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Query: NC_017249:18493:29787 Bradyrhizobium japonicum USDA 6, complete genome

Start: 29787, End: 31367, Length: 1581

Host Lineage: Bradyrhizobium japonicum; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This nitrogen-fixing bacterium develops a symbiotic relationship with the soybean plant Glycine max and is related to other N2-fixing Rhizobia which are symbiotic with legumes. The bacterium establishes itself in a root nodule which provides a protective environment for the organism to live while the bacterium provides the plant cell with nitrogen. This is an agriculturally important symbiotic relationship as it obviates the need for expensive and environmentally damaging fertilizer.Genes that code for proteins involved in root nodulation are carried on the chromosome. The production of the nodulation signal, lipochitin, is directed by genes which are turned on in the presence of plant flavonoid compounds. The bacteria are endocytosed into a cortical cell, and are enclosed within a membrane bound organelle termed the symbiosome.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004463:18497:2979229792313721581Bradyrhizobium japonicum USDA 110, complete genomerecombinase01055
NC_007651:72952:8089780897824621566Burkholderia thailandensis E264 chromosome I, complete sequencerecombinase7e-97354
NC_010725:3315007:3340397334039733418901494Methylobacterium populi BJ001, complete genomeRecombinase1e-96353
NC_015675:3046852:3047676304767630492381563Mesorhizobium opportunistum WSM2075 chromosome, complete genomeRecombinase2e-96353
NC_011992:3375929:3389131338913133906961566Acidovorax ebreus TPSY, complete genomeRecombinase4e-96352
NC_007794:561623:5686745686745702481575Novosphingobium aromaticivorans DSM 12444, complete genomeRecombinase2e-95350
NC_003064:22535:4258542585441411557Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencehypothetical protein3e-95349
NC_003306:22228:4227842278437951518Agrobacterium tumefaciens str. C58 plasmid AT, complete sequencerecombinase5e-95348
NC_012660:5793200:5821828582182858233931566Pseudomonas fluorescens SBW25 chromosome, complete genomeputative recombinase1e-94347
NC_004578:20738:4275442754443101557Pseudomonas syringae pv. tomato str. DC3000, complete genomerecombinase, putative3e-94346
NC_004578:212468:2158072158072173631557Pseudomonas syringae pv. tomato str. DC3000, complete genomerecombinase, putative3e-94346
NC_005773:106000:1111381111381127091572Pseudomonas syringae pv. phaseolicola 1448A, complete genomerecombinase5e-94345
NC_008826:170609:1715051715051730701566Methylibium petroleiphilum PM1 plasmid RPME01, complete sequenceputative recombinase5e-93342
NC_008825:1258500:1289040128904012906051566Methylibium petroleiphilum PM1, complete genomeputative recombinase5e-93342
NC_008358:2638245:2673229267322926748061578Hyphomonas neptunium ATCC 15444, complete genomesite-specific recombinase, resolvase family4e-93342
NC_019973:6102442:6116952611695261185261575Mesorhizobium australicum WSM2073, complete genomesite-specific recombinase, DNA invertase Pin1e-92340
NC_009050:567209:5855105855105870811572Rhodobacter sphaeroides ATCC 17029 chromosome 2, complete sequenceRecombinase3e-92339
NC_020453:1072979:1080316108031610819381623Agromonas oligotrophica S58 DNA, complete genomerecombinase4e-91335
NC_007494:1:97379737113081572Rhodobacter sphaeroides 2.4.1 chromosome 2, complete sequencerecombinase5e-91335
NC_008825:3161146:3169372316937231709371566Methylibium petroleiphilum PM1, complete genomeputative recombinase1e-90334
NC_004463:925140:9483239483239498911569Bradyrhizobium japonicum USDA 110, complete genomerecombinase9e-90331
NC_009445:467682:4925524925524941831632Bradyrhizobium sp. ORS 278 chromosome, complete genomerecombinase1e-89330
NC_015381:1:7939793995101572Burkholderia gladioli BSR3 chromosome 1, complete sequencerecombinase1e-88327
NC_007651:3064530:3156665315666531582511587Burkholderia thailandensis E264 chromosome I, complete sequencerecombinase2e-87323
NC_009708:915814:9260369260369275951560Yersinia pseudotuberculosis IP 31758 chromosome, complete genomeresolvase family site-specific recombinase4e-82306
NC_020209:4768500:4797153479715347985741422Pseudomonas poae RE*1-1-14, complete genomerecombinase3e-81302
NC_011283:4438500:4472973447297344745081536Klebsiella pneumoniae 342 chromosome, complete genomesite-specific recombinase, resolvase family3e-75283
NC_016514:3573400:3582095358209535836721578Enterobacter cloacae EcWSU1 chromosome, complete genomeresolvase family site-specific recombinase1e-72274
NC_012947:1106000:1114312111431211158681557Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completeRecombinase2e-70267
NC_012967:2669182:2678929267892926804851557Escherichia coli B str. REL606 chromosome, complete genomeRecombinase2e-70267
NC_009801:2898426:2907967290796729095231557Escherichia coli E24377A, complete genomesite-specific recombinase, resolvase family1e-70267
NC_009436:3117661:3127108312710831286641557Enterobacter sp. 638, complete genomerecombinase3e-69263
NC_010814:1441327:1443079144307914446831605Geobacter lovleyi SZ, complete genomeRecombinase5e-68259
NC_007404:359764:3656513656513666701020Thiobacillus denitrificans ATCC 25259, complete genomehypothetical protein4e-64246
NC_008686:405159:433296433296434282987Paracoccus denitrificans PD1222 chromosome 1, complete sequenceRecombinase2e-36154
NC_010338:650054:670289670289670762474Caulobacter sp. K31, complete genomeResolvase domain9e-23108
NC_014562:2563466:257245425724542573434981Pantoea vagans C9-1 chromosome, complete genomerecombinase1e-1895.1
NC_014217:800406:8029988029988047251728Starkeya novella DSM 506 chromosome, complete genomeResolvase domain protein3e-1790.1
NC_013552:207345:2073452073452090361692Dehalococcoides sp. VS, complete genomeresolvase domain protein, PinR type9e-1789
NC_014538:2158131:2183214218321421847341521Thermoanaerobacter sp. X513 chromosome, complete genomeRecombinase7e-1685.9
NC_013890:103807:1038071038071052641458Dehalococcoides sp. GT chromosome, complete genome9e-1685.5
NC_011365:1171536:1204634120463412063221689Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeResolvase domain1e-1585.1
NC_016627:793583:7976187976187991341517Clostridium clariflavum DSM 19732 chromosome, complete genome8e-1582.4
NC_010125:74904:8646786467880771611Gluconacetobacter diazotrophicus PAl 5, complete genome2e-1480.9
NC_009089:581655:6044276044276060281602Clostridium difficile 630, complete genomeconjugative transposon site-specific recombinase3e-1480.5
NC_008686:95326:9609496094977431650Paracoccus denitrificans PD1222 chromosome 1, complete sequenceRecombinase7e-1479.3
NC_009633:4097536:4102193410219341037581566Alkaliphilus metalliredigens QYMF chromosome, complete genomeresolvase domain-containing protein1e-1378.6
NC_013209:2582878:259456625945662595432867Acetobacter pasteurianus IFO 3283-01, complete genomeDNA resolvase1e-1378.2
NC_016027:2446806:2457542245754224592301689Gluconacetobacter xylinus NBRC 3288, complete genomeDNA resolvase3e-1377.4
NC_011365:1171536:1189109118910911908451737Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeResolvase domain3e-1377
NC_002936:1395432:1398114139811413997781665Dehalococcoides ethenogenes 195, complete genomeresolvase domain protein3e-1377
NC_007644:280000:2846452846452860961452Moorella thermoacetica ATCC 39073, complete genome3e-1377
NC_010125:955863:9679829679829696491668Gluconacetobacter diazotrophicus PAl 5, complete genomePutative DNA recombinase6e-1376.3
NC_021064:2001786:2010750201075020123061557Propionibacterium avidum 44067, complete genomeresolvase1e-1275.5
NC_015675:2247960:2274308227430822759331626Mesorhizobium opportunistum WSM2075 chromosome, complete genomeRecombinase2e-1274.3
NC_015976:2187377:2193567219356721952611695Sphingobium sp. SYK-6, complete genomeputative recombinase3e-1273.9
NC_002936:149100:1491001491001506321533Dehalococcoides ethenogenes 195, complete genomeresolvase domain protein5e-1273.2
NC_014614:2643203:2648799264879926504481650Clostridium sticklandii, complete genomesite-specific DNA recombinase (modular protein)5e-1273.2
NC_004668:2198027:2204960220496022065731614Enterococcus faecalis V583, complete genomesite-specific recombinase, resolvase family, putative9e-1272
NC_004461:1:4244142441440691629Staphylococcus epidermidis ATCC 12228, complete genomecassette chromosome recombinase B1e-1172
NC_016791:4038069:4038069403806940396341566Clostridium sp. BNL1100 chromosome, complete genomesite-specific recombinase, DNA invertase Pin1e-1172
NC_007432:654904:7003617003617017071347Streptococcus agalactiae A909, complete genomeprophage LambdaSa04, site-specific recombinase, resolvase family2e-1171.2
NC_016048:2873669:2897714289771428993811668Oscillibacter valericigenes Sjm18-20, complete genomeputative site-specific recombinase2e-1170.9
NC_011837:2605409:2628941262894126305301590Clostridium kluyveri NBRC 12016, complete genomehypothetical protein4e-1170.1
NC_009706:2673906:2697438269743826990271590Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein4e-1170.1
NC_012471:1197534:120630712063071207161855Streptococcus equi subsp. equi 4047, complete genomeconjugative transposon site-specific recombinase6e-1169.3
NC_010003:449192:4643804643804659481569Petrotoga mobilis SJ95, complete genomeResolvase domain6e-1169.3
NC_010337:2793667:2815262281526228168361575Heliobacterium modesticaldum Ice1, complete genomeDNA recombinase, putative1e-1068.9
NC_016627:4323370:4327812432781243293801569Clostridium clariflavum DSM 19732 chromosome, complete genomesite-specific recombinase, DNA invertase Pin8e-1168.9
NC_014623:2962330:2965469296546929666711203Stigmatella aurantiaca DW4/3-1 chromosome, complete genomerecombinase8e-1168.9
NC_010125:2998619:3006108300610830077691662Gluconacetobacter diazotrophicus PAl 5, complete genomeputative DNA recombinase8e-1168.9
NC_011830:2623346:2635003263500326365831581Desulfitobacterium hafniense DCB-2, complete genomeResolvase domain protein8e-1168.9
NC_009455:273519:3106353106353122811647Dehalococcoides sp. BAV1 chromosome, complete genomeresolvase domain-containing protein1e-1068.6
NC_016077:1944000:1956301195630119578181518Acidaminococcus intestini RyC-MR95 chromosome, complete genomesite-specific recombinase1e-1068.6
NC_016627:4270949:4288360428836042899281569Clostridium clariflavum DSM 19732 chromosome, complete genomesite-specific recombinase, DNA invertase Pin1e-1068.6
NC_013890:103807:1052911052911069101620Dehalococcoides sp. GT chromosome, complete genomeResolvase domain protein1e-1068.6
NC_009445:6621996:6670258667025866718681611Bradyrhizobium sp. ORS 278 chromosome, complete genomerecombinase2e-1067.8
NC_014410:800500:8355538355538371211569Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,Resolvase domain2e-1067.8
NC_014219:3188128:3199496319949632009321437Bacillus selenitireducens MLS10 chromosome, complete genomeResolvase domain protein2e-1067.4
NC_011898:3367457:3372756337275633743211566Clostridium cellulolyticum H10, complete genomeResolvase domain protein2e-1067.4
NC_015697:506494:5326675326675342531587Lactobacillus reuteri SD2112 chromosome, complete genomephage integrase family site-specific recombinase3e-1067
NC_015977:2874000:2893300289330028949851686Roseburia hominis A2-183 chromosome, complete genomesite-specific recombinase4e-1066.6
NC_011958:735755:7525167525167541351620Rhodobacter sphaeroides KD131 chromosome 2, complete genomehypothetical protein5e-1066.2
NC_014376:3547218:3566356356635635680141659Clostridium saccharolyticum WM1 chromosome, complete genomeRecombinase8e-1065.9
NC_014246:1402500:1412236141223614137981563Mobiluncus curtisii ATCC 43063 chromosome, complete genomesite-specific recombinase1e-0965.1
NC_014828:1019533:1033581103358110350531473Ethanoligenens harbinense YUAN-3 chromosome, complete genomeResolvase domain1e-0965.1
NC_014828:1987487:1994530199453019961131584Ethanoligenens harbinense YUAN-3 chromosome, complete genomeResolvase domain1e-0964.7
NC_014624:2668157:2710067271006727116891623Eubacterium limosum KIST612 chromosome, complete genomehypothetical protein2e-0964.7
NC_014393:4775452:4782362478236247839481587Clostridium cellulovorans 743B chromosome, complete genomeResolvase domain2e-0963.9
NC_009952:366959:3861373861373878131677Dinoroseobacter shibae DFL 12, complete genomerecombinase3e-0963.9
NC_015977:2445835:2452242245224224538281587Roseburia hominis A2-183 chromosome, complete genomehypothetical protein3e-0963.5
NC_014393:4775452:4783933478393347854381506Clostridium cellulovorans 743B chromosome, complete genomeResolvase domain3e-0963.5
NC_011365:1103927:1118847111884711205561710Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomerecombinase7e-0962.8
NC_015186:2197236:2233637223363722353371701Acidiphilium multivorum AIU301, complete genomeputative recombinase6e-0962.8
NC_017068:2661419:2688876268887626902761401Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative phage integrase6e-0962.8
NC_012491:3736167:3770304377030437719441641Brevibacillus brevis NBRC 100599, complete genomeputative integrase1e-0861.6
NC_018870:2316499:2364714236471423662821569Thermacetogenium phaeum DSM 12270 chromosome, complete genomeresolvase2e-0861.2
NC_015977:2309873:2331366233136623330421677Roseburia hominis A2-183 chromosome, complete genomesite-specific recombinase2e-0861.2
NC_011898:3367457:3370767337076733723381572Clostridium cellulolyticum H10, complete genomeResolvase domain protein2e-0860.8
NC_008687:302450:3066933066933083511659Paracoccus denitrificans PD1222 chromosome 2, complete sequenceRecombinase2e-0860.8
NC_010125:955863:9861399861399878451707Gluconacetobacter diazotrophicus PAl 5, complete genomeputative resolvase3e-0860.8
NC_006582:2944237:2992454299245429938571404Bacillus clausii KSM-K16, complete genomesite-specific recombinase for integration and excision3e-0860.5
NC_016048:4163225:4188450418845041900241575Oscillibacter valericigenes Sjm18-20, complete genomeputative recombinase4e-0860.1
NC_011837:2856500:2867138286713828683431206Clostridium kluyveri NBRC 12016, complete genomehypothetical protein4e-0860.1
NC_009706:2925000:2935636293563629368411206Clostridium kluyveri DSM 555 chromosome, complete genomerecombinase-like protein4e-0860.1
NC_015697:506494:5307365307365322891554Lactobacillus reuteri SD2112 chromosome, complete genomephage integrase family site-specific recombinase4e-0860.1
NC_012470:1390285:1409368140936814110501683Streptococcus equi subsp. zooepidemicus, complete genomesite-specific recombinase6e-0859.3
NC_009706:2673906:2695449269544926970201572Clostridium kluyveri DSM 555 chromosome, complete genomehypothetical protein8e-0858.9
NC_011837:2605409:2626952262695226285231572Clostridium kluyveri NBRC 12016, complete genomehypothetical protein8e-0858.9
NC_009720:900884:9144479144479164351989Xanthobacter autotrophicus Py2, complete genomerecombinase1e-0758.2
NC_015660:1076159:1079596107959610811491554Geobacillus thermoglucosidasius C56-YS93 chromosome, completeRecombinase2e-0758.2
NC_015186:2197236:2265156226515622667961641Acidiphilium multivorum AIU301, complete genomeputative recombinase2e-0758.2
NC_015186:2197236:2286288228628822879221635Acidiphilium multivorum AIU301, complete genomeputative recombinase2e-0757.8
NC_009668:445134:4623194623194639741656Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequencerecombinase2e-0757.8
NC_017068:1480148:1480148148014814823132166Selenomonas ruminantium subsp. lactilytica TAM6421, completeputative DNA recombinase2e-0757.8
NC_007296:1073784:1081126108112610828051680Streptococcus pyogenes MGAS6180, complete genomesite-specific recombinase3e-0757.4
NC_010163:614634:6146346146346163521719Acholeplasma laidlawii PG-8A chromosome, complete genomeserine recombinase3e-0757.4
NC_010125:2884762:2898971289897129007551785Gluconacetobacter diazotrophicus PAl 5, complete genomeputative DNA recombinase5e-0756.6
NC_015977:3424178:3471184347118434730311848Roseburia hominis A2-183 chromosome, complete genomesite-specific recombinase7e-0755.8
NC_012891:1277966:1294765129476512966031839Streptococcus dysgalactiae subsp. equisimilis GGS_124 chromosome 1,putative site-specific recombinase1e-0655.1
NC_015737:831792:8446598446598463021644Clostridium sp. SY8519, complete genomehypothetical protein2e-0654.7
NC_014639:1894500:1900994190099419029851992Bacillus atrophaeus 1942 chromosome, complete genomeresolvase domain-containing protein6e-0652.8
CP002207:1894500:1900994190099419029851992Bacillus atrophaeus 1942, complete genomeResolvase domain protein6e-0652.8