Pre_GI: BLASTP Hits

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Query: NC_017179:446564:464782 Clostridium difficile BI1, complete genome

Start: 464782, End: 465300, Length: 519

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009089:478328:478328478328479050723Clostridium difficile 630, complete genomeputative RNA pseudouridine synthase2e-93341
NC_010320:1805818:181440418144041815126723Thermoanaerobacter sp. X514 chromosome, complete genomepseudouridine synthase1e-57221
NC_014538:33718:501145011450836723Thermoanaerobacter sp. X513 chromosome, complete genomepseudouridine synthase1e-57221
NC_008262:2433979:246534424653442466063720Clostridium perfringens SM101, complete genome16S pseudouridylate synthase6e-55213
NC_014410:51711:716907169072415726Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,RNA-binding S4 domain protein3e-54210
NC_014964:2237979:224715022471502247875726Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completepseudouridine synthase3e-54210
NC_015958:57957:718017180172526726Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomepseudouridine synthase Rsu3e-54210
NC_010321:2256758:226000722600072260732726Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completepseudouridine synthase3e-54210
NC_019970:35985:575805758058305726Thermoanaerobacterium thermosaccharolyticum M0795, complete genomepseudouridine synthase family protein5e-54209
NC_014209:81643:110590110590111312723Thermoanaerobacter mathranii subsp. mathranii str. A3 chromosome,RNA-binding S4 domain protein1e-52205
NC_015555:49842:707637076371485723Thermoanaerobacterium xylanolyticum LX-11 chromosome, completepseudouridine synthase Rsu3e-52204
NC_013921:36000:523525235253074723Thermoanaerobacter italicus Ab9 chromosome, complete genomeRNA-binding S4 domain protein5e-52203
NC_004193:2342528:234404723440472344760714Oceanobacillus iheyensis HTE831, complete genome16S pseudouridine synthase2e-49194
NC_007929:473500:494432494432495154723Lactobacillus salivarius subsp. salivarius UCC118, complete genomeRibosomal small subunit pseudouridine synthase A2e-45181
NC_007296:1073784:107519310751931075927735Streptococcus pyogenes MGAS6180, complete genomeribosomal small subunit pseudouridine synthase A1e-44178
NC_015975:1493636:149292714929271493649723Lactobacillus ruminis ATCC 27782 chromosome, complete genomeribosomal small subunit pseudouridine synthase A1e-43175
NC_007168:1167454:119082511908251191517693Staphylococcus haemolyticus JCSC1435, complete genome16S rRNA uridine-516 pseudouridylate synthase and related Pseudouridylate synthase4e-41167
NC_017342:1462297:147786514778651478560696Staphylococcus aureus subsp. aureus TCH60 chromosome, completeribosomal small subunit pseudouridine synthase A3e-39160
NC_002952:1917999:192005319200531920748696Staphylococcus aureus subsp. aureus MRSA252, complete genomeRNA pseudouridine synthase3e-39160
NC_016941:1774000:177451717745171775212696Staphylococcus aureus subsp. aureus MSHR1132, complete genomeRNA pseudouridine synthase4e-39160
NC_012438:50845:686016860169203603Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomeribosomal small subunit pseudouridine synthase A5e-39160
NC_002745:1804000:180481518048151805510696Staphylococcus aureus subsp. aureus N315, complete genomehypothetical protein7e-39159
NC_002951:1848684:185145218514521852147696Staphylococcus aureus subsp. aureus COL, complete genomepseudouridine synthase, family 17e-39159
NC_009782:1881722:188412818841281884823696Staphylococcus aureus subsp. aureus Mu3, complete genomehypothetical protein7e-39159
NC_007795:1774725:177743717774371778132696Staphylococcus aureus subsp. aureus NCTC 8325, complete genomeribosomal small subunit pseudouridine synthase A, putative7e-39159
NC_002758:1880323:188272918827291883424696Staphylococcus aureus subsp. aureus Mu50, complete genomesimilar to 16S psudouridylate synthase7e-39159
NC_007793:1871165:187376318737631874458696Staphylococcus aureus subsp. aureus USA300, complete genomepseudouridine synthase, family 17e-39159
NC_016928:1843597:184612218461221846817696Staphylococcus aureus subsp. aureus M013 chromosome, completeribosomal small subunit pseudouridine synthase A8e-39159
NC_017337:1829840:183217718321771832872696Staphylococcus aureus subsp. aureus ED133 chromosome, completepseudouridine synthase, family 11e-38159
NC_010079:1871915:187451318745131875208696Staphylococcus aureus subsp. aureus USA300_TCH1516, completepseudouridylate synthase7e-39159
NC_009487:1925645:192793719279371928632696Staphylococcus aureus subsp. aureus JH9 chromosome, completepseudouridine synthase7e-39159
NC_009632:1927372:192781119278111928506696Staphylococcus aureus subsp. aureus JH1 chromosome, completepseudouridine synthase7e-39159
NC_017351:1869287:187134018713401872035696Staphylococcus aureus subsp. aureus 11819-97 chromosome, completepseudouridine synthase family protein6e-39159
NC_017338:1830790:183122918312291831924696Staphylococcus aureus subsp. aureus JKD6159 chromosome, completeribosomal small subunit pseudouridine synthase A6e-39159
NC_017347:1852500:185368718536871854382696Staphylococcus aureus subsp. aureus T0131 chromosome, completePseudouridine synthase7e-39159
NC_017343:1748620:175102617510261751721696Staphylococcus aureus subsp. aureus ECT-R 2, complete genomehypothetical protein7e-39159
NC_017341:1851972:185453318545331855228696Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,ribosomal small subunit pseudouridine synthase A7e-39159
NC_016912:1732354:173506617350661735761696Staphylococcus aureus subsp. aureus VC40 chromosome, completepseudouridine synthase family 1 protein7e-39159
NC_013450:1825010:182741618274161828111696Staphylococcus aureus subsp. aureus ED98, complete genomepseudouridine synthase family 1 protein7e-39159
NC_009641:1833000:183429318342931834988696Staphylococcus aureus subsp. aureus str. Newman chromosome,ribosomal small subunit pseudouridine synthase A7e-39159
NC_007622:1751500:175231117523111753006696Staphylococcus aureus RF122, complete genome16S RNA pseudouridylate synthase2e-38157
NC_004461:1465397:146539714653971466089693Staphylococcus epidermidis ATCC 12228, complete genome16S pseudouridylate synthase1e-37155
NC_002976:1361364:136136413613641362056693Staphylococcus epidermidis RP62A, complete genomepseudouridine synthase, family 11e-37155
NC_002953:1819411:182195218219521822647696Staphylococcus aureus subsp. aureus MSSA476, complete genomeRNA pseudouridine synthase4e-37153
NC_003923:1841500:184261618426161843311696Staphylococcus aureus subsp. aureus MW2, complete genomehypothetical protein4e-37153
NC_015387:2042042:204470920447092045440732Marinithermus hydrothermalis DSM 14884 chromosome, complete genomepseudouridine synthase Rsu1e-36152
NC_015424:2917817:293437029343702935062693Aeromonas veronii B565 chromosome, complete genomePseudouridine synthase1e-34145
NC_016816:1545354:157875515787551579474720Pantoea ananatis LMG 5342, complete genome16S rRNA pseudouridylate synthase A6e-34143
NC_016745:546249:560331560331561017687Oceanimonas sp. GK1 chromosome, complete genomepseudouridine synthase4e-33140
NC_014618:1593360:161091016109101611617708Enterobacter cloacae SCF1 chromosome, complete genomepseudouridine synthase2e-32138
NC_010102:683444:721413721413722108696Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein3e-32137
NC_010067:660659:682165682165682860696Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein3e-32137
NC_020064:3157656:315765631576563158372717Serratia marcescens FGI94, complete genomepseudouridine synthase family protein3e-32137
NC_006511:682863:706724706724707419696Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCribosomal small subunit pseudouridine synthase7e-32136
NC_011147:682897:706670706670707365696Salmonella enterica subsp. enterica serovar Paratyphi A str16S rRNA pseudouridylate synthase A7e-32136
NC_012917:1840172:188727818872781887973696Pectobacterium carotovorum subsp. carotovorum PC1, complete genomepseudouridine synthase9e-32135
NC_013971:2408522:240852224085222409226705Erwinia amylovora ATCC 49946 chromosome, complete genomeribosomal small subunit pseudouridine synthase A2e-31134
NC_013961:2370994:237099423709942371698705Erwinia amylovora, complete genomeputative 16S pseudouridylate 516 synthase2e-31134
NC_010376:1433247:144803314480331448740708Finegoldia magna ATCC 29328, complete genome16S pseudouridylate synthase3e-31134
NC_020291:4305521:430675443067544307536783Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomepseudouridine synthase6e-31133
NC_014538:1311500:131510513151051315815711Thermoanaerobacter sp. X513 chromosome, complete genomepseudouridine synthase6e-31133
NC_014964:1169925:118428911842891184999711Thermoanaerobacter brockii subsp. finnii Ako-1 chromosome, completepseudouridine synthase6e-31133
NC_010320:1585974:159856715985671599277711Thermoanaerobacter sp. X514 chromosome, complete genomepseudouridine synthase6e-31133
NC_010321:1177238:119209811920981192808711Thermoanaerobacter pseudethanolicus ATCC 33223 chromosome, completepseudouridine synthase6e-31133
NC_014014:713506:716180716180716866687Mycoplasma crocodyli MP145 chromosome, complete genomeribosomal small subunit pseudouridine synthase A5e-31133
NC_014654:1529500:154368415436841544394711Halanaerobium sp. 'sapolanicus' chromosome, complete genomepseudouridine synthase1e-30132
NC_015558:1485762:150716015071601507885726Streptococcus parauberis KCTC 11537 chromosome, complete genomeribosomal large subunit pseudouridine synthase B1e-29128
NC_015379:1600715:161634916163491617041693Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,ribosomal small subunit pseudouridine synthase A2e-28125
NC_016630:1385719:139223213922321392960729Filifactor alocis ATCC 35896 chromosome, complete genomeribosomal large subunit pseudouridine synthase B2e-28125
NC_010939:405477:406801406801407493693Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeribosomal small subunit pseudouridine synthase A2e-28125
NC_010278:398521:402012402012402704693Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,ribosomal small subunit pseudouridine synthase A2e-28125
NC_009053:393700:397182397182397874693Actinobacillus pleuropneumoniae L20, complete genomeribosomal small subunit pseudouridine synthase A2e-28125
NC_005773:4539751:454591645459164546608693Pseudomonas syringae pv. phaseolicola 1448A, complete genomeRibosomal small subunit pseudouridine synthase A3e-27120
NC_014721:1629063:163588416358841636606723Caldicellulosiruptor kristjanssonii 177R1B chromosome, completepseudouridine synthase2e-26118
NC_004578:4781326:478496247849624785654693Pseudomonas syringae pv. tomato str. DC3000, complete genome3e-26117
NC_013515:1483471:149863314986331499319687Streptobacillus moniliformis DSM 12112, complete genomepseudouridine synthase6e-26116
NC_011296:530408:533351533351534064714Thermodesulfovibrio yellowstonii DSM 11347, complete genomeribosomal large subunit pseudouridine synthase B2e-25115
NC_011883:1422650:142486614248661425597732Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,pseudouridine synthase2e-25115
NC_013501:1547508:154673015467301547536807Rhodothermus marinus DSM 4252, complete genomeRNA-binding S4 domain protein1e-24112
NC_016622:82418:841808418084851672Azospirillum lipoferum 4B, complete genomepseudouridine synthase2e-24111
NC_007677:1847913:186170318617031862452750Salinibacter ruber DSM 13855, complete genomeribosomal large subunit pseudouridine synthase B4e-24110
NC_008781:2925818:292971729297172930451735Polaromonas naphthalenivorans CJ2, complete genomepseudouridine synthase4e-24110
NC_014032:1911500:192506119250611925846786Salinibacter ruber M8 chromosome, complete genomeribosomal large subunit pseudouridine synthase B5e-24110
NC_014314:755166:756401756401757201801Dehalogenimonas lykanthroporepellens BL-DC-9 chromosome, completepseudouridine synthase5e-24110
NC_007761:3564449:357923635792363580174939Rhizobium etli CFN 42, complete genomeprobable pseudouridylate synthase, ribosomal large subunit protein9e-24109
NC_013192:2381901:240037224003722401058687Leptotrichia buccalis DSM 1135, complete genomeRNA-binding S4 domain protein8e-24109
NC_012850:3454270:346796734679673468773807Rhizobium leguminosarum bv. trifolii WSM1325, complete genomepseudouridine synthase8e-24109
NC_007633:696604:713913713913714671759Mycoplasma capricolum subsp. capricolum ATCC 27343, completeribosomal large subunit pseudouridine synthase B8e-24109
NC_008536:5192235:520074552007455201539795Solibacter usitatus Ellin6076, complete genomepseudouridine synthase2e-23108
NC_002516:776787:801275801275801967693Pseudomonas aeruginosa PAO1, complete genomeprobable pseudouridylate synthase2e-23108
NC_013166:1149760:116997011699701170581612Kangiella koreensis DSM 16069, complete genomepseudouridine synthase3e-23107
NC_011060:459615:486311486311487054744Pelodictyon phaeoclathratiforme BU-1, complete genomepseudouridine synthase3e-23107
NC_008380:4078670:409290040929004093706807Rhizobium leguminosarum bv. viciae 3841, complete genomeputative ribosomal large subunit pseudouridine synthase B4e-23107
NC_006360:221345:244385244385245107723Mycoplasma hyopneumoniae 232, complete genomehypothetical protein8e-23106
NC_010994:3666651:368090736809073681710804Rhizobium etli CIAT 652, complete genomeRNA-pseudouridine synthase protein, ribosomal large subunit B6e-23106
NC_014391:2579919:258296525829652583735771Micromonospora aurantiaca ATCC 27029 chromosome, complete genomepseudouridine synthase2e-22104
NC_013729:5497814:551403855140385514772735Kribbella flavida DSM 17836, complete genomepseudouridine synthase3e-22104
NC_015381:3607626:362549336254933626209717Burkholderia gladioli BSR3 chromosome 1, complete sequencePseudouridine synthase, Rsu3e-22104
NC_011601:1315746:131942813194281320081654Escherichia coli O127:H6 str. E2348/69 chromosome, complete genome23S rRNA pseudouridine synthase E7e-22103
NC_010498:1995500:201158920115892012212624Escherichia coli SMS-3-5, complete genomeribosomal large subunit pseudouridine synthase E6e-22103
NC_010322:5349000:539716353971635397801639Pseudomonas putida GB-1 chromosome, complete genomepseudouridine synthase6e-22103
NC_014311:2781898:280402628040262804784759Ralstonia solanacearum PSI07 chromosome, complete genome16S rRNA pseudouridylate 516 synthase4e-22103
CP002185:1298675:130235713023571303010654Escherichia coli W, complete genome23S rRNA pseudouridine synthase8e-22102
CU928160:1232510:123619212361921236845654Escherichia coli IAI1 chromosome, complete genome23S rRNA pseudouridine synthase8e-22102
NC_010473:1245284:124896612489661249619654Escherichia coli str. K-12 substr. DH10B, complete genome23S rRNA pseudouridine synthase8e-22102
NC_000913:1188999:119352111935211194174654Escherichia coli K12, complete genome23S rRNA pseudouridine synthase8e-22102
AC_000091:1191353:119587511958751196528654Escherichia coli W3110 DNA, complete genome23S rRNA pseudouridine synthase8e-22102
AP010958:1339263:134294513429451343598654Escherichia coli O103:H2 str. 12009 DNA, complete genome23S rRNA pseudouridine synthase8e-22102
NC_009801:1296488:130017013001701300823654Escherichia coli E24377A, complete genomeribosomal large subunit pseudouridine synthase E8e-22102
NC_011751:1405381:140906314090631409716654Escherichia coli UMN026 chromosome, complete genome23S rRNA pseudouridine synthase E8e-22102
NC_009792:1739970:174139317413931742046654Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein1e-21102
NC_011748:1300863:130454513045451305198654Escherichia coli 55989, complete genome23S rRNA pseudouridine synthase E8e-22102
CU928145:1300863:130454513045451305198654Escherichia coli 55989 chromosome, complete genome23S rRNA pseudouridine synthase8e-22102
CP002516:2786000:280283828028382803491654Escherichia coli KO11, complete genomepseudouridine synthase8e-22102
NC_009800:1254409:125671712567171257370654Escherichia coli HS, complete genomeribosomal large subunit pseudouridine synthase E8e-22102
NC_016902:2786000:280283828028382803491654Escherichia coli KO11FL chromosome, complete genomepseudouridine synthase8e-22102
NC_013364:1477248:150434715043471505000654Escherichia coli O111:H- str. 11128, complete genome23S rRNA pseudouridine synthase8e-22102
NC_013361:1634226:163653416365341637187654Escherichia coli O26:H11 str. 11368 chromosome, complete genome23S rRNA pseudouridine synthase E8e-22102
NC_013353:1339263:134294513429451343598654Escherichia coli O103:H2 str. 12009, complete genome23S rRNA pseudouridine synthase8e-22102
NC_012759:1093764:109744610974461098099654Escherichia coli BW2952 chromosome, complete genome23S rRNA pseudouridine synthase E8e-22102
NC_011741:1232510:123619212361921236845654Escherichia coli IAI1 chromosome, complete genome23S rRNA pseudouridine synthase E8e-22102
NC_011415:1273551:127723312772331277886654Escherichia coli SE11 chromosome, complete genome23S rRNA pseudouridine synthase E8e-22102
NC_010468:2699000:271621727162172716870654Escherichia coli ATCC 8739, complete genomepseudouridine synthase8e-22102
NC_016629:3308329:332528433252843326048765Desulfovibrio africanus str. Walvis Bay chromosome, completepseudouridine synthase Rsu2e-21102
NC_010519:2033980:205149120514912052174684Haemophilus somnus 2336 chromosome, complete genomepseudouridine synthase3e-21101
NC_011742:1177946:118025411802541180907654Escherichia coli S88 chromosome, complete genome23S rRNA pseudouridine synthase E3e-21100
NC_012947:2566754:258406725840672584720654Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, complete23S rRNA pseudouridine synthase E7e-21100
NC_012967:1205985:120966712096671210320654Escherichia coli B str. REL606 chromosome, complete genome23S rRNA pseudouridine synthase E7e-21100
NC_012880:2425330:244298824429882443614627Dickeya dadantii Ech703, complete genomepseudouridine synthase6e-21100
NC_013169:1545890:155958315595831560437855Kytococcus sedentarius DSM 20547, complete genomepseudouridine synthase family protein5e-21100
NC_010658:1193225:119920611992061199859654Shigella boydii CDC 3083-94, complete genomeribosomal large subunit pseudouridine synthase E5e-21100
NC_014500:2589089:260573626057362606362627Dickeya dadantii 3937 chromosome, complete genome23S rRNA pseudouridine synthase5e-21100
NC_008309:1851189:187048118704811871128648Haemophilus somnus 129PT, complete genomeribosomal large subunit pseudouridine synthase4e-21100
NC_013941:1460144:146177514617751462428654Escherichia coli O55:H7 str. CB9615 chromosome, complete genomeribosomal large subunit pseudouridine synthase E4e-21100
NC_008563:1175035:117666611766661177319654Escherichia coli APEC O1, complete genome23S rRNA pseudouridine synthase3e-21100
NC_007946:1239278:123927812392781239931654Escherichia coli UTI89, complete genome23S rRNA pseudouridine synthase3e-21100
NC_014931:4490526:449900044990004499548549Variovorax paradoxus EPS chromosome, complete genomepseudouridine synthase7e-2199.8
NC_011985:194973:196698196698197534837Agrobacterium radiobacter K84 chromosome 1, complete genomepseudouridylate synthase1e-2099.4
NC_015277:6213304:6218403621840362196681266Sphingobacterium sp. 21 chromosome, complete genomepseudouridine synthase Rsu1e-2099.4
NC_020133:2421965:242267224226722423433762Mycobacterium liflandii 128FXT, complete genomepseudouridylate synthase1e-2099
NC_011094:1282385:128724412872441287981738Salmonella enterica subsp. enterica serovar Schwarzengrund strribosomal large subunit pseudouridine synthase E1e-2099
NC_012912:2216749:222356822235682224224657Dickeya zeae Ech1591, complete genomepseudouridine synthase2e-2098.6
NC_014499:63365:652766527665989714Candidatus Sulcia muelleri CARI chromosome, complete genomeputative ribosomal large subunit pseudouridine synthase2e-2098.6
NC_010830:475248:498341498341499099759Candidatus Amoebophilus asiaticus 5a2, complete genomehypothetical protein2e-2098.6
NC_011080:1321268:132532913253291326066738Salmonella enterica subsp. enterica serovar Newport str. SL254,ribosomal large subunit pseudouridine synthase E2e-2098.2
NC_011149:1870931:188985718898571890594738Salmonella enterica subsp. enterica serovar Agona str. SL483,ribosomal large subunit pseudouridine synthase E2e-2098.2
NC_016857:1276340:128040112804011281138738Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative RNA pseudouridylate synthase2e-2098.2
NC_017046:1277787:128047412804741281211738Salmonella enterica subsp. enterica serovar Typhimurium str. 798ribosomal large subunit pseudouridine synthase B2e-2098.2
NC_016831:1083871:108655810865581087097540Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative ribosomal large subunit pseudouridine synthase B2e-2098.2
NC_016863:1277652:128171312817131282378666Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative ribosomal large subunit pseudouridine synthase3e-2097.8
NC_016860:1317174:132123513212351321900666Salmonella enterica subsp. enterica serovar Typhimurium str23S rRNA pseudouridine synthase E3e-2097.8
NC_016810:1276340:128040112804011281066666Salmonella enterica subsp. enterica serovar Typhimurium strputative ribosomal large subunit pseudouridine synthase B3e-2097.8
NC_011294:1896168:191449019144901915155666Salmonella enterica subsp. enterica serovar Enteritidis strribosomal large subunit pseudouridine synthase B3e-2097.8
NC_011274:1928939:194725719472571947922666Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91ribosomal large subunit pseudouridine synthase B3e-2097.8
NC_003197:1320861:132354813235481324213666Salmonella typhimurium LT2, complete genomeputative ribosomal large subunit pseudouridine synthase3e-2097.8
NC_013947:4695000:471842547184254719159735Stackebrandtia nassauensis DSM 44728 chromosome, complete genomepseudouridine synthase4e-2097.4
NC_010694:2189652:220454522045452205261717Erwinia tasmaniensis, complete genomeRibosomal large subunit pseudouridine synthase E4e-2097.4
NC_009832:2211154:221772322177232218259537Serratia proteamaculans 568, complete genomepseudouridine synthase4e-2097.4
NC_011083:1323827:132788813278881328625738Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,ribosomal large subunit pseudouridine synthase E5e-2097.1
NC_015761:1181186:118349411834941184147654Salmonella bongori NCTC 12419, complete genomeribosomal large subunit pseudouridine synthase B7e-2096.7
NC_013894:543901:561979561979562722744Thermocrinis albus DSM 14484 chromosome, complete genomepseudouridine synthase8e-2096.3
NC_012724:3222415:323714632371463237865720Burkholderia glumae BGR1 chromosome 1, complete genomePseudouridine synthase, Rsu9e-2096.3
NC_013521:2193203:221197322119732212764792Sanguibacter keddieii DSM 10542, complete genomepseudouridine synthase family protein1e-1995.9
NC_015567:2125415:212990321299032130529627Serratia sp. AS9 chromosome, complete genomepseudouridine synthase Rsu2e-1995.5
NC_015566:2125403:212989121298912130517627Serratia sp. AS12 chromosome, complete genomepseudouridine synthase Rsu2e-1995.5
NC_012125:2531817:255005725500572550794738Salmonella enterica subsp. enterica serovar Paratyphi C strainribosomal large subunit pseudouridine synthase B1e-1995.5
NC_010729:1344903:1359388135938813607071320Porphyromonas gingivalis ATCC 33277, complete genomeribosomal large subunit pseudouridine synthase B2e-1995.1
NC_011205:2024458:204271620427162043453738Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853RNA pseudouridine synthase family protein2e-1995.1
NC_012988:4387735:439056843905684391338771Methylobacterium extorquens DM4, complete genomepseudouridine synthase, 1-deoxy-D-xylulose 5-phosphate reductoisomerase3e-1994.7
NC_020064:1962172:196875719687571969413657Serratia marcescens FGI94, complete genomepseudouridine synthase family protein3e-1994.4
NC_013850:3340882:336399933639993364649651Klebsiella variicola At-22 chromosome, complete genomepseudouridine synthase7e-1993.2
NC_020054:4795000:4795120479512047970061887Fibrella aestuarina BUZ 2 drat genomeribosomal large subunit pseudouridine synthase B8e-1993.2
NC_016803:465453:486678486678487433756Desulfovibrio desulfuricans ND132 chromosome, complete genomepseudouridine synthase1e-1892.8
NC_020418:2910593:292517229251722925852681Morganella morganii subsp. morganii KT, complete genomeRibosomal large subunit pseudouridine synthase E1e-1892.4
NC_017317:1143378:1144066114406611451871122Corynebacterium ulcerans 809 chromosome, complete genomehypothetical protein1e-1892.4
NC_015683:1146913:1146913114691311480341122Corynebacterium ulcerans BR-AD22 chromosome, complete genomehypothetical protein1e-1892.4
NC_005070:904751:910261910261911013753Synechococcus sp. WH 8102, complete genomeputative pseudouridylate synthase specific to ribosomal small subunit2e-1892
NC_016781:1039716:105276410527641053624861Corynebacterium pseudotuberculosis 3/99-5 chromosome, completeRNA pseudouridine synthase B2e-1892
NC_016932:1041306:104439510443951045255861Corynebacterium pseudotuberculosis 316 chromosome, complete genomeRNA pseudouridine synthase B2e-1892
NC_017300:1045555:105024610502461051106861Corynebacterium pseudotuberculosis 1002 chromosome, completeRNA pseudouridine synthase B2e-1892
NC_017303:1039562:105261010526101053470861Corynebacterium pseudotuberculosis I19 chromosome, complete genomeRNA pseudouridine synthase B2e-1892
NC_004722:4496000:449602844960284496717690Bacillus cereus ATCC 14579, complete genometRNA pseudouridine synthase A2e-1891.7
NC_007513:1311957:133676213367621337505744Synechococcus sp. CC9902, complete genomePseudouridine synthase, Rsu2e-1891.7
NC_017305:1037133:1049920104992010510411122Corynebacterium pseudotuberculosis PAT10 chromosome, completeRNA pseudouridine synthase B2e-1891.7
NC_017301:1037519:1052148105214810532691122Corynebacterium pseudotuberculosis C231 chromosome, completeRNA pseudouridine synthase B2e-1891.7
NC_017031:1039548:1052335105233510534561122Corynebacterium pseudotuberculosis P54B96 chromosome, completeRNA pseudouridine synthase B2e-1891.7
NC_014329:1041556:1052512105251210536331122Corynebacterium pseudotuberculosis FRC41 chromosome, completehypothetical protein2e-1891.7
NC_014484:1163576:119151711915171192284768Spirochaeta thermophila DSM 6192 chromosome, complete genomeputative pseudouridylate synthase4e-1890.9
NC_012731:2083650:208735820873582088008651Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomepseudouridine synthase4e-1890.9
NC_014121:2514544:254685025468502547503654Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completeribosomal large subunit pseudouridine synthase E3e-1890.9
NC_017047:3212000:323245632324563233082627Rahnella aquatilis HX2 chromosome, complete genomepseudouridine synthase5e-1890.5
NC_015061:3147691:316785431678543168480627Rahnella sp. Y9602 chromosome, complete genomepseudouridine synthase5e-1890.5
NC_016783:1169821:119204411920441193009966Corynebacterium diphtheriae INCA 402 chromosome, complete genomeputative pseudouridine synthase B6e-1890.1
NC_016148:1175999:118625111862511186982732Thermovirga lienii DSM 17291 chromosome, complete genomepseudouridine synthase8e-1889.7
NC_011761:1904637:192817119281711928926756Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeribosomal small subunit pseudouridine synthase A9e-1889.7
NC_016612:3803130:380683638068363807468633Klebsiella oxytoca KCTC 1686 chromosome, complete genomeribosomal large subunit pseudouridine synthase E9e-1889.4
NC_016818:3148000:316833631683363168962627Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completepseudouridine synthase family protein1e-1789
NC_012803:1519138:153566115356611536617957Micrococcus luteus NCTC 2665, complete genomepseudouridine synthase family protein2e-1788.6
NC_013282:1804909:180957518095751810231657Cronobacter turicensis, complete genomeRibosomal large subunit pseudouridine synthase E2e-1788.6
NC_014221:1518583:153362815336281534353726Truepera radiovictrix DSM 17093 chromosome, complete genomeRNA-binding S4 domain protein4e-1787.4
NC_014315:2177277:217814421781442178950807Nitrosococcus watsoni C-113 chromosome, complete genomeRNA-binding S4 domain-containing protein2e-1685.5
NC_015318:249445:253296253296254018723Hippea maritima DSM 10411 chromosome, complete genomepseudouridine synthase Rsu2e-1685.1
NC_016940:470163:495114495114495926813Saprospira grandis str. Lewin chromosome, complete genomepseudouridine synthase2e-1685.1
NC_017080:191906:196644196644197639996Phycisphaera mikurensis NBRC 102666, complete genomeribosomal large subunit pseudouridine synthase B3e-1684.7
NC_007614:261588:285301285301286032732Nitrosospira multiformis ATCC 25196 chromosome 1, completePseudouridine synthase, Rsu2e-1684.7
NC_014562:983398:987170987170987841672Pantoea vagans C9-1 chromosome, complete genomeputative ribosomal large subunit pseudouridine synthase3e-1684.3
NC_014376:3547218:356366635636663564454789Clostridium saccharolyticum WM1 chromosome, complete genomepseudouridine synthase4e-1684
NC_009092:3783000:378552937855293786245717Shewanella loihica PV-4, complete genomepseudouridine synthase4e-1684
NC_016602:2292518:230365623036562304603948Vibrio furnissii NCTC 11218 chromosome 1, complete sequencepseudouridine synthase family 1 protein6e-1683.6
NC_015424:2836920:2839270283927028402861017Aeromonas veronii B565 chromosome, complete genome23S rRNA pseudouridine synthase F8e-1683.2
NC_015424:3112637:317324631732463174169924Aeromonas veronii B565 chromosome, complete genomeribosomal large subunit pseudouridine synthase B1e-1582.8
NC_008344:1:574757476478732Nitrosomonas eutropha C91, complete genomePseudouridine synthase, Rsu9e-1682.8
NC_008781:1973826:1990586199058619921691584Polaromonas naphthalenivorans CJ2, complete genomepseudouridine synthase1e-1582.4
NC_004757:427483:472644472644473522879Nitrosomonas europaea ATCC 19718, complete genomepossible pseudouridylate synthase family 12e-1582
NC_008570:3220539:327904432790443279967924Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomeribosomal large subunit pseudouridine synthase B2e-1581.6
NC_009654:3316458:3327414332741433284811068Marinomonas sp. MWYL1, complete genome23S rRNA pseudouridine synthase F4e-1580.9
NC_020211:2882093:288823228882322889128897Serratia marcescens WW4, complete genome23S rRNA pseudouridylate synthase4e-1580.9
NC_013361:1754346:178496817849681785840873Escherichia coli O26:H11 str. 11368 chromosome, complete genome23S rRNA pseudouridylate synthase B5e-1580.5
NC_017243:3141500:3141502314150231425511050Brachyspira intermedia PWS/A chromosome, complete genomepseudouridine synthase2e-1479
NC_014935:1287494:129294012929401293518579Nitratifractor saLSUginis DSM 16511 chromosome, complete genomepseudouridine synthase1e-1479
NC_008800:2013450:202454020245402025412873Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,23S rRNA pseudouridine synthase F2e-1478.6
NC_012225:2198987:2216339221633922174181080Brachyspira hyodysenteriae WA1, complete genomepseudouridine synthase2e-1478.2
NC_020409:437781:466777466777467529753Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeputative enzyme2e-1478.2
NC_008752:4747376:476254447625444763338795Acidovorax avenae subsp. citrulli AAC00-1, complete genomeRNA-binding S4 domain protein2e-1375.5
NC_009659:2849000:284942328494232850058636Janthinobacterium sp. Marseille chromosome, complete genomepseudouridylate synthase2e-1375.1
NC_009663:738846:762613762613763179567Sulfurovum sp. NBC37-1, complete genomeribosomal small subunit pseudouridine synthase A5e-1373.9
NC_016027:2047954:210886021088602109639780Gluconacetobacter xylinus NBRC 3288, complete genometRNA/rRNA pseudouridine synthase1e-1272.4
NC_009613:377112:380811380811381719909Flavobacterium psychrophilum JIP02/86, complete genomepseudouridylate synthase2e-1271.6
NC_013209:2782500:278323927832392784015777Acetobacter pasteurianus IFO 3283-01, complete genometRNA/rRNA pseudouridine synthase3e-1167.8
NC_017100:2782303:278303127830312783807777Acetobacter pasteurianus IFO 3283-03, complete genometRNA/rRNA pseudouridine synthase3e-1167.8
NC_017108:2779303:278036827803682781144777Acetobacter pasteurianus IFO 3283-12, complete genometRNA/rRNA pseudouridine synthase3e-1167.8
NC_017111:2779321:278038627803862781162777Acetobacter pasteurianus IFO 3283-32, complete genometRNA/rRNA pseudouridine synthase3e-1167.8
NC_017121:2781000:278178827817882782564777Acetobacter pasteurianus IFO 3283-07, complete genometRNA/rRNA pseudouridine synthase3e-1167.8
NC_017125:2782283:278301127830112783787777Acetobacter pasteurianus IFO 3283-22, complete genometRNA/rRNA pseudouridine synthase3e-1167.8
NC_017146:2782325:278305327830532783829777Acetobacter pasteurianus IFO 3283-26, complete genometRNA/rRNA pseudouridine synthase3e-1167.8
NC_017150:2689920:269098526909852691761777Acetobacter pasteurianus IFO 3283-01-42C, complete genometRNA/rRNA pseudouridine synthase3e-1167.8
NC_008710:108057:125273125273126016744Borrelia turicatae 91E135, complete genomeribosomal large subunit pseudouridine synthase B1e-0962.8
NC_009484:1627734:164140616414061642149744Acidiphilium cryptum JF-5 chromosome, complete genomeRNA-binding S4 domain-containing protein4e-0960.8
NC_015186:1698000:171166817116681712411744Acidiphilium multivorum AIU301, complete genomeribosomal large subunit pseudouridine synthase B4e-0960.8
NC_010673:113133:125486125486126247762Borrelia hermsii DAH, complete genomeribosomal large subunit pseudouridine synthase B8e-0959.7
NC_015577:1974821:197410819741081974827720Treponema azotonutricium ZAS-9 chromosome, complete genomeribosomal large subunit pseudouridine synthase F3e-0857.8
NC_017082:6321124:6321124632112463232532130Bradyrhizobium sp. S23321, complete genomeputative Pseudouridine synthase2e-0755.1
NC_008787:1582110:159550715955071596268762Campylobacter jejuni subsp. jejuni 81-176, complete genomeRNA pseudouridine synthase family protein3e-0754.7
NC_003912:1742370:175674617567461757507762Campylobacter jejuni RM1221, complete genomeRNA pseudouridylate synthase family protein6e-0753.5
NC_017280:1584961:159755415975541598315762Campylobacter jejuni subsp. jejuni M1 chromosome, complete genomePseudouridine synthase6e-0753.5
NC_017279:1603916:161829316182931619054762Campylobacter jejuni subsp. jejuni IA3902 chromosome, completeputative ribosomal pseudouridine synthase6e-0753.5
NC_002163:1607360:162089916208991621660762Campylobacter jejuni subsp. jejuni NCTC 11168, complete genomeputative ribosomal pseudouridine synthase6e-0753.5
NC_017281:1645903:166027916602791661040762Campylobacter jejuni subsp. jejuni S3 chromosome, complete genomePutative ribosomal pseudouridine synthase7e-0753.5
NC_009707:1811650:182503218250321825793762Campylobacter jejuni subsp. doylei 269.97 chromosome, completeRNA pseudouridine synthase family protein9e-0753.1