Pre_GI: BLASTN Hits

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Query: NC_017221:535000 Bifidobacterium longum subsp. longum KACC 91563 chromosome,

Start: 535000, End: 562785, Length: 27786

Host Lineage: Bifidobacterium longum; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Representatives of this genus naturally colonize the human gastrointestinal tract (GIT) and are important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. Their presence has been associated with beneficial health effects, such as prevention of diarrhea, amelioration of lactose intolerance, or immunomodulation. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacteria to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Most of the ~30 known species of bifidobacteria have been isolated from the mammalian GIT, and some from the vaginal and oral cavity. All are obligate anaerobes belonging to the Actinomycetales, branch of Gram-positive bacteria with high GC content that also includes Corynebacteria, Mycobacteria, and Streptomycetes. This organism is found in adult humans and formula fed infants as a normal component of gut flora




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004307:2208591*2208591223691728327Bifidobacterium longum NCC2705, complete genome017240BLASTN svgBLASTP svg
NC_010816:2326453*2326453235368827236Bifidobacterium longum DJO10A, complete genome016050BLASTN svgBLASTP svg
NC_015052:1771976*1771976180028328308Bifidobacterium longum subsp. infantis 157F, complete genome08266BLASTN svgBLASTP svg
NC_008618:1456000*1456000148109925100Bifidobacterium adolescentis ATCC 15703, complete genome02391BLASTN svgBLASTP svg
NC_013714:1830959*1830959185793126973Bifidobacterium dentium Bd1, complete genome01895BLASTN svgBLASTP svg
NC_018750:3481476*3481476351379932324Streptomyces venezuelae ATCC 10712, complete genome1e-58236BLASTN svgBLASTP svg
NC_010688:38700038700041036023361Xanthomonas campestris pv. campestris, complete genome1e-36163BLASTN svgBLASTP svg
NC_014550:14870621487062150515118090Arthrobacter arilaitensis Re117, complete genome1e-36163BLASTN svgBLASTP svg
NC_010617:26398526398528723123247Kocuria rhizophila DC2201, complete genome2e-35159BLASTN svgBLASTP svg
NC_007086:39672339672342172325001Xanthomonas campestris pv. campestris str. 8004, complete genome3e-34155BLASTN svgBLASTP svg
NC_003902:39600039600042428128282Xanthomonas campestris pv. campestris str. ATCC 33913, complete3e-34155BLASTN svgBLASTP svg
NC_014844:903877*90387792643122555Desulfovibrio aespoeensis Aspo-2 chromosome, complete genome2e-26129BLASTN svgBLASTP svg
NC_014013:301184*30118432635025167Sphingobium japonicum UT26S chromosome 2, complete genome6e-23117BLASTN svgBLASTP svg
NC_008358:79839079839083934340954Hyphomonas neptunium ATCC 15444, complete genome3e-22115BLASTN svgBLASTP svg
NC_015312:3675148*3675148374606470917Pseudonocardia dioxanivorans CB1190 chromosome, complete genome2e-20109BLASTN svgBLASTP svg
NC_013715:1207774*1207774124878041007Rothia mucilaginosa DY-18, complete genome6e-20107BLASTN svgBLASTP svg
NC_021184:56965356965359100021348Desulfotomaculum gibsoniae DSM 7213, complete genome1e-18103BLASTN svgBLASTP svg
NC_014541:643604*64360466816624563Ferrimonas balearica DSM 9799 chromosome, complete genome1e-18103BLASTN svgBLASTP svg
NC_006361:25341922534192255470320512Nocardia farcinica IFM 10152, complete genome4e-18101BLASTN svgBLASTP svg
NC_009832:45215854521585455112429540Serratia proteamaculans 568, complete genome4e-18101BLASTN svgBLASTP svg
NC_014623:2475598*2475598249759922002Stigmatella aurantiaca DW4/3-1 chromosome, complete genome4e-18101BLASTN svgBLASTP svg
NC_011769:37124973712497373232819832Desulfovibrio vulgaris str. 'Miyazaki F', complete genome1e-1799.6BLASTN svgBLASTP svg
NC_015593:203000*20300023519632197Sphingobium chlorophenolicum L-1 chromosome chromosome 1, complete2e-1695.6BLASTN svgBLASTP svg
NC_010645:36940836940840678237375Bordetella avium 197N, complete genome9e-1693.7BLASTN svgBLASTP svg
NC_015563:11294691129469116017830710Delftia sp. Cs1-4 chromosome, complete genome9e-1693.7BLASTN svgBLASTP svg
NC_009439:44289044289048900846119Pseudomonas mendocina ymp, complete genome4e-1591.7BLASTN svgBLASTP svg
NC_014006:12045001204500122366719168Sphingobium japonicum UT26S chromosome 1, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_007512:77197577197581463242658Pelodictyon luteolum DSM 273, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_015578:32668553266855328938922535Treponema primitia ZAS-2 chromosome, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_014323:52191545219154524211822965Herbaspirillum seropedicae SmR1 chromosome, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_008260:29612912961291298426722977Alcanivorax borkumensis SK2, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_010545:14754101475410151427238863Corynebacterium urealyticum DSM 7109, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_013522:16833261683326171309929774Thermanaerovibrio acidaminovorans DSM 6589, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_015052:47194447194450736635423Bifidobacterium longum subsp. infantis 157F, complete genome4e-1281.8BLASTN svgBLASTP svg
NC_020302:74495674495677609931144Corynebacterium halotolerans YIM 70093 = DSM 44683, complete1e-1179.8BLASTN svgBLASTP svg
NC_009648:4656187*4656187467706020874Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_009831:51079245107924512773319810Shewanella sediminis HAW-EB3, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_013170:311045*31104535303541991Cryptobacterium curtum DSM 15641, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_013159:2913927*2913927293423220306Saccharomonospora viridis DSM 43017, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_014828:2657623*2657623268107823456Ethanoligenens harbinense YUAN-3 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_014933:39421563942156397076528610Bacteroides helcogenes P 36-108 chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_015520:224136*22413626409939964Mahella australiensis 50-1 BON chromosome, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_015732:30173873017387304410826722Spirochaeta caldaria DSM 7334 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013205:2610956*2610956266117350218Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446,2e-0765.9BLASTN svgBLASTP svg
NC_015873:14871271487127150821921093Megasphaera elsdenii DSM 20460, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_015061:38019273801927382632824402Rahnella sp. Y9602 chromosome, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_013385:1064188*1064188108859924412Ammonifex degensii KC4, complete genome3e-0661.9BLASTN svgBLASTP svg