Pre_GI: BLASTP Hits

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Query: NC_017249:1476500:1492665 Bradyrhizobium japonicum USDA 6, complete genome

Start: 1492665, End: 1494341, Length: 1677

Host Lineage: Bradyrhizobium japonicum; Bradyrhizobium; Bradyrhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This nitrogen-fixing bacterium develops a symbiotic relationship with the soybean plant Glycine max and is related to other N2-fixing Rhizobia which are symbiotic with legumes. The bacterium establishes itself in a root nodule which provides a protective environment for the organism to live while the bacterium provides the plant cell with nitrogen. This is an agriculturally important symbiotic relationship as it obviates the need for expensive and environmentally damaging fertilizer.Genes that code for proteins involved in root nodulation are carried on the chromosome. The production of the nodulation signal, lipochitin, is directed by genes which are turned on in the presence of plant flavonoid compounds. The bacteria are endocytosed into a cortical cell, and are enclosed within a membrane bound organelle termed the symbiosome.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010514:6000:93049304110431740Methylobacterium radiotolerans JCM 2831 plasmid pMRAD03, completeTRAG family protein4e-101369
NC_015259:485015:5308405308405323061467Polymorphum gilvum SL003B-26A1 chromosome, complete genomePlasmid transfer factor, traG4e-25116
NC_015259:734795:7358277358277374221596Polymorphum gilvum SL003B-26A1 chromosome, complete genomePlasmid transfer factor, traG5e-24113
NC_015259:673662:6761806761806777571578Polymorphum gilvum SL003B-26A1 chromosome, complete genomePlasmid transfer factor, traG1e-21105
NC_014816:1592799:1596795159679515984711677Asticcacaulis excentricus CB 48 chromosome 1, complete sequencetrag family protein1e-21104
NC_016010:1822212:1863335186333518650321698Xanthomonas axonopodis pv. citrumelo F1 chromosome, completetype IV secretion system protein VirD41e-1998.2
NC_007086:2887875:2924209292420929259061698Xanthomonas campestris pv. campestris str. 8004, complete genomeputative NTPase VagA2e-1997.8
NC_014816:545441:5663965663965680721677Asticcacaulis excentricus CB 48 chromosome 1, complete sequencetrag family protein2e-1997.4
NC_015259:3902136:3905033390503339071922160Polymorphum gilvum SL003B-26A1 chromosome, complete genomeTraG/TraD family protein3e-1997.1
NC_016929:825413:8369198369198386941776Rickettsia canadensis str. CA410 chromosome, complete genometype IV secretion system protein VirB84e-1996.7
NC_009879:835227:8468038468038485781776Rickettsia canadensis str. McKiel, complete genomehypothetical protein4e-1996.7
NC_017271:4058642:4069267406926740709701704Xanthomonas campestris pv. raphani 756C chromosome, completetype IV secretion system protein VirD47e-1995.9
NC_017271:149856:1689951689951705751581Xanthomonas campestris pv. raphani 756C chromosome, completetype IV secretion system protein VirD41e-1895.1
NC_007798:652317:6585716585716604961926Neorickettsia sennetsu str. Miyayama, complete genometype IV secretion system protein VirD42e-1894.7
NC_015942:1947258:1965686196568619681812496Acidithiobacillus ferrivorans SS3 chromosome, complete genomeTRAG family protein3e-1894
NC_007925:3933765:3946807394680739488011995Rhodopseudomonas palustris BisB18, complete genomeTRAG protein5e-1893.2
NC_010995:1417329:1440148144014814418331686Cellvibrio japonicus Ueda107, complete genomeTraG/TraD family1e-1792
NC_015381:2859000:2881633288163328836362004Burkholderia gladioli BSR3 chromosome 1, complete sequenceconjugal transfer protein TraG2e-1791.3
NC_013132:7954000:7963702796370279654681767Chitinophaga pinensis DSM 2588, complete genomeTRAG family protein3e-1790.5
NC_005295:21995:3116531165335702406Ehrlichia ruminantium str. Welgevonden, complete genometype IV secretion system protein VirD44e-1790.1
NC_006831:4500:1217012170145722403Ehrlichia ruminantium str. Gardel, complete genomePutative virD4 protein4e-1790.1
NC_011987:53760:5376053760561232364Agrobacterium radiobacter K84 plasmid pAtK84c, complete sequenceTRAG protein6e-1789.4
NC_015942:722980:7396097396097418762268Acidithiobacillus ferrivorans SS3 chromosome, complete genomeTRAG family protein7e-1789.4
NC_014414:2540189:2553515255351525553531839Parvularcula bermudensis HTCC2503 chromosome, complete genomeconjugal transfer protein traG8e-1789
NC_002978:4973:82698269102151947Wolbachia endosymbiont of Drosophila melanogaster, complete genometype IV secretion system protein VirD41e-1688.6
NC_007797:1451804:1460198146019814624202223Anaplasma phagocytophilum HZ, complete genometype IV secretion system protein VirD41e-1688.2
NC_015221:12389:3188831888337321845Nitrosomonas sp. AL212 plasmid pNAL21202, complete sequenceTRAG family protein2e-1687.8
NC_016814:18000:3264032640347392100Sinorhizobium fredii HH103 plasmid pSfHH103c complete sequenceProtein virD42e-1687.4
NC_013422:1755875:1779991177999117824622472Halothiobacillus neapolitanus c2, complete genomeTRAG family protein3e-1687
NC_012416:4973:83058305103232019Wolbachia sp. wRi, complete genometype IV secretion system protein VirD43e-1687
NC_011365:1135750:1154211115421111561931983Gluconacetobacter diazotrophicus PAl 5 chromosome, complete genomeconjugal transfer coupling protein TraG4e-1686.7
NC_005090:1033746:1045289104528910471001812Wolinella succinogenes DSM 1740, complete genomeCONJUGAL TRANSFER PROTEIN (TRAG)5e-1686.7
NC_014100:2782000:2795208279520827971601953Caulobacter segnis ATCC 21756 chromosome, complete genomeTRAG family protein6e-1686.3
NC_013532:85371:8641786417888432427Anaplasma centrale str. Israel, complete genometype IV secretion system protein VirD49e-1685.5
NC_017249:18493:3729937299392811983Bradyrhizobium japonicum USDA 6, complete genomeconjugal transfer protein1e-1585.5
NC_012026:1135041:1159067115906711614872421Anaplasma marginale str. Florida, complete genomeVirD4 protein (virD4)1e-1585.5
NC_004842:1132441:1154957115495711573772421Anaplasma marginale str. St. Maries, complete genomeVirD4 protein1e-1585.5
NC_010338:2443765:2450624245062424523451722Caulobacter sp. K31, complete genomeTRAG family protein1e-1585.1
NC_004463:18497:3730537305393322028Bradyrhizobium japonicum USDA 110, complete genomeconjugal transfer protein1e-1584.7
NC_018691:3082000:3095819309581930978222004Alcanivorax dieselolei B5 chromosome, complete genomeTraG-like protein2e-1584.3
NC_014834:959986:9681419681419701261986Rhodopseudomonas palustris DX-1 chromosome, complete genomeTRAG family protein2e-1584.3
NC_015850:169180:1721031721031744572355Acidithiobacillus caldus SM-1 chromosome, complete genomeTRAG family protein3e-1584
NC_014910:2930860:2935496293549629375022007Alicycliphilus denitrificans BC chromosome, complete genometrag family protein4e-1583.6
NC_006371:1743982:1769029176902917708911863Photobacterium profundum SS9 chromosome 2, complete sequencehypothetical protein TraG5e-1583.2
NC_012982:711122:7139907139907159751986Hirschia baltica ATCC 49814, complete genomeTRAG family protein5e-1583.2
NC_019973:5716453:5719735571973557214801746Mesorhizobium australicum WSM2073, complete genometype IV secretory pathway, VirD4 component9e-1582.4
NC_014923:5787493:5790775579077557925201746Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeTRAG family protein9e-1582.4
NC_015675:6342164:6345446634544663471911746Mesorhizobium opportunistum WSM2075 chromosome, complete genomeTRAG family protein9e-1582.4
NC_011059:670345:6749096749096770952187Prosthecochloris aestuarii DSM 271, complete genome1e-1482
NC_008577:1489643:1491078149107814930751998Shewanella sp. ANA-3 chromosome 1, complete sequenceTRAG family protein1e-1482
NC_010125:2998619:3001295300129530033162022Gluconacetobacter diazotrophicus PAl 5, complete genomeputative conjugal transfer protein traG1e-1482
NC_015556:2265940:2270422227042222724131992Pseudomonas fulva 12-X chromosome, complete genomeTRAG family protein2e-1481.3
NC_009719:1972545:1984249198424919863122064Parvibaculum lavamentivorans DS-1 chromosome, complete genomeconjugal transfer coupling protein TraG3e-1480.5
NC_009720:4406991:4434900443490044368791980Xanthobacter autotrophicus Py2, complete genomeconjugal transfer coupling protein TraG5e-1479.7
NC_014910:242845:2432882432882452912004Alicycliphilus denitrificans BC chromosome, complete genometrag family protein6e-1479.7
NC_005956:1521736:1523533152353315254521920Bartonella henselae str. Houston-1, complete genomeConjugal transfer protein trag2e-1378.2
NC_003295:2787371:2792029279202927940562028Ralstonia solanacearum GMI1000, complete genomePROBABLE PLASMID CONJUGATION TRAG TRANSMEMBRANE PROTEIN2e-1377.8
NC_010943:1332243:1334372133437213363722001Stenotrophomonas maltophilia K279a, complete genomeputative conjugal transfer protein3e-1377
NC_007508:3183631:3196116319611631977891674Xanthomonas campestris pv. vesicatoria str. 85-10, complete genometype IV secretion system protein VirD41e-1275.1
NC_003919:3060484:3088230308823030899031674Xanthomonas axonopodis pv. citri str. 306, complete genomeVirD4 protein1e-1275.1
NC_010688:1908012:1928821192882119304941674Xanthomonas campestris pv. campestris, complete genometype IV secretion system coupling protein VirD41e-1275.1
NC_013131:10322152:1035461310354613103564541842Catenulispora acidiphila DSM 44928, complete genomeconjugative transfer gene complex protein1e-1275.1
NC_017271:2935643:2973196297319629748631668Xanthomonas campestris pv. raphani 756C chromosome, completeVirD4 protein1e-1275.1
NC_010002:2933909:2969111296911129711202010Delftia acidovorans SPH-1, complete genomeTRAG family protein2e-1274.7
NC_007086:1936505:1956087195608719577601674Xanthomonas campestris pv. campestris str. 8004, complete genomeVirD4 protein2e-1274.7
NC_003902:2933121:2952459295245929541321674Xanthomonas campestris pv. campestris str. ATCC 33913, completeVirD4 protein2e-1274.7
NC_005955:1259393:1261086126108612630051920Bartonella quintana str. Toulouse, complete genomeConjugal transfer protein traG3e-1273.9
NC_009445:6621996:6633769663376966353851617Bradyrhizobium sp. ORS 278 chromosome, complete genomeVirD4/TraG family protein5e-1273.2
NC_011071:2733438:2754506275450627561851680Stenotrophomonas maltophilia R551-3, complete genomeTRAG family protein7e-1272.8
NC_020301:1449616:1454783145478314567021920Bartonella vinsonii subsp. berkhoffii str. Winnie, complete genomeconjugal transfer protein TraG/VirD41e-1172
NC_011992:3752867:3757497375749737595002004Acidovorax ebreus TPSY, complete genomeTRAG family protein1e-1171.6
NC_010943:3034366:3052785305278530544641680Stenotrophomonas maltophilia K279a, complete genomeputative transmembrane conjugative DNA transfer protein2e-1171.2
NC_015603:1:1070110701122211521Lactobacillus kefiranofaciens ZW3 plasmid pWW2, complete sequenceprotein Trs3e-1170.5
NC_003902:4111283:412570441257044126417714Xanthomonas campestris pv. campestris str. ATCC 33913, completeNTPase6e-1169.7
NC_015947:2752450:2772897277289727745761680Burkholderia sp. JV3 chromosome, complete genomeTRAG family protein6e-1169.3
NC_010161:1811000:1811015181101518129311917Bartonella tribocorum CIP 105476, complete genomeVirD4 protein7e-1169.3
NC_012846:1679184:1680973168097316828891917Bartonella grahamii as4aup, complete genomeconjugal transfer protein TraG/VirD44e-1067
NC_014555:502151:5042555042555065012247Helicobacter pylori PeCan4 chromosome, complete genomecag pathogenicity island protein Beta1e-0965.5
NC_017359:813500:8271658271658294112247Helicobacter pylori Sat464 chromosome, complete genomecag pathogenicity island protein (cag beta, cag5)2e-0965.1
NC_017366:535188:5374575374575397032247Helicobacter pylori F32, complete genomecag pathogenicity island protein2e-0964.7
NC_017360:1052473:1066497106649710687432247Helicobacter pylori 35A chromosome, complete genomecag pathogenicity island protein2e-0964.7
NC_017381:500699:5031405031405053862247Helicobacter pylori 2018 chromosome, complete genomeType IV secretion system protein2e-0964.7
NC_017365:848500:8627828627828650282247Helicobacter pylori F30, complete genomecag pathogenicity island protein2e-0964.7
NC_017357:495213:5018985018985041442247Helicobacter pylori 908 chromosome, complete genometype IV secretion protein2e-0964.7
NC_018939:547793:5502275502275524732247Helicobacter pylori 26695 chromosome, complete genomecag pathogenicity island protein Beta2e-0964.7
NC_000915:547783:5502175502175524632247Helicobacter pylori 26695, complete genomecag pathogenicity island protein (cag5)2e-0964.7
NC_017368:852490:8662018662018684472247Helicobacter pylori F16, complete genomecag pathogenicity island protein2e-0964.7
NC_017371:530673:5331165331165353622247Helicobacter pylori Gambia94/24 chromosome, complete genomeCAG pathogenicity island protein 52e-0964.7
NC_009254:365812:3745933745933763111719Burkholderia vietnamiensis G4 chromosome 3, complete sequenceTRAG family protein2e-0964.7
NC_017362:506950:5092785092785115242247Helicobacter pylori Lithuania75 chromosome, complete genomecag pathogenicity island protein 52e-0964.7
NC_017355:493237:4958944958944981402247Helicobacter pylori v225d chromosome, complete genomecag pathogenicity island protein (cagb)2e-0964.7
NC_017358:563336:5654325654325676782247Helicobacter pylori Cuz20 chromosome, complete genomecag pathogenicity island protein (cag beta, cag5)2e-0964.7
NC_010698:819912:8399718399718422172247Helicobacter pylori Shi470, complete genomecag pathogenicity island protein 52e-0964.7
NC_017354:848500:8627168627168649622247Helicobacter pylori 52 chromosome, complete genomecag pathogenicity island protein 52e-0964.7
NC_017379:505350:5077785077785100242247Helicobacter pylori Puno135 chromosome, complete genomeCAG pathogenicity island protein 52e-0964.7
NC_017376:538000:5418255418255440712247Helicobacter pylori SNT49 chromosome, complete genomeCAG pathogenicity island protein 52e-0964.7
NC_014256:683384:6972886972886995342247Helicobacter pylori B8 chromosome, complete genomecag pathogenicity island protein beta2e-0964.7
NC_017375:872478:8861958861958884412247Helicobacter pylori 83 chromosome, complete genomecag pathogenicity island protein2e-0964.7
NC_017372:855384:8690948690948713402247Helicobacter pylori India7 chromosome, complete genomecag pathogenicity island protein Beta2e-0964.7
NC_013722:2810721:2835935283593528376291695Xanthomonas albilineans, complete genomeputative type iv secretory pathway, conjugal transfer protein2e-0964.3
NC_013722:3081459:3101807310180731035011695Xanthomonas albilineans, complete genomeputative type iv secretory pathway, conjugal transfer protein2e-0964.3
NC_011333:514464:5167935167935190392247Helicobacter pylori G27 chromosome, complete genomecag pathogenicity island protein 52e-0964.3
NC_011498:553525:5559635559635582092247Helicobacter pylori P12, complete genomecag pathogenicity island protein Beta2e-0964.3
NC_017367:562918:5651905651905674362247Helicobacter pylori F57, complete genomecag pathogenicity island protein2e-0964.3
NC_010510:339879:3603633603633623541992Methylobacterium radiotolerans JCM 2831 plasmid pMRAD01, completeTRAG family protein4e-0963.5
NC_008086:513407:5162415162415184872247Helicobacter pylori HPAG1, complete genomecag pathogenicity island protein 56e-0963.2
NC_017374:498588:5010295010295032752247Helicobacter pylori 2017 chromosome, complete genomeType IV secretion system protein6e-0963.2
NC_017063:800156:8030308030308052762247Helicobacter pylori ELS37 chromosome, complete genomeCAG pathogenicity island protein 57e-0962.8
NC_014560:518582:5325215325215347672247Helicobacter pylori SJM180 chromosome, complete genomecag island protein, DNA transfer protein7e-0962.8
NC_000921:511642:5140885140885163342247Helicobacter pylori J99, complete genomecag island protein, DNA transfer protein6e-0962.8
NC_018524:3075000:3087918308791830893121395Nocardiopsis alba ATCC BAA-2165 chromosome, complete genometype IV secretory system Conjugative DNA transfer family protein1e-0861.6
NC_015385:1875671:1881537188153718836842148Treponema succinifaciens DSM 2489 chromosome, complete genomeTRAG family protein4e-0860.1
NC_017361:1528239:1543901154390115460332133Helicobacter pylori SouthAfrica7 chromosome, complete genomeconjugal transfer protein (traG)1e-0758.5
NC_007643:955362:968844968844969686843Rhodospirillum rubrum ATCC 11170, complete genome2e-0757.8
NC_015259:624979:6392366392366412031968Polymorphum gilvum SL003B-26A1 chromosome, complete genomePlasmid transfer factor; TraG3e-0757.4
NC_017357:973392:9884039884039901451743Helicobacter pylori 908 chromosome, complete genomehypothetical protein4e-0757
NC_017374:974279:9892909892909910321743Helicobacter pylori 2017 chromosome, complete genomeputative conjugal transfer protein4e-0757
NC_017381:982216:9972459972459989871743Helicobacter pylori 2018 chromosome, complete genomeconjugal transfer protein4e-0757
NC_010515:1124298:1127230112723011289421713Burkholderia cenocepacia MC0-3 chromosome 2, complete sequenceTRAG family protein4e-0757
NC_015259:485015:5024025024025044262025Polymorphum gilvum SL003B-26A1 chromosome, complete genomePlasmid transfer factor, traG6e-0756.2
NC_008061:2106848:2109780210978021114531674Burkholderia cenocepacia AU 1054 chromosome 2, complete sequenceTRAG protein8e-0755.8
NC_015259:673662:7045567045567065712016Polymorphum gilvum SL003B-26A1 chromosome, complete genomePlasmid transfer factor; TraG1e-0655.5
NC_017361:930280:9572629572629590071746Helicobacter pylori SouthAfrica7 chromosome, complete genomeVirD4 coupling protein1e-0655.5
NC_017371:1030148:1043680104368010454281749Helicobacter pylori Gambia94/24 chromosome, complete genomeVirD4 coupling protein1e-0655.1
NC_015437:697051:7214467214467238392394Selenomonas sputigena ATCC 35185 chromosome, complete genomeTRAG family protein1e-0655.1
NC_007644:362000:3679313679313699161986Moorella thermoacetica ATCC 39073, complete genomeTRAG protein1e-0655.1