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Query: NC_017217:23000 Bifidobacterium animalis subsp. lactis V9 chromosome, complete

Start: 23000, End: 53442, Length: 30443

Host Lineage: Bifidobacterium animalis; Bifidobacterium; Bifidobacteriaceae; Bifidobacteriales; Actinobacteria; Bacteria

General Information: Representatives of this genus naturally colonize the human gastrointestinal tract (GIT) and are important for establishing and maintaining homeostasis of the intestinal ecosystem to allow for normal digestion. Their presence has been associated with beneficial health effects, such as prevention of diarrhea, amelioration of lactose intolerance, or immunomodulation. The stabilizing effect on GIT microflora is attributed to the capacity of bifidobacteria to produce bacteriocins, which are bacteriostatic agents with a broad spectrum of action, and to their pH-reducing activity. Most of the ~30 known species of bifidobacteria have been isolated from the mammalian GIT, and some from the vaginal and oral cavity. All are obligate anaerobes belonging to the Actinomycetales, branch of Gram-positive bacteria with high GC content that also includes Corynebacteria, Mycobacteria, and Streptomycetes. Bifidobacterium animalis and Bifidobacterium lactis were originally considered to be separate species. Recent studies evaluating the DNA relatedness and phenotypic similarities of these species has determined that they represent a single species.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_012814:23000230005344230443Bifidobacterium animalis subsp. lactis Bl-04, complete genome060270BLASTN svgBLASTP svg
NC_012815:23000230005344230443Bifidobacterium animalis subsp. lactis DSM 10140, complete genome060250BLASTN svgBLASTP svg
NC_015588:18475001847500187818330684Isoptericola variabilis 225 chromosome, complete genome6e-1487.7BLASTN svgBLASTP svg
NC_008699:22606062260606228821627611Nocardioides sp. JS614, complete genome6e-1177.8BLASTN svgBLASTP svg
NC_009921:36668983666898374071873821Frankia sp. EAN1pec, complete genome9e-1073.8BLASTN svgBLASTP svg
NC_007434:78850078850080659718098Burkholderia pseudomallei 1710b chromosome I, complete sequence4e-0971.9BLASTN svgBLASTP svg
NC_006350:59589359589364981453922Burkholderia pseudomallei K96243 chromosome 1, complete sequence4e-0971.9BLASTN svgBLASTP svg
NC_009921:52200052200056210240103Frankia sp. EAN1pec, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013714:1521404*1521404154642725024Bifidobacterium dentium Bd1, complete genome4e-0661.9BLASTN svgBLASTP svg