013108801311452573Cylindrospermum stagnale PCC 7417, complete genomesignal peptidase I5e-0753.5
NC_006371:1743982:176795617679561768483528Photobacterium profundum SS9 chromosome 2, complete sequencehypothetical conjugal transfer protein TraF6e-0753.5
NC_011059:670345:670345670345671007663Prosthecochloris aestuarii DSM 271, complete genomeputative conjugal transfer protein TraF9e-0752.8
NC_011991:65368:694356943569968534Agrobacterium vitis S4 plasmid pAtS4b, complete sequenceconjugative transfer signal peptidase TraF3e-0651.2
NC_015221:12389:337623376234301540Nitrosomonas sp. AL212 plasmid pNAL21202, complete sequenceconjugative transfer signal peptidase TraF4e-0650.8